def list_matches(taboo_store, rsnumber_stream, sample_id):
"""Run the matching pipeline."""
logger.debug('compare SNPs against all samples')
comparisons = match_sample(taboo_store, rsnumber_stream, sample_id,
experiment='sequencing',
alt_experiment='genotyping')
logger.debug('sort the results by score')
ranked_comparisons = sort_scores(comparisons)
logger.debug('extract best match')
return ranked_comparisons
def top_match(taboo_store, rsnumber_stream, sample_id):
"""Run the matching pipeline."""
logger.debug('compare SNPs against all samples')
comparisons = match_sample(taboo_store, rsnumber_stream, sample_id,
experiment='sequencing',
alt_experiment='genotyping')
logger.debug('sort the results by score')
ranked_comparisons = sort_scores(comparisons)
logger.debug('extract best match')
top_sample, results = ranked_comparisons[0]
return {
'sample_id': top_sample.sample_id,
'matches': results['match'],
'mismatches': results['mismatch'],
'unknowns': results['unknown']
}
