def test_isatab2cedar_convert_mtbls3(self):
test_case = 'MTBLS3'
isa2cedar = ISATab2CEDAR("http://www.isa-tools.org/")
isa2cedar.createCEDARjson(os.path.join(self._tab_data_dir, test_case), self._tmp_dir, True)
expected_json = json.load(open(os.path.join(self._json_data_dir, 'cedar', test_case + '.json')))
actual_json = json.load(open(os.path.join(self._tmp_dir, test_case + '.json')))
utils.strip_ids(expected_json)
utils.strip_ids(actual_json)
self.assertTrue(utils.assert_json_equal(expected_json, actual_json))
def test_isatab2cedar_convert_mtbls1(self):
test_case = 'MTBLS1'
isa2cedar = ISATab2CEDAR("http://www.isa-tools.org/")
isa2cedar.createCEDARjson(os.path.join(self._tab_data_dir, test_case),
self._tmp_dir, True)
with open(os.path.join(self._json_data_dir, 'cedar', test_case + '.json')) as expected_file, \
open(os.path.join(self._tmp_dir, '1425901783014' + '.json')) as actual_file:
expected_json = json.load(expected_file)
actual_json = json.load(actual_file)
utils.strip_ids(expected_json)
utils.strip_ids(actual_json)
self.assertTrue(utils.assert_json_equal(expected_json,
actual_json))
def test_isatab2cedar_convert_charac_param_factor(self):
test_case = 'TEST-ISA-charac-param-factor'
isa2cedar = ISATab2CEDAR("http://www.isa-tools.org/")
isa2cedar.createCEDARjson(os.path.join(self._tab_data_dir, test_case),
self._tmp_dir, True)
with open(os.path.join(self._json_data_dir, 'cedar', test_case + '.json')) as expected_file, \
open(os.path.join(self._tmp_dir, test_case + '.json')) as actual_file:
expected_json = json.load(expected_file)
actual_json = json.load(actual_file)
utils.strip_ids(expected_json)
utils.strip_ids(actual_json)
self.assertTrue(utils.assert_json_equal(expected_json,
actual_json))