Exemple #1
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 def __init__(self, startpos, endpos, orf, gff={}):
     startcodon = _handle_startcodon(startpos)
     stopcodon = _handle_stopcodon(endpos)
     # initialise basal ExonOnOrf class
     ExonOnOrf.__init__(self, startcodon, stopcodon, orf, gff=gff)
     self.IS_FIRST = True
     self.IS_FINAL = True
Exemple #2
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 def __init__(self,startpos,endpos,orf,gff={}):
     startcodon = _handle_startcodon(startpos)
     stopcodon  = _handle_stopcodon(endpos)
     # initialise basal ExonOnOrf class
     ExonOnOrf.__init__(self,startcodon,stopcodon,orf,gff=gff)
     self.IS_FIRST = True
     self.IS_FINAL = True
Exemple #3
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 def __init__(self, startpos, endpos, gff={}):
     startcodon = _handle_startcodon(startpos)
     stopcodon = _handle_stopcodon(endpos)
     # initialise basal Exon class
     Exon.__init__(self, startcodon, stopcodon, gff=gff)
Exemple #4
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 def __init__(self, acceptor, endpos, gff={}):
     stopcodon = _handle_stopcodon(endpos)
     # initialise basal Exon class
     Exon.__init__(self, acceptor, stopcodon, gff=gff)
Exemple #5
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 def __init__(self, acceptor, endpos, orf, gff={}):
     stopcodon = _handle_stopcodon(endpos)
     # initialise basal ExonOnOrf class
     ExonOnOrf.__init__(self, acceptor, stopcodon, orf, gff=gff)
     self.IS_FINAL = True
Exemple #6
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 def __init__(self,startpos,endpos,gff={}):
     startcodon = _handle_startcodon(startpos)
     stopcodon  = _handle_stopcodon(endpos)
     # initialise basal Exon class
     Exon.__init__(self,startcodon,stopcodon,gff=gff)
Exemple #7
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 def __init__(self,acceptor,endpos,gff={}):
     stopcodon  = _handle_stopcodon(endpos)
     # initialise basal Exon class
     Exon.__init__(self,acceptor,stopcodon,gff=gff)
Exemple #8
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 def __init__(self,acceptor,endpos,orf,gff={}):
     stopcodon  = _handle_stopcodon(endpos)
     # initialise basal ExonOnOrf class
     ExonOnOrf.__init__(self,acceptor,stopcodon,orf,gff=gff)
     self.IS_FINAL = True