def test_protein_phosphorylation_details_structure(model, identifier='GAL4'):
response = json.loads(model.protein_phosphorylation_details(identifier))
assert response is not None
for entry in response:
check_evidence(entry)
assert 'locus' in entry
assert 'site_index' in entry
assert 'site_residue' in entry
def check_sequence_evidence(evidence):
check_evidence(evidence)
assert "residues" in evidence
assert "locus" in evidence
##check_obj(evidence['residues'])
check_obj(evidence["locus"])
assert "format_name" in evidence["locus"]
def check_regulation_evidence(evidence):
check_evidence(evidence)
assert 'locus1' in evidence
assert 'locus2' in evidence
#assert 'conditions' in evidence
check_obj(evidence['locus1'])
assert 'format_name' in evidence['locus1']
check_obj(evidence['locus2'])
assert 'format_name' in evidence['locus2']
def check_protein_domain_evidence(evidence):
check_evidence(evidence)
assert 'domain' in evidence
#assert 'protein' in evidence
assert 'status' in evidence
assert 'start' in evidence
assert 'end' in evidence
assert 'date_of_run' in evidence
assert 'evalue' in evidence
check_obj(evidence['domain'])
def check_phenotype_evidence(evidence):
check_evidence(evidence)
assert 'phenotype' in evidence
assert 'locus' in evidence
#assert 'conditions' in evidence
assert 'category' in evidence['experiment']
assert 'mutant_type' in evidence
check_obj(evidence['phenotype'])
check_obj(evidence['locus'])
assert 'format_name' in evidence['locus']
def test_binding_site_details_structure(model, identifier='GAL4'):
response = json.loads(model.binding_site_details(identifier))
assert response is not None
for entry in response:
check_evidence(entry)
assert 'locus' in entry
assert 'expert_confidence' in entry
assert 'total_score' in entry
assert 'motif_id' in entry
assert 'link' in entry
check_obj(entry['locus'])
assert 'format_name' in entry['locus']
def check_ec_number_evidence(evidence):
check_evidence(evidence)
