def test_commandline_function_with_args(self, ):
with patch('stitch_m.run.main_run', MagicMock()) as main_run:
mosaic_arg = "mosaic_path"
marker_arg = "marker_path"
sys.argv = [
"StitchM", "--mosaic", mosaic_arg, "--markers", marker_arg
]
commandline.main()
main_run.assert_called_once_with(ANY, mosaic_arg, marker_arg)
def test_commandline_function_setup_windows_shortcut(self):
local_config_file = Path(
os.path.join(
os.path.dirname(os.path.dirname(os.path.abspath(__file__))),
"stitch_m", "config.cfg"))
with patch('stitch_m.file_handler.create_Windows_shortcut',
MagicMock()) as mocked_shortcut_creator:
sys.argv = ["StitchM", "setup", "-w"]
commandline.main()
mocked_shortcut_creator.assert_called_once()
def test_commandline_function_with_args(self, ):
with patch('stitch_m.run.main_run', MagicMock()) as main_run:
kwargs = {}
kwargs['mosaic'] = "mosaic_path"
kwargs['markers'] = "marker_path"
kwargs['normalise'] = True
sys.argv = [
"StitchM", "--mosaic", kwargs['mosaic'], "--markers",
kwargs['markers']
]
commandline.main()
main_run.assert_called_once_with(ANY, **kwargs)
def test_commandline_function_setup_subpaser(self, mocked_printhelp):
sys.argv = ["StitchM", "setup"]
commandline.main()
mocked_printhelp.assert_called_once()
def test_commandline_function(self, mocked_printhelp):
sys.argv = ["StitchM"]
commandline.main()
mocked_printhelp.assert_called_once()