def test_01_good(self):
ri, read_data = read_run_info(f("RunInfo-input01-good.xml"), 5, 8)
self.assertNotEqual(None, ri)
self.assertEqual(4, len(read_data))
rifile = StringIO(ET.tostring(ri.getroot()).decode("utf-8"))
diff = xml_diff_files(f("RunInfo-output01-good.xml"), rifile)
self.assertEqual([], diff)
def test_missing_file(self):
with self.assertRaises(EnvironmentError) as e:
ri = read_run_info("missing", 5, 8)
def test_07_r3notindex(self):
with self.assertRaises(ValueError) as e:
read_run_info(f("RunInfo-input07-bad-r3notindex.xml"), 5, 8)
def test_04_no_umi_cycles(self):
with self.assertRaises(ValueError) as e:
read_run_info(f("RunInfo-input04-bad-no-umi-cycles.xml"), 5, 8)
def test_03_single_index(self):
with self.assertRaises(ValueError) as e:
read_run_info(f("RunInfo-input03-bad-single-index.xml"), 5, 8)
def test_02_no_reads(self):
with self.assertRaises(ValueError) as e:
read_run_info(f("RunInfo-input02-bad-no-reads.xml"), 5, 8)