def test_namespace_name_persistience(self, mock_get):
"""Tests that a namespace defined by a URL can't be overwritten by a definition by another URL"""
s = 'DEFINE NAMESPACE {} AS URL "{}"'.format(HGNC_KEYWORD, HGNC_URL)
self.parser.parseString(s)
help_check_hgnc(self, self.parser.namespace_dict)
s = 'DEFINE NAMESPACE {} AS URL "{}"'.format(HGNC_KEYWORD, 'XXXXX')
with self.assertRaises(RedefinedNamespaceError):
self.parser.parseString(s)
help_check_hgnc(self, self.parser.namespace_dict)
def test_namespace_name_persistience(self, mock_get):
"""Test that a namespace defined by a URL can't be overwritten by a definition by another URL."""
s = NAMESPACE_URL_FMT.format(HGNC_KEYWORD, HGNC_URL)
self.parser.parseString(s)
help_check_hgnc(self, self.parser.namespace_to_term_to_encoding)
s = NAMESPACE_URL_FMT.format(HGNC_KEYWORD, 'XXXXX')
with self.assertRaises(RedefinedNamespaceError):
self.parser.parseString(s)
help_check_hgnc(self, self.parser.namespace_to_term_to_encoding)
def test_squiggly_filepath(self):
line = 'DEFINE NAMESPACE {} AS URL "~/dev/pybel/src/pybel/testing/resources/belns/hgnc-human-genes.belns"'.format(
HGNC_KEYWORD)
self.parser.parseString(line)
help_check_hgnc(self, self.parser.namespace_dict)
def test_squiggly_filepath(self):
line = NAMESPACE_URL_FMT.format(HGNC_KEYWORD, LOCAL_TEST_PATH)
self.parser.parseString(line)
help_check_hgnc(self, self.parser.namespace_to_term_to_encoding)
def test_squiggly_filepath(self):
line = NAMESPACE_URL_FMT.format(
HGNC_KEYWORD,
"~/dev/pybel/src/pybel/testing/resources/belns/hgnc-names.belns")
self.parser.parseString(line)
help_check_hgnc(self, self.parser.namespace_to_term)