Exemple #1
0
def view_job(request, id):
    job = Job.objects.get(id=id)

    # xml_string = job.parameters
    ui_holder = UIModulesHolder(UIModulesHolder.XML, xml_parse(job.parameters.encode('utf-8')))
    forms = ui_holder.forms()
    
    return render(request, 'jobs/view.html', {
        'id': id,
        'user': request.user,
        'job': job,
        'ui_holder': ui_holder,
        'forms': forms,
        'forms_size': len(forms)+1,
    })
Exemple #2
0
def _get_summary_as_text(id):
    def get_bandpass_filter(bp_filter_id):
        suffix = ''
        if bp_filter_id.endswith('_apparent'):
            bp_filter_id = bp_filter_id[:-len('apparent')-1]
            suffix = 'apparent'
        elif bp_filter_id.endswith('_absolute'):
            bp_filter_id = bp_filter_id[:-len('absolute')-1]
            suffix = 'absolute'
        obj = BandPassFilter.objects.get(id=bp_filter_id)
        return obj.label + ' (' + suffix.capitalize() + ')'

    def format_redshit(redshift):
        whole_digits = int(redshift)
        return round(redshift, max(5-whole_digits, 0))

    def display_range(label, min, max):
        if max is not None and min is not None:
            return min + ' ' + u'\u2264' + ' ' + label + ' ' + u'\u2264' + ' ' + max
        elif max is None:
            return min + ' ' + u'\u2264' + ' ' + label
        else:
            return label + ' ' + u'\u2264' + ' ' + max

    def display_selection(filter_id, min, max):
        if filter_id.startswith('D-'):
            filter_id = filter_id[2:]
            obj = DataSetProperty.objects.get(id=filter_id)
            return display_range(obj.label + ' (' + obj.units + ')', min, max)
        elif filter_id.startswith('B-'): # bandpass filter_id looks like B-12_apparent
            filter_id = filter_id[2:]
            filter_label = get_bandpass_filter(filter_id)
            return display_range(filter_label, min, max)
        else:
            return 'No Filter'

    job = Job.objects.get(pk=id)
    ui_holder = UIModulesHolder(UIModulesHolder.XML, xml_parse(job.parameters.encode('utf-8')))

    if ui_holder.job_type == UIModulesHolder.SQL_JOB:
        txt_template = loader.get_template('jobs/sql_job-summary.txt')
        query = ui_holder.raw_data('sql_job', 'query')
        dataset = ui_holder.dataset
        simulation = dataset.simulation
        galaxy_model = dataset.galaxy_model
        output_properties = []
        for output_property in ui_holder.raw_data('sql_job', 'output_properties'):
            output_properties = output_properties + [(output_property['label'], output_property['units'])]
        output_format = ''
        for x in output_formats():
            if x['value'] == (ui_holder.raw_data('output_format', 'supported_formats')):
                output_format = x['text']
        context = Context({
            'query': query,
            'dark_matter_simulation': simulation,
            'simulation_details': html2text.html2text(simulation.details),
            'galaxy_model': galaxy_model,
            'galaxy_model_details': html2text.html2text(galaxy_model.details),
            'output_properties': output_properties,
            'output_format': output_format,})
    else:
        geometry = ui_holder.raw_data('light_cone', 'catalogue_geometry')
        dataset = ui_holder.dataset
        simulation = dataset.simulation
        galaxy_model = dataset.galaxy_model
        output_properties = []
        for output_property_id in ui_holder.raw_data('light_cone', 'output_properties'):
            output_property = DataSetProperty.objects.get(id=output_property_id)
            units = html2text.html2text(output_property.units).rstrip()
            output_properties = output_properties + [(output_property, units)]
        # output_properties = [(DataSetProperty.objects.get(id=output_property_id), html2text.html2text(getattr(DataSetProperty.objects.get(id=output_property_id), 'units')).rstrip()) for output_property_id in ui_holder.raw_data('light_cone', 'output_properties')]
        output_format = ''
        for x in output_formats():
            if x['value'] == (ui_holder.raw_data('output_format', 'supported_formats')):
                output_format = x['text']

        txt_template = loader.get_template('jobs/light_cone_job-summary.txt')
        context = Context({
            'catalogue_geometry': geometry,
            'dark_matter_simulation': simulation,
            'simulation_details': html2text.html2text(simulation.details),
            'galaxy_model': galaxy_model,
            'galaxy_model_details': html2text.html2text(galaxy_model.details),
            'output_properties': output_properties,
            'record_filter': display_selection(ui_holder.raw_data('record_filter', 'filter'), ui_holder.raw_data('record_filter', 'min'), ui_holder.raw_data('record_filter', 'max')),
            'output_format': output_format,
        })
        if geometry == 'light-cone':
            ra_opening_angle = ui_holder.raw_data('light_cone', 'ra_opening_angle')
            dec_opening_angle = ui_holder.raw_data('light_cone', 'dec_opening_angle')
            context['ra_opening_angle'] = ra_opening_angle
            context['dec_opening_angle'] = dec_opening_angle
            context['redshift_min'] = ui_holder.raw_data('light_cone', 'redshift_min')
            context['redshift_max'] = ui_holder.raw_data('light_cone', 'redshift_max')
            context['number_of_light_cones'] = ui_holder.raw_data('light_cone', 'number_of_light_cones')
            context['light_cone_type'] = ui_holder.raw_data('light_cone', 'light_cone_type')
        else:
            snapshot = Snapshot.objects.get(id=ui_holder.raw_data('light_cone', 'snapshot')).redshift
            context['box_size'] = ui_holder.raw_data('light_cone', 'box_size')
            context['snapshot'] = format_redshit(snapshot)

        if ui_holder.raw_data('sed', 'apply_sed'):
            single_stellar_population_model = StellarModel.objects.get(id=ui_holder.raw_data('sed', 'single_stellar_population_model'))
            band_pass_ids = ui_holder.raw_data('sed', 'band_pass_filters')
            context['apply_sed'] = True
            context['ssp_name'] = single_stellar_population_model
            context['ssp_description'] = html2text.html2text(single_stellar_population_model.description)
            context['band_pass_filters'] = [get_bandpass_filter(band_pass_id) for band_pass_id in band_pass_ids]
            if ui_holder.raw_data('sed', 'apply_dust'):
                dust_model = DustModel.objects.get(id=ui_holder.raw_data('sed', 'select_dust_model'))
                context['dust_label'] = dust_model
                context['dust_model_details'] = html2text.html2text(dust_model.details)
            else:
                context['dust_label'] = 'None'

        else:
            context['apply_sed'] = False
        if ui_holder.raw_data('mock_image', 'apply_mock_image'):
            context['number_of_images'] = ui_holder.raw_data('mock_image', 'TOTAL_FORMS')
            images = []
            for i in xrange(0, context['number_of_images']):
                image = {} 
                image['fov_dec'] = ui_holder.raw_data('mock_image', '%d-fov_dec' % i)
                image['sub_cone'] = ui_holder.raw_data('mock_image', '%d-sub_cone' % i)
                image['height'] = ui_holder.raw_data('mock_image', '%d-height' % i)
                image['origin_ra'] = ui_holder.raw_data('mock_image', '%d-origin_ra' % i)
                image['min_mag'] = ui_holder.raw_data('mock_image', '%d-min_mag' % i)
                image['origin_dec'] = ui_holder.raw_data('mock_image', '%d-origin_dec' % i)
                image['width'] = ui_holder.raw_data('mock_image', '%d-width' % i)
                image['z_min'] = ui_holder.raw_data('mock_image', '%d-z_min' % i)
                image['max_mag'] = ui_holder.raw_data('mock_image', '%d-max_mag' % i)
                image['z_max'] = ui_holder.raw_data('mock_image', '%d-z_max' % i)
                image['fov_ra'] = ui_holder.raw_data('mock_image', '%d-fov_ra' % i)
                image['format'] = ui_holder.raw_data('mock_image', '%d-format' % i)
                mag_fields = ui_holder.raw_data('mock_image','%d-mag_field' % i).split('_')
                mag_field = BandPassFilter.objects.get(pk=mag_fields[0]).label
                mag_field += ' (%s)' % mag_fields[1].title()
                image['mag_field'] = mag_field
                images.append(image)
            context['images'] = images
        else:
            context['number_of_images'] = None
    return txt_template.render(context)
def index(request):
    user = request.user
    if not user.check_disk_usage_within_quota():
        message = (
            "Please reduce your disk usage below " + user.display_user_disk_quota() + ". "
            'If you would like additional quota, please <a href="' + reverse("support_page") + '">submit</a> '
            "a request with the reason for the request."
        )
        messages.info(request, mark_safe(message))
        # return jobs.index(request)
        return redirect(reverse("job_index"))

    if request.method == "POST":
        if len(request.FILES) > 0:
            parameter_file = request.FILES.itervalues().next()
            ui_holder = UIModulesHolder(UIModulesHolder.POST)
            try:
                if parameter_file.content_type != "text/xml":
                    raise Exception("Wrong mime-type")
                params_ui_holder = UIModulesHolder(UIModulesHolder.XML, xml_parse(parameter_file.read()))
                message = "Parameter file '%s' uploaded successfully." % parameter_file.name
                messages.info(request, message)
                return render(
                    request,
                    "mock_galaxy_factory/index.html",
                    {
                        "forms": ui_holder.forms(),
                        "ui_holder": params_ui_holder,
                        "TAB_SUMMARY_ID": settings.MODULE_INDICES["summary"],
                    },
                )
            except:
                message = "Failed to process parameter file: '%s'." % parameter_file.name
                messages.error(request, message)
                return render(
                    request,
                    "mock_galaxy_factory/index.html",
                    {
                        "forms": ui_holder.forms(),
                        # 'ui_holder': params_ui_holder,
                        "TAB_SUMMARY_ID": settings.MODULE_INDICES["summary"],
                    },
                )
        elif "survey_presets" in request.POST:
            preset = SurveyPreset.objects.get(pk=request.POST.get("survey_presets"))
            params_ui_holder = UIModulesHolder(UIModulesHolder.XML, xml_parse(preset.parameters.encode()))
            ui_holder = UIModulesHolder(UIModulesHolder.POST)
            message = "Survey Preset '%s' loaded successfully." % preset.name
            messages.info(request, message)
            return render(
                request,
                "mock_galaxy_factory/index.html",
                {
                    "forms": ui_holder.forms(),
                    "ui_holder": params_ui_holder,
                    "TAB_SUMMARY_ID": settings.MODULE_INDICES["summary"],
                },
            )
        else:
            ui_holder = UIModulesHolder(UIModulesHolder.POST, request.POST)
            response_dict = {}
            response_dict["job_submitted"] = False
            if ui_holder.validate():
                UserModel = get_user_model()
                user = UserModel.objects.get(username=request.user.username)
                job_description = request.POST.get("job-description")
                response_dict["job_id"] = workflow.save(user, ui_holder, job_description).pk
                messages.info(request, _(settings.INITIAL_JOB_MESSAGE % models.initial_job_status().lower()))
                response_dict["job_submitted"] = True
                response_dict["next_page"] = reverse("job_index")
            else:
                response_dict["errors"] = ui_holder.errors
            # Simple answer the errors dictionary
            # If the dictionary is empty, the client knows the job was created successfully
            response = json.dumps(response_dict)
            callback = request.GET.get("callback", None)
            if callback is not None:
                response = "%s(%s)" % (callback, response)
            return HttpResponse(response, mimetype="application/json")

    # Assume GET
    ui_holder = UIModulesHolder(UIModulesHolder.POST)
    return render(
        request,
        "mock_galaxy_factory/index.html",
        {
            "forms": ui_holder.forms(),
            # 'forms_size' : len(ui_holder.forms())+1,
            "TAB_SUMMARY_ID": settings.MODULE_INDICES["summary"],
        },
    )