def test_file_size_partially_empty(self):
instrument = InstrumentStrategy()
path_file = os.path.join(instrument.temp_dir,
'19BMTA2306_9-9-3-2-2020-RA1.txt')
pdf = ('../pdf/d10/patient/5.00/19BMTA2306_9-9-3-2-2020-RA1.pdf',)
instrument.convert_pdf(pdf)
self.assertLess(200, os.stat(path_file).st_size)
def test_to_nested_happy_path(self):
instrument = InstrumentStrategy()
test_list = [
'F',
'1',
'2',
'3',
'4',
'A1c',
'1',
'2',
'3',
'4',
'A1c',
'1',
'2',
'3',
'4',
'A1c',
'1',
'2',
'3',
'4',
'A1c',
'1',
'2',
'3',
'4',
]
expected_list = [['F', '1', '2', '3', '4'],
['A1c', '1', '2', '3', '4'],
['A1c', '1', '2', '3', '4'],
['A1c', '1', '2', '3', '4'],
[
'A1c',
'1',
'2',
'3',
'4',
]]
nested_test_list = instrument.to_nested(test_list)
self.assertEqual(nested_test_list, expected_list)
def setUp(self):
# initialize parsing algorithms
self.instrument = InstrumentStrategy()
self.d10 = D10Strategy()
self.variant = VariantStrategy()
self.nbs = NbsStrategy()
# initialize pdf directories
self.d10_patient_430 = '../pdf/d10/patient/4.30'
self.d10_patient_500 = '../pdf/d10/patient/5.00'
self.d10_control_430 = '../pdf/d10/control/4.30/test'
self.variant_patient_a1c = '../pdf/variant/A1c'
self.variant_patient_bthal = '../pdf/variant/BThal/patient'
self.variant_control_bthal = '../pdf/variant/BThal/control'
self.variant_patient_turbo_a1c = '../pdf/variant/Turbo A1c'
self.vnbs_patient = '../pdf/vnbs/patient'
# initialize save directory
self.save_dir = os.path.abspath(os.getenv('programdata'))
def test_wrapper_decode_empty_array(self):
arr_to_test = []
self.assertFalse(inst.wrapper_decode(self, arr_to_test))
def test_wrapper_decode_sad_path(self):
arr_to_test = [b'one', b'two', b'three']
expected_result = ['one1', 'two2', 'three3']
self.assertNotEqual(expected_result,
inst.wrapper_decode(self, arr_to_test))
class BuildCsvTestCase(unittest.TestCase):
''' tests the build_csv function'''
def setUp(self):
# initialize parsing algorithms
self.instrument = InstrumentStrategy()
self.d10 = D10Strategy()
self.variant = VariantStrategy()
self.nbs = NbsStrategy()
# initialize pdf directories
self.d10_patient_430 = '../pdf/d10/patient/4.30'
self.d10_patient_500 = '../pdf/d10/patient/5.00'
self.d10_control_430 = '../pdf/d10/control/4.30/test'
self.variant_patient_a1c = '../pdf/variant/A1c'
self.variant_patient_bthal = '../pdf/variant/BThal/patient'
self.variant_control_bthal = '../pdf/variant/BThal/control'
self.variant_patient_turbo_a1c = '../pdf/variant/Turbo A1c'
self.vnbs_patient = '../pdf/vnbs/patient'
# initialize save directory
self.save_dir = os.path.abspath(os.getenv('programdata'))
@unittest.skip('Skipping...')
def test_csv_file(self):
save = os.path.join(self.save_dir, 'one_entry.csv')
self.instrument.convert_pdf_test(self.d10_dir)
self.d10.build_csv(save)
self.assertTrue(os.path.isfile(save))
@unittest.skip('Skipping...')
def test_d10_50(self):
save = os.path.join(self.save_dir, 'patient_D10_5.0.csv')
self.instrument.convert_pdf_test(self.d10_dir)
self.d10.build_csv(save)
self.assertTrue(os.path.isfile(save))
@unittest.skip('Skipping...')
def test_variant(self):
save = os.path.join(self.save_dir, 'patient_variant.csv')
self.instrument.convert_pdf_test(self.variant_patient_a1c)
self.variant.build_csv(save)
self.assertTrue(os.path.isfile(save))
@unittest.skip('Skipping...')
def test_vnbs(self):
save = os.path.join(self.save_dir, 'patient_vnbs.csv')
self.instrument.convert_pdf_test(self.vnbs_patient)
self.nbs.build_csv(save)
self.assertTrue(os.path.isfile(save))
# @unittest.skip('Skipping...')
def test_d10_patient_430(self):
save = os.path.join(self.save_dir, 'patient_D10_4.30.csv')
self.instrument.convert_pdf_test(self.d10_patient_430)
self.d10.build_csv(save)
self.assertTrue(os.path.isfile(save))
# @unittest.skip('Skipping...')
def test_d10_patient_500(self):
save = os.path.join(self.save_dir, 'patient_D10_5.00.csv')
self.instrument.convert_pdf_test(self.d10_patient_500)
self.d10.build_csv(save)
self.assertTrue(os.path.isfile(save))
# @unittest.skip('Skipping...')
def test_d10_control_430(self):
save = os.path.join(self.save_dir, 'control_D10_4.30.csv')
self.instrument.convert_pdf_test(self.d10_control_430)
self.d10.build_csv(save)
self.assertTrue(os.path.isfile(save))
def test_directory(self):
instrumet = InstrumentStrategy()
pdf = ('../pdf/d10/patient/5.00/19BMTA2306_9-9-3-2-2020-RA1.pdf',)
instrumet.convert_pdf(pdf)
self.assertTrue(os.path.isdir(instrumet.temp_dir))
def test_txt_file(self):
instrument = InstrumentStrategy()
pdf = ('../pdf/d10/patient/5.00/19BMTA2306_9-9-3-2-2020-RA1.pdf',)
instrument.convert_pdf(pdf)
self.assertTrue(os.path.isfile(os.path.join(instrument.temp_dir,
'19BMTA2306_9-9-3-2-2020-RA1.txt')))
def test_rename_unknown_happy_path(self):
test_list = ['Jonnel', 'Unknown', 'one']
expected_result = ['Jonnel', 'Unknown1', 'one']
inst.rename_unknown(self, test_list)
self.assertEqual(test_list, expected_result)
def test_rename_unknown_no_unknowns(self):
test_list = ['F', 'A1c', 'S', 'E', 'LA1c']
expected_result = 'There are no Unknowns in the list.'
self.assertEqual(inst.rename_unknown(self, test_list), expected_result)
def test_rename_unknown_empty_list(self):
test_list = []
expected_result = 'List is empty.'
self.assertEqual(inst.rename_unknown(self, test_list), expected_result)
def test_rename_unknown_multiple_unknowns(self):
test_list = ['Unknown', 'F', 'Unknown', 'A1c', 'Unknown']
expected_result = ['Unknown1', 'F', 'Unknown2', 'A1c', 'Unknown3']
inst.rename_unknown(self, test_list)
self.assertEqual(test_list, expected_result)