def test_hdf5_append(self):
hdf5 = db.get_datawriter(
'hdf5',
"UnitTest_tmp",
self.parnames,
self.like,
self.randompar,
simulations=self.simulations,
chains=1,
save_sim=True,
)
hdf5.save(self.like, self.randompar, self.simulations)
hdf5.save(self.like, self.randompar, self.simulations)
hdf5.finalize()
hdf5_new = db.get_datawriter('hdf5',
"UnitTest_tmp",
self.parnames,
self.like,
self.randompar,
simulations=self.simulations,
chains=1,
save_sim=True,
dbappend=True)
hdf5_new.save(self.like, self.randompar, self.simulations)
hdf5_new.save(self.like, self.randompar, self.simulations)
hdf5_new.finalize()
hdf5data = hdf5_new.getdata()
self.assertEqual(len(hdf5data), 4)
def test_csv_append(self):
csv = db.get_datawriter(
'csv',
"UnitTest_tmp",
self.parnames,
self.like,
self.randompar,
simulations=self.simulations,
chains=1,
save_sim=True,
)
csv.save(self.like, self.randompar, self.simulations)
csv.save(self.like, self.randompar, self.simulations)
csv.finalize()
csv_new = db.get_datawriter('csv',
"UnitTest_tmp",
self.parnames,
self.like,
self.randompar,
simulations=self.simulations,
chains=1,
save_sim=True,
dbappend=True)
csv_new.save(self.like, self.randompar, self.simulations)
csv_new.save(self.like, self.randompar, self.simulations)
csv_new.finalize()
csvdata = csv_new.getdata()
self.assertEqual(len(csvdata), 4)
def _init_database(self, like, randompar, simulations):
if self.dbinit:
print('Initialize database...')
self.datawriter = database.get_datawriter(self.dbformat,
self.dbname, self.parnames, like, randompar, simulations, save_sim=self.save_sim,
dbinit=self.dbinit, db_precision=self.db_precision, setup=self.setup)
self.dbinit = False
def test_custom_no_setup(self):
with self.assertRaises(ValueError):
_ = db.get_datawriter('custom',
"UnitTest_tmp",
self.parnames,
self.like,
self.randompar,
simulations=self.simulations,
chains=1,
save_sim=True)
def test_not_existing_dbformat(self):
with self.assertRaises(AttributeError):
_ = db.get_datawriter('xxx',
"UnitTest_tmp",
self.parnames,
self.like,
self.randompar,
simulations=self.simulations,
chains=1,
save_sim=True)
def test_noData(self):
nodata = db.get_datawriter('noData',
"UnitTest_tmp",
self.parnames,
np.array(self.like),
self.randompar,
simulations=self.simulations,
chains=1,
save_sim=True)
nodata.save(self.like, self.randompar, self.simulations)
nodata.finalize()
self.assertEqual(nodata.getdata(), None)
def test_custom(self):
custom = db.get_datawriter('custom',
"UnitTest_tmp",
self.parnames,
self.like,
self.randompar,
setup=MockSetup(),
simulations=self.simulations,
chains=1,
save_sim=True)
custom.save(self.like, self.randompar, self.simulations)
custom.finalize()
self.assertEqual(custom.getdata(), None)
def test_sql_single(self):
sql = db.get_datawriter('sql',
"UnitTest_tmp",
self.parnames,
self.like,
self.randompar,
simulations=self.simulations,
chains=1,
save_sim=True)
sql.save(self.like, self.randompar, self.simulations)
sql.finalize()
sqldata = sql.getdata()
self.assertEqual(str(type(sqldata)), str(type(np.array([]))))
self.assertEqual(len(sqldata[0]), 12)
self.assertEqual(len(sqldata), 1)
self.assertEqual(len(sql.header), 12)
def test_ram_single_false(self):
ram = db.get_datawriter('ram',
"UnitTest_tmp",
self.parnames,
self.like,
self.randompar,
simulations=self.simulations,
chains=1,
save_sim=False)
ram.save(self.like, self.randompar, self.simulations)
ram.finalize()
ramdata = ram.getdata()
self.assertEqual(str(type(ramdata)), str(type(np.array([]))))
self.assertEqual(len(ramdata[0]), 7)
self.assertEqual(len(ramdata), 1)
self.assertEqual(len(ramdata.dtype), len(ram.header))
self.assertEqual(len(ram.header), 7)
def test_csv_single(self):
csv = db.get_datawriter('csv',
"UnitTest_tmp",
self.parnames,
self.like,
self.randompar,
simulations=self.simulations,
chains=1,
save_sim=True)
csv.save(self.like, self.randompar, self.simulations)
csv.save(self.like, self.randompar, self.simulations)
csv.finalize()
csvdata = csv.getdata()
self.assertEqual(str(type(csvdata)), str(type(np.array([]))))
self.assertEqual(len(csvdata[0]), 12)
self.assertEqual(len(csvdata), 2)
self.assertEqual(len(csv.header), 12)
def test_hdf5_single_false(self):
hdf5 = db.get_datawriter('hdf5',
"UnitTest_tmp",
self.parnames,
self.like,
self.randompar,
simulations=self.simulations,
chains=1,
save_sim=False)
hdf5.save(self.like, self.randompar, self.simulations)
hdf5.save(self.like, self.randompar, self.simulations)
hdf5.finalize()
hdf5data = hdf5.getdata()
self.assertEqual(str(type(hdf5data)), str(type(np.array([]))))
self.assertEqual(len(hdf5data[0]), 7)
self.assertEqual(len(hdf5data), 2)
self.assertEqual(len(hdf5.header), 7)
def test_csv_multiline_false(self):
# Save not Simulations
csv = db.get_datawriter('csv',
"UnitTest_tmp",
self.parnames,
self.like,
self.randompar,
simulations=self.simulations_multi,
chains=1,
save_sim=False)
csv.save(self.like, self.randompar, self.simulations_multi)
csv.save(self.like, self.randompar, self.simulations_multi)
csv.finalize()
csvdata = csv.getdata()
self.assertEqual(str(type(csvdata)), str(type(np.array([]))))
self.assertEqual(len(csvdata[0]), 7)
self.assertEqual(len(csvdata), 2)
self.assertEqual(len(csv.header), 7)
def test_hdf5_multiline(self):
hdf5 = db.get_datawriter('hdf5',
"UnitTest_tmp",
self.parnames,
self.like,
self.randompar,
simulations=self.simulations_multi,
chains=1,
save_sim=True)
hdf5.save(self.like, self.randompar, self.simulations_multi)
hdf5.save(self.like, self.randompar, self.simulations_multi)
# Save Simulations
hdf5.finalize()
hdf5data = hdf5.getdata()
self.assertEqual(str(type(hdf5data)), str(type(np.array([]))))
self.assertEqual(len(hdf5data[0]), 8)
self.assertEqual(len(hdf5data), 2)
self.assertEqual(len(hdf5.header), 32)