def test_output_flat(self):
self.args += [
'--results', get_output_path(self.output_path),
'--out', 'flat',
self.get_data('yeast-gi.qr'),
]
run_command(self.args)
def test_simple(self):
self.args += [
'--results',
get_output_path(self.output_path),
self.get_data('yeast-all.qr'),
]
run_command(self.args)
def test_func(self):
self.args += [
'--results',
get_output_path(self.output_path),
self.get_data(file),
]
run_command(self.args)
def test_multiple(self):
self.args += [
'--results', get_output_path(self.output_path),
self.get_data('yeast-gi.qr'),
self.get_data('yeast-gi.qr'),
]
run_command(self.args)
def test_multiple_parallel(self):
self.args += [
'--results', get_output_path(self.output_path),
'--threads', '2',
self.get_data('yeast-gi.qr'),
self.get_data('yeast-gi.qr'),
]
run_command(self.args)
def test_output_flat(self):
self.args += [
'--results',
get_output_path(self.output_path),
'--out',
'flat',
self.get_data('yeast-gi.qr'),
]
run_command(self.args)
def test_multiple_parallel(self):
self.args += [
'--results',
get_output_path(self.output_path),
'--threads',
'2',
self.get_data('yeast-gi.qr'),
self.get_data('yeast-gi.qr'),
]
run_command(self.args)
def test_empty(self):
self.args += [
'--results',
get_output_path(self.output_path),
]
run_command(self.args)
def run_query(self, data_path, file, output_type):
run_command(self.args + [
'--data', data_path,
'--results', get_output_path(self.output_path, output_type),
self.get_data(file),
])
def test_func(self):
self.args += [
'--results', get_output_path(self.output_path),
self.get_data(file),
]
run_command(self.args)
def test_empty(self):
self.args += [
'--results', get_output_path(self.output_path),
]
run_command(self.args)
