def main(argv):
if len(argv) > 1:
raise RuntimeError(argv[1:])
absl_logging.use_python_logging()
utils.check_contained(_FLAG_APPROACH_TYPE.value, _ACCEPTABLE_APPROACHES)
utils.check_operator(operator.xor, bool(_FLAG_H5_MODEL_PATH.value),
bool(_FLAG_CKPT_MODEL_PATH.value))
if _FLAG_H5_MODEL_PATH.value:
model_path = _FLAG_H5_MODEL_PATH.value
mode = constants.SaveModeChoices.hfh5
elif _FLAG_CKPT_MODEL_PATH.value:
model_path = _FLAG_CKPT_MODEL_PATH.value
mode = constants.SaveModeChoices.ckpt
else:
raise RuntimeError("Logically should never happen.")
utils.check_exists(model_path)
device_type = tf_utils.devices_to_use()[0].device_type
# ONLY GPU IS SUPPORTED
utils.check_equal(device_type, "GPU")
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# Build the distribution strategy
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if device_type == "TPU":
# ONLY LOCAL TPU IS "SUPPORTED"
utils.check_isinstance(_FLAG_IS_LOCAL_TPU.value, bool)
assert _FLAG_IS_LOCAL_TPU.value
tpu_config = tf_utils.init_tpus(local=True)
utils.check_isinstance(tpu_config, tf_utils.TpuConfigType)
utils.check_not_none(tpu_config)
strategy = tf.distribute.TPUStrategy(tpu_config.resolver)
elif device_type == "GPU":
strategy = tf.distribute.MirroredStrategy(
devices=tf.config.experimental.list_logical_devices('GPU'))
else:
raise RuntimeError(device_type)
# ONLY GPU IS SUPPORTED
print(tf.config.list_logical_devices())
utils.check_isinstance(strategy, tf.distribute.MirroredStrategy)
##############################################################################
# Load Model
##############################################################################
with utils.log_duration(LOGGER, main.__name__, "All of model preparation"):
with strategy.scope():
# HF isn't able to read directly from GCS
if (model_path.startswith("gs://")
and mode == constants.SaveModeChoices.hfh5):
with utils.log_duration(LOGGER, main.__name__,
"Download model from GS"):
with tempfile.TemporaryDirectory() as td:
td += os.path.sep
if os.path.exists("/root/google-cloud-sdk/bin/gsutil"):
exec_ = "/root/google-cloud-sdk/bin/gsutil"
else:
exec_ = "gsutil"
command = [
exec_,
"-m",
"cp",
"-r",
os.path.join(model_path, "*"),
td,
]
LOGGER.debug("Running bash command: %s",
" ".join(command))
subprocess.check_call(command)
LOGGER.debug("Files at the temp dir(%s): %s", td,
str(os.listdir(td)))
model = make_model_tf(td, mode=mode)
else:
model = make_model_tf(model_path, mode=mode)
utils.check_not_none(model)
##############################################################################
# Load Dataset Pipeline
##############################################################################
utils.check_contained(
_FLAG_APPROACH_TYPE.value, {
constants.ApproachTypeChoices.naked_lm,
constants.ApproachTypeChoices.cached_pretok
})
devices = tf_utils.devices_to_use()
num_replicas = (len(devices)
if devices[0].device_type in {"GPU", "TPU"} else 1)
utils.check_equal(devices[0].device_type, "GPU")
# Only a batch size of 1 is currently supported. We need attention masks
batch_size = _FLAG_BATCH_SIZE.value * num_replicas
approach_type = _FLAG_APPROACH_TYPE.value
logging.debug("Loading dataset.")
tokenizer = transformers.GPT2TokenizerFast.from_pretrained("gpt2-xl")
ds = prep_ds_for_generation(
dict(
tokenizer=tokenizer,
context_window_size=1024,
dataset_name="kilt_eli5",
batch_size=1, # >> We set our own batch size elsewhere
db_path=None, # None,
random_seed=0,
use_subset=False,
subset_size=-1,
use_helper_words=True,
approach_type=approach_type,
num_retrievals=5, # Will never change
retrieval_temperature=1.,
retriever=None, # Cached retrievals don't need a retriever
repeat=False, # Will never change
split=_FLAG_SPLIT.value,
enable_debug_checks=False,
retrieval_bank_size=5, # Will never change
dataset_type=_FLAG_DATASET_TYPE.value,
tfr_prefix=_FLAG_TFR_PREFIX.value,
qty_shuffle=1, # Will never change
max_length_generation=350),
tokenizer,
_FLAG_SPLIT.value)
ds = strategy.experimental_distribute_dataset(ds)
##############################################################################
# Generate
##############################################################################
LOGGER.debug("Generating.")
generations = []
num_entries_in_split = (
task_specific.DATASET_CARDINALITIES["kilt_eli5"][_FLAG_SPLIT.value])
entries_counter = tqdm.tqdm(total=num_entries_in_split)
for batch_no, batch in enumerate(ds):
# Calling model.generate. We should make a config file with the
# hyperparameters for generation, or make a facility in the one we already
# have. I feel like a separate one would be better, separating concerns.
output = strategy.run(
model.generate,
kwargs=dict(
input_ids=batch,
max_length=_FLAG_GENERATION_LENGTH_LIMIT.value,
use_cache=True,
attention_mask=tf.cast(batch != tokenizer.eos_token_id,
tf.int32),
repetition_penalty=2.,
num_beams=5,
))
output = tf_utils.process_strat_output(strategy_outputs=output,
current_batch_size=batch_size,
strategy=strategy,
name="generations")
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# Display the inputs and outputs.
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rich_console = rich.console.Console(color_system="256")
print_sample = make_print_sample()
with utils.log_duration(LOGGER, "main",
"all of tokenizer.decode for a batch."):
for i in range(batch_size):
input_text = tokenizer.decode(batch.numpy()[i])
output_text = tokenizer.decode(output.numpy()[i])
print("#" * 1000)
print(f"Batch {batch_no} Generation {i}")
print_sample(input_text, f"input batch_no {batch_no}",
rich_console)
print_sample(output_text, f"output batch_no {batch_no}",
rich_console)
generations.append(output_text)
print("#" * 1000)
entries_counter.update(batch.shape[0])
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# Save the output to a JSON File.
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
utils.to_json_file(
os.path.join(_FLAG_OUTPUT_PATH.value, _FLAG_SPLIT.value,
_FLAG_APPROACH_TYPE.value,
time.strftime("%Y%m%d-%H%M%S.json")),
dict(flags={
flag.name: flag.value
for flag in flags.FLAGS.flags_by_module_dict()[argv[0]]
},
generations=generations))
logging.debug("Saved to: %s", _FLAG_OUTPUT_PATH.value)
def main(argv):
if len(argv) > 1:
raise RuntimeError(argv[1:])
absl_logging.use_python_logging()
utils.check_contained(_FLAG_APPROACH_TYPE.value, _ACCEPTABLE_APPROACHES)
db_path = _FLAG_DB_PATH.value
model_path = _FLAG_MODEL_PATH.value
tpu_config = tf_utils.init_tpus()
device_type = tf_utils.devices_to_use()[0].device_type
if device_type == "TPU":
assert isinstance(tpu_config, tf_utils.TpuConfigType)
strategy = tf.distribute.TPUStrategy(tpu_config.resolver)
elif device_type == "GPU" or "CPU":
# MirroredStrategy automatically becomes OneDeviceStrategy if there is
# just one device, like one GPU or only CPUs.
strategy = tf.distribute.MirroredStrategy()
else:
raise RuntimeError()
##############################################################################
# Load Model
##############################################################################
with utils.log_duration(LOGGER, main.__name__, "All of model preparation"):
def make_model_tf(path):
with utils.log_duration(LOGGER, make_model_tf.__name__,
"Load model."):
if os.path.exists(path):
config_path = os.path.join(path, "config.json")
model_path = os.path.join(path, "tf_model.h5")
utils.check_exists(config_path)
utils.check_exists(model_path)
config = transformers.GPT2Config.from_pretrained(
config_path)
return transformers.TFGPT2LMHeadModel.from_pretrained(
model_path, config=config)
else:
return transformers.TFGPT2LMHeadModel.from_pretrained(
path, )
with strategy.scope():
if model_path.startswith("gs://"):
with utils.log_duration(LOGGER, main.__name__,
"Download model from GS"):
with tempfile.TemporaryDirectory() as td:
td += os.path.sep
if os.path.exists("/root/google-cloud-sdk/bin/gsutil"):
exec_ = "/root/google-cloud-sdk/bin/gsutil"
else:
exec_ = "gsutil"
command = [
exec_,
"-m",
"cp",
"-r",
os.path.join(model_path, "*"),
td,
]
LOGGER.debug("Running bash command: %s",
" ".join(command))
subprocess.check_call(command)
LOGGER.debug("Files at the temp dir(%s): %s", td,
str(os.listdir(td)))
model = make_model_tf(td)
else:
model = make_model_tf(model_path)
model.__call__ = tf.function(
model.__call__,
experimental_relax_shapes=True,
experimental_compile=True,
)
##############################################################################
# Load Dataset Pipeline
##############################################################################
utils.check_contained(
_FLAG_APPROACH_TYPE.value, {
constants.ApproachTypeChoices.naked_lm,
constants.ApproachTypeChoices.naked_lm
})
devices = tf_utils.devices_to_use()
num_replicas = len(devices) if devices[0].device_type in {"GPU", "TPU"
} else 1
# Only a batch size of 1 is currently supported. We need attention masks
utils.check_equal(_FLAG_BATCH_SIZE.value, 1)
batch_size = _FLAG_BATCH_SIZE.value * num_replicas
approach_type = _FLAG_APPROACH_TYPE.value
# Things that will never change:
random_seed = 0
use_helper_words = True
retrieval_temperature = 1
context_window_size = 1024
logging.debug("Loading dataset.")
tokenizer = transformers.GPT2TokenizerFast.from_pretrained("gpt2-xl")
ds = task_specific.create_lm_ds_kilt_eli5(
tokenizer=tokenizer,
context_window_size=context_window_size,
dataset_name="kilt_eli5",
batch_size=1, # >> We set our own batch size elsewhere
db_path=db_path,
random_seed=random_seed,
use_subset=False,
subset_size=-1,
use_helper_words=use_helper_words,
approach_type=approach_type,
num_retrievals=5, # Will never change
retrieval_temperature=retrieval_temperature,
retriever=None, # Cached retrievals don't need a retriever
repeat=False, # Will never change
split=_FLAG_SPLIT.value,
enable_debug_checks=False,
retrieval_bank_size=5, # Will never change
dataset_type=_FLAG_DATASET_TYPE.value,
tfr_prefix=_FLAG_TFR_PREFIX.value,
qty_shuffle=1, # Will never change
max_length_generation=_FLAG_GENERATION_LENGTH_LIMIT.value)
def further_prep_generate_not_test(batch):
batch = tf.boolean_mask(
batch["input_ids"],
tf.logical_and(batch["label_ids"] == -100,
batch["input_ids"] != tokenizer.eos_token_id))
return batch
@tf.function
def further_prep_generate_test(batch):
batch = tf.boolean_mask(batch["input_ids"],
batch["input_ids"] != tokenizer.eos_token_id)
return batch
if _FLAG_SPLIT.value == constants.SplitChoices.test:
ds = ds.map(further_prep_generate_test)
else:
ds = ds.map(further_prep_generate_not_test)
ds = ds.padded_batch(batch_size=batch_size,
padding_values=tokenizer.eos_token_id)
ds = strategy.experimental_distribute_dataset(ds)
##############################################################################
# Generate
##############################################################################
LOGGER.debug("Generating.")
generations = []
counter = tqdm.tqdm(ds,
total=task_specific.DATASET_CARDINALITIES["kilt_eli5"][
_FLAG_SPLIT.value])
for batch_no, batch in enumerate(counter):
output = strategy.run(
model.generate,
kwargs=dict(input_ids=batch,
max_length=_FLAG_GENERATION_LENGTH_LIMIT.value,
use_cache=True,
attention_mask=batch == tokenizer.eos_token_id))
LOGGER.debug("INPUT: %s", tokenizer.decode(batch[0]))
output = tf_utils.process_strat_output(strategy_outputs=output,
current_batch_size=batch_size,
strategy=strategy,
name="generations")
with utils.log_duration(LOGGER, "main",
"all of tokenizer.decode for a batch."):
for i in range(batch_size):
text = tokenizer.decode(output.numpy()[i])
LOGGER.debug("Batch %d Generation %d", batch_no, i)
LOGGER.debug(text.replace("\n", " <\\n> "))
generations.append(text)
counter.update(batch.shape[0])
utils.to_json_file(
os.path.join(_FLAG_OUTPUT_PATH.value, _FLAG_SPLIT.value,
_FLAG_APPROACH_TYPE.value,
time.strftime("%Y%m%d-%H%M%S.json")),
dict(flags={
flag.name: flag.value
for flag in flags.FLAGS.flags_by_module_dict()[argv[0]]
},
generations=generations))
logging.debug("Saved to: %s", _FLAG_OUTPUT_PATH.value)
def main(argv):
# Arguments and logging boilerplate
if len(argv) > 1:
raise RuntimeError(argv)
absl_logging.use_python_logging()
utils.log_module_args(LOGGER, argv[0])
# Load a retriever config.
retriever_config = tf_utils.REALMConfig(
**utils.from_json_file(_FLAG_RETRIEVER_CONFIG_PATH.value))
assert not _FLAG_USE_SUBSET.value
# Preparation of the output path
time_stamp = time.strftime("%Y%m%d-%H%M%S")
target_path = os.path.join(_FLAG_OUTPUT_PATH.value, time_stamp.strip())
if target_path[-1] != "/":
target_path += "/"
##############################################################################
# Setup devices and strategy
##############################################################################
# Duration is pretty much instantaneous
with utils.log_duration(LOGGER, "main", "Initializing devices"):
tpu_config = tf_utils.init_tpus(local=_FLAG_TPU_IS_LOCAL.value,
tpu_name=_FLAG_TPU_NAME.value)
device_type = tf_utils.current_accelerator_type()
LOGGER.debug("Devices: %s", str(tf_utils.devices_to_use()))
if _FLAG_TPU_NAME.value and device_type == "CPU":
raise RuntimeError("Device is CPU and we expected a TPU.")
if device_type == "TPU":
if tpu_config is None:
raise RuntimeError("We should have a tpu_config.")
strategy = tf.distribute.TPUStrategy(tpu_config.resolver)
batch_size = len(
tf_utils.devices_to_use()) * _FLAG_BATCH_SIZE.value
elif device_type == "GPU" or device_type == "CPU":
strategy = tf.distribute.MirroredStrategy()
batch_size = len(
tf_utils.devices_to_use()) * _FLAG_BATCH_SIZE.value
else:
raise RuntimeError(device_type)
##############################################################################
# Load the KILT ELI5 dataset.
##############################################################################
# Takes a while
eli5 = {}
keys = ["train", "validation", "test"]
gpt2_tokenizer = transformers.GPT2TokenizerFast.from_pretrained("gpt2-xl")
gpt2_tokenizer.pad_token = gpt2_tokenizer.eos_token
with utils.log_duration(LOGGER, "main", "Loading the ELI5 datasets."):
if _FLAG_DATASET_ROOT.value:
for split in tqdm.tqdm(keys):
load_path = os.path.join(_FLAG_DATASET_ROOT.value,
"HuggingfaceDatasets",
f"{split}_kilt_eli5.hf")
with tf.device("/job:localhost"):
eli5[split] = datasets.load_from_disk(load_path)
else:
eli5 = datasets.load_dataset("kilt_tasks", "eli5")
##############################################################################
# Load the dataset of the text that will be retrieved.
##############################################################################
# Takes a long time
with utils.log_duration(LOGGER, "Main", "Load the textual dataset"):
# Extract the appropriate text
# The buffer_size is taken from the original ORQA code.
blocks_dataset = tf.data.TFRecordDataset(retriever_config.text_records,
buffer_size=512 * 1024 * 1024)
blocks_dataset = blocks_dataset.batch(
retriever_config.num_block_records, drop_remainder=False)
blocks: tf.Tensor = tf.data.experimental.get_single_element(
blocks_dataset)
############################################################################
# Increase the number of maximum open file descriptors to make space
# for all the shards.
############################################################################
max_num_fd = _FLAG_NUM_SHARDS.value * 3 + _MIN_N_FD
resource.setrlimit(resource.RLIMIT_NOFILE, (max_num_fd, max_num_fd))
############################################################################
# Prepare the output files.
############################################################################
writers = {}
all_paths = {}
for split in keys:
maybe_subset = "_subset" if _FLAG_USE_SUBSET.value else ""
# Prepare paths. They can't be in a generator. A function generator would be
# fine though.
paths = [
os.path.join(target_path + maybe_subset, f"{split}_{i}.tfr")
for i in range(_FLAG_NUM_SHARDS.value)
]
all_paths[split] = paths
writers[split] = []
# Create The TFR writers.
for i, path in enumerate(paths):
writers[split].append(tf.io.TFRecordWriter(path))
# Load the reference DB. We used to accidentally do this once per split :O
with utils.log_duration(LOGGER, "main", "Loading the reference db."):
checkpoint_path = os.path.join(retriever_config.query_embedder_path,
"encoded", "encoded.ckpt")
reference_db_device = tf_utils.device_mapping().CPUs[0].name
with tf.device(reference_db_device):
reference_db = tf_utils.load_reference_db(
checkpoint_path,
variable_name="block_emb",
)
############################################################################
# Prep the encoder and the tokenizer
############################################################################
with utils.log_duration(LOGGER, "main",
"Loading the encoder model and the tokenizer."):
with strategy.scope():
query_encoder = hub.load(retriever_config.query_embedder_path,
tags={})
encode_fn = _make_encode_fn(query_encoder)
encode_fn_strategy_run = make_encode_fn_strategy_run_fn(
strategy=strategy,
encode_fn=encode_fn,
)
vocab_file = os.path.join(retriever_config.query_embedder_path,
"assets", "vocab.txt")
utils.check_exists(vocab_file)
do_lower_case = query_encoder.signatures["tokenization_info"](
)["do_lower_case"]
tokenization_info = dict(vocab_file=vocab_file,
do_lower_case=do_lower_case)
tokenizer, vocab_lookup_table = bert_utils.get_tf_tokenizer(
query_encoder, tokenization_info)
############################################################################
# Preprocess the dataset
############################################################################
cls_token_id = tf.cast(vocab_lookup_table.lookup(tf.constant("[CLS]")),
tf.int32)
sep_token_id = tf.cast(vocab_lookup_table.lookup(tf.constant("[SEP]")),
tf.int32)
transform = _make_transform_fn(
bert_tokenizer=tokenizer,
bert_cls_token_id=cls_token_id,
bert_sep_token_id=sep_token_id,
)
feature_dtypes = {
constants.CTH5Fields.distances: tf.float32,
constants.CTH5Fields.gpt2_retrieved_ids: tf.int32,
constants.CTH5Fields.gpt2_answer_ids_inputs: tf.int32,
constants.CTH5Fields.gpt2_question_ids_inputs: tf.int32,
}
with utils.log_duration(LOGGER, "main", "generating codes"):
for split in keys:
sample_count = 0
eli5: Dict[str, datasets.Dataset]
if split != "test":
for_slices = dict(sample_id=eli5[split]["id"],
question=eli5[split]["input"],
answer=[
sample[0]["answer"]
for sample in eli5[split]["output"]
])
else:
for_slices = dict(
sample_id=eli5[split]["id"],
question=eli5[split]["input"],
)
ds = tf.data.Dataset.from_tensor_slices(for_slices)
ds = ds.map(transform,
num_parallel_calls=tf.data.experimental.AUTOTUNE)
ds = ds.apply(
tf.data.experimental.dense_to_ragged_batch(batch_size))
ds = ds.map(_squeeze,
num_parallel_calls=tf.data.experimental.AUTOTUNE)
tqdm_inner = tqdm.tqdm(enumerate(ds),
total=len(eli5[split]["id"]) //
_FLAG_BATCH_SIZE.value,
desc=f"Split `{split}`: Batches")
for i, batch in tqdm_inner:
features = collections.defaultdict(list)
######################################################################
# Enforce the current real batch size
######################################################################
current_batch_size = batch["sample_id"].shape[0]
for k, v in batch.items():
utils.check_equal(v.shape[0], current_batch_size)
######################################################################
gpt2_question_ids_inputs = _prep_field(batch["question"],
gpt2_tokenizer)
utils.check_equal(gpt2_question_ids_inputs.dtype, np.int32)
utils.check_equal(gpt2_question_ids_inputs.shape[0],
current_batch_size)
if split != "test":
gpt2_answer_ids_inputs = _prep_field(
batch["answer"], gpt2_tokenizer)
utils.check_equal(gpt2_answer_ids_inputs.dtype, np.int32)
utils.check_equal(gpt2_answer_ids_inputs.shape[0],
current_batch_size)
assert len(gpt2_answer_ids_inputs.shape) == 2, (
gpt2_answer_ids_inputs.shape)
######################################################################
# Save the gpt2 tokenized question and answer
######################################################################
features[constants.CTH5Fields.gpt2_question_ids_inputs].extend(
gpt2_question_ids_inputs)
if split != "test":
features[
constants.CTH5Fields.gpt2_answer_ids_inputs].extend(
gpt2_answer_ids_inputs)
######################################################################
# Encode the samples.
######################################################################
batch = strategy.experimental_distribute_values_from_function(
tf_utils.make_dict_distribute_fn(batch))
embeddings = encode_fn_strategy_run(batch)
embeddings = tf_utils.process_strat_output(
embeddings, "embeddings", strategy, current_batch_size)
utils.check_isinstance(embeddings, ops.EagerTensor)
utils.check_equal(embeddings.shape[0], current_batch_size)
# pytype doesn't seem to see that we check the type
utils.check_equal(embeddings.shape[1],
_FLAG_EMBEDDING_DEPTH.value) # pytype: disable=attribute-error
######################################################################
# Retrieve.
######################################################################
# Do exact retrieval
with tf.device(reference_db_device):
top_k, inner_prods = tf_utils.mips_exact_search(
embeddings, _FLAG_NUM_RETRIEVALS.value, reference_db)
# Collate the results
top_k = tf_utils.process_strat_output(top_k, "top_k", strategy,
current_batch_size)
# Check the shapes
utils.check_equal(
inner_prods.shape,
(current_batch_size, _FLAG_NUM_RETRIEVALS.value))
utils.check_equal(
top_k.shape,
(current_batch_size, _FLAG_NUM_RETRIEVALS.value))
# Save the distances
features[constants.CTH5Fields.distances].extend(inner_prods)
# Retrieve the text fields associated to the indices
gathered = tf.gather(blocks, top_k).numpy()
utils.check_equal(gathered.shape[0], current_batch_size)
utils.check_equal(gathered.shape[1],
_FLAG_NUM_RETRIEVALS.value)
retrievals = []
for index_in_batch in range(current_batch_size):
# Put the appropriate byte strings in a list
local_gathered = gathered[index_in_batch].tolist()
utils.check_equal(len(local_gathered),
_FLAG_NUM_RETRIEVALS.value)
# Decode to utf-8
local_gathered = [
sample.decode() for sample in local_gathered
]
# Encode to GPT2 BPE
token_ids = np.array(
gpt2_tokenizer.batch_encode_plus(
local_gathered,
padding="max_length",
truncation=True,
).input_ids)
# Make sure no line is empty
# TODO(julesgm): Maybe optional
for line in token_ids:
assert not np.all(line == 0), line
# Convert the eos_tokens
token_ids[token_ids == gpt2_tokenizer.eos_token_id] = -1
# Save the retrievals
retrievals.append(token_ids)
# Save the feature
features[constants.CTH5Fields.gpt2_retrieved_ids] = retrievals
utils.check_equal(
retrievals[0].shape,
(_FLAG_NUM_RETRIEVALS.value, _FLAG_CONTEXT_SIZE.value))
for k, v in features.items():
utils.check_equal(len(v), current_batch_size)
for index_in_batch in range(current_batch_size):
feature_dict = {}
for feature_k, feature_v in features.items():
# Cast the feature to its appropriate dtype
casted_feats = tf.cast(feature_v[index_in_batch],
feature_dtypes[feature_k])
# Serialize the tensor to bytes
feature_bytes = tf.io.serialize_tensor(casted_feats)
# Build a bytes list tf.train.Feature object,
# the serialization tree node
feature_dict[feature_k] = _bytes_feature(feature_bytes)
# Create the serialization tree root
# Expects a list of features
feature = tf.train.Features(feature=feature_dict)
# Expects a tf.train.Features object
example_obj = tf.train.Example(features=feature)
# Serialize that to bytes
serialized_example = example_obj.SerializeToString()
# Write the bytes
# TODO(julesgm): Parallelize this with a thread or a process pool &
# futures.
writers[split][sample_count %
_FLAG_NUM_SHARDS.value].write(
serialized_example)
sample_count += 1
if sample_count % 1000 == 0:
LOGGER.debug("Paths: %s", str(all_paths[split][0]))
LOGGER.debug("Flushing and closing the `%s` writers", split)
for writer in tqdm.tqdm(writers[split]):
writer.flush()
writer.close()
LOGGER.debug("Done.")
def main(argv):
if len(argv) > 1:
raise RuntimeError(argv)
absl_logging.use_python_logging()
utils.log_module_args(LOGGER, argv[0])
retriever_config = tf_utils.REALMSave(
**utils.from_json_file(_FLAG_RETRIEVER_CONFIG_PATH.value))
assert not _FLAG_USE_SUBSET.value
time_stamp = time.strftime("%Y%m%d-%H%M%S")
target_path = os.path.join(_FLAG_OUTPUT_PATH.value, time_stamp.strip())
if target_path[-1] != "/":
target_path += "/"
##############################################################################
# Setup devices and strategy
##############################################################################
with utils.log_duration(LOGGER, "main", "Initializing devices"):
tpu_config = tf_utils.init_tpus()
device_type = tf_utils.current_accelerator_type()
LOGGER.debug("Devices: %s", str(tf_utils.devices_to_use()))
if device_type == "TPU":
if tpu_config is None:
raise RuntimeError("We should have a tpu_config.")
strategy = tf.distribute.TPUStrategy(tpu_config.resolver)
batch_size = len(
tf_utils.devices_to_use()) * _FLAG_BATCH_SIZE.value
elif device_type == "GPU" or device_type == "CPU":
strategy = tf.distribute.MirroredStrategy()
batch_size = len(
tf_utils.devices_to_use()) * _FLAG_BATCH_SIZE.value
else:
raise RuntimeError(device_type)
##############################################################################
# Load the dataset.
##############################################################################
eli5 = {}
keys = ["train", "eval", "test"]
gpt2_tokenizer = transformers.GPT2TokenizerFast.from_pretrained("gpt2-xl")
gpt2_tokenizer.pad_token = gpt2_tokenizer.eos_token
with utils.log_duration(LOGGER, "main", "Loading the ELI5 datasets."):
for split in tqdm.tqdm(keys):
load_path = os.path.join(_FLAG_DATASET_ROOT.value,
"HuggingfaceDatasets",
f"{split}_kilt_eli5.hf")
with tf.device("/job:localhost"):
eli5[split] = datasets.load_from_disk(load_path)
##############################################################################
#
##############################################################################
with utils.log_duration(LOGGER, "Main", "Load the textual dataset"):
# Extract the appropriate text
# The buffer_size is taken from the original ORQA code.
blocks_dataset = tf.data.TFRecordDataset(retriever_config.text_records,
buffer_size=512 * 1024 * 1024)
blocks_dataset = blocks_dataset.batch(
retriever_config.num_block_records, drop_remainder=True)
blocks = tf.data.experimental.get_single_element(blocks_dataset)
############################################################################
# Prepare the output file.
############################################################################
writers = {}
all_paths = {}
for split in keys:
maybe_subset = "_subset" if _FLAG_USE_SUBSET.value else ""
paths = [
os.path.join(target_path + maybe_subset, f"{split}_{i}.tfr")
for i in range(_FLAG_NUM_SHARDS.value)
]
all_paths[split] = paths
writers[split] = [tf.io.TFRecordWriter(filename) for filename in paths]
with utils.log_duration(LOGGER, "main", "Loading the reference db."):
checkpoint_path = os.path.join(
retriever_config.query_embedder_path, "encoded",
"encoded.ckpt")
reference_db_device = tf_utils.device_mapping().CPUs[0].name
with tf.device(reference_db_device):
reference_db = tf_utils.load_reference_db(
checkpoint_path,
variable_name="block_emb",
)
############################################################################
# Prep the encoder and the tokenizer
############################################################################
with utils.log_duration(LOGGER, "main",
"Loading the encoder model and the tokenizer."):
with strategy.scope():
query_encoder = hub.load(retriever_config.query_embedder_path,
tags={})
encode_fn = _make_encode_fn(query_encoder)
encode_fn_strategy_run = make_encode_fn_strategy_run_fn(
strategy=strategy,
encode_fn=encode_fn,
)
vocab_file = os.path.join(retriever_config.query_embedder_path,
"assets", "vocab.txt")
utils.check_exists(vocab_file)
do_lower_case = query_encoder.signatures["tokenization_info"](
)["do_lower_case"]
tokenization_info = dict(vocab_file=vocab_file,
do_lower_case=do_lower_case)
tokenizer, vocab_lookup_table = bert_utils.get_tf_tokenizer(
query_encoder, tokenization_info)
############################################################################
# Preprocess the dataset
############################################################################
cls_token_id = tf.cast(vocab_lookup_table.lookup(tf.constant("[CLS]")),
tf.int32)
sep_token_id = tf.cast(vocab_lookup_table.lookup(tf.constant("[SEP]")),
tf.int32)
transform = _make_transform_fn(
bert_tokenizer=tokenizer,
bert_cls_token_id=cls_token_id,
bert_sep_token_id=sep_token_id,
)
feature_dtypes = {
constants.CTH5Fields.distances: tf.float32,
constants.CTH5Fields.gpt2_retrieved_ids: tf.int32,
constants.CTH5Fields.gpt2_answer_ids_inputs: tf.int32,
constants.CTH5Fields.gpt2_question_ids_inputs: tf.int32,
}
with utils.log_duration(LOGGER, "main", "generating codes"):
for split in keys:
sample_count = 0
eli5: Dict[str, datasets.Dataset]
if split != "test":
for_slices = dict(sample_id=eli5[split]["id"],
question=eli5[split]["input"],
answer=[
sample["answer"][0]
for sample in eli5[split]["output"]
])
else:
for_slices = dict(
sample_id=eli5[split]["id"],
question=eli5[split]["input"],
)
ds = tf.data.Dataset.from_tensor_slices(for_slices)
ds = ds.map(transform,
num_parallel_calls=tf.data.experimental.AUTOTUNE)
ds = ds.apply(
tf.data.experimental.dense_to_ragged_batch(batch_size))
ds = ds.map(_squeeze,
num_parallel_calls=tf.data.experimental.AUTOTUNE)
tqdm_inner = tqdm.tqdm(enumerate(ds),
total=len(eli5[split]["id"]) //
_FLAG_BATCH_SIZE.value,
desc=f"Split `{split}`: Batches")
for i, batch in tqdm_inner:
features = collections.defaultdict(list)
######################################################################
# Enforce the current real batch size
######################################################################
current_batch_size = batch["sample_id"].shape[0]
for k, v in batch.items():
utils.check_equal(v.shape[0], current_batch_size)
######################################################################
gpt2_question_ids_inputs = _prep_field(batch["question"],
gpt2_tokenizer)
utils.check_equal(gpt2_question_ids_inputs.dtype, np.int32)
utils.check_equal(gpt2_question_ids_inputs.shape[0],
current_batch_size)
if split != "test":
gpt2_answer_ids_inputs = _prep_field(
batch["answer"], gpt2_tokenizer)
utils.check_equal(gpt2_answer_ids_inputs.dtype, np.int32)
utils.check_equal(gpt2_answer_ids_inputs.shape[0],
current_batch_size)
assert len(gpt2_answer_ids_inputs.shape) == 2, (
gpt2_answer_ids_inputs.shape)
######################################################################
# Save the gpt2 tokenized question and answer
######################################################################
features[constants.CTH5Fields.gpt2_question_ids_inputs].extend(
gpt2_question_ids_inputs)
if split != "test":
features[
constants.CTH5Fields.gpt2_answer_ids_inputs].extend(
gpt2_answer_ids_inputs)
######################################################################
# Encode the samples.
######################################################################
batch = strategy.experimental_distribute_values_from_function(
tf_utils.make_dict_distribute_fn(batch))
embeddings = encode_fn_strategy_run(batch)
embeddings = tf_utils.process_strat_output(
embeddings, "embeddings", strategy, current_batch_size)
utils.check_isinstance(embeddings, ops.EagerTensor)
utils.check_equal(embeddings.shape[0], current_batch_size)
# pytype doesn't seem to see that we check the type
utils.check_equal(embeddings.shape[1],
_FLAG_EMBEDDING_DEPTH.value) # pytype: disable=attribute-error
######################################################################
# Retrieve.
######################################################################
with tf.device(reference_db_device):
top_k, inner_prods = tf_utils.mips_exact_search(
embeddings, _FLAG_NUM_RETRIEVALS.value, reference_db)
top_k = tf_utils.process_strat_output(top_k, "top_k", strategy,
current_batch_size)
utils.check_equal(
inner_prods.shape,
(current_batch_size, _FLAG_NUM_RETRIEVALS.value))
utils.check_equal(
top_k.shape,
(current_batch_size, _FLAG_NUM_RETRIEVALS.value))
features[constants.CTH5Fields.distances].extend(inner_prods)
gathered = tf.gather(blocks, top_k).numpy()
utils.check_equal(gathered.shape[0], current_batch_size)
retrievals = []
for j in range(gathered.shape[0]):
local_gathered = gathered[j].tolist()
utils.check_equal(len(local_gathered),
_FLAG_NUM_RETRIEVALS.value)
local_gathered = [
sample.decode() for sample in local_gathered
]
token_ids = np.array(
gpt2_tokenizer.batch_encode_plus(
local_gathered,
padding="max_length",
truncation=True,
).input_ids)
for line in token_ids:
assert not np.all(line == 0), line
token_ids[token_ids == gpt2_tokenizer.eos_token_id] = -1
retrievals.append(token_ids)
features[constants.CTH5Fields.gpt2_retrieved_ids] = retrievals
utils.check_equal(
retrievals[0].shape,
(_FLAG_NUM_RETRIEVALS.value, _FLAG_CONTEXT_SIZE.value))
for k, v in features.items():
utils.check_equal(len(v), current_batch_size)
for k in range(current_batch_size):
feature = tf.train.Features(
feature={
k: _bytes_feature(
tf.io.serialize_tensor(
tf.cast(v[k], feature_dtypes[k])))
for k, v in features.items()
})
writers[split][
sample_count % _FLAG_NUM_SHARDS.value].write(
tf.train.Example(
features=feature).SerializeToString())
sample_count += 1
if sample_count % 1000 == 0:
LOGGER.debug("Paths: %s", str(all_paths[split][0]))
LOGGER.debug("Done.")
def main(argv):
if len(argv) > 1:
raise RuntimeError(argv)
absl_logging.use_python_logging()
retriever_config = tf_utils.REALMSave(
**utils.from_json_file(_FLAG_RETRIEVER_CONFIG_PATH.value))
extra = "_FROM_SUBSET" if _FLAG_USE_SUBSET.value else ""
time_stamp = time.strftime("%Y%m%d-%H%M%S")
target_path = os.path.join(_FLAG_OUTPUT_PATH.value,
time_stamp + extra).strip()
if target_path[-1] != "/":
target_path += "/"
##############################################################################
# Setup devices and strategy
##############################################################################
with utils.log_duration(LOGGER, "main", "Initializing devices"):
tpu_config = tf_utils.init_tpus()
device_type = tf_utils.current_accelerator_type()
LOGGER.debug("Devices: %s", str(tf_utils.devices_to_use()))
if device_type == "TPU":
if tpu_config is None:
raise RuntimeError("We should have a tpu_config.")
strategy = tf.distribute.TPUStrategy(tpu_config.resolver)
batch_size = len(
tf_utils.devices_to_use()) * _FLAG_BATCH_SIZE.value
elif device_type == "GPU" or device_type == "CPU":
strategy = tf.distribute.MirroredStrategy()
batch_size = len(
tf_utils.devices_to_use()) * _FLAG_BATCH_SIZE.value
else:
raise RuntimeError(device_type)
##############################################################################
# Load the dataset.
##############################################################################
eli5 = {}
keys = ["train", "eval", "test"]
gpt2_tokenizer = transformers.GPT2TokenizerFast.from_pretrained("gpt2-xl")
gpt2_tokenizer.pad_token = gpt2_tokenizer.eos_token
with utils.log_duration(LOGGER, "main", "Loading the ELI5 datasets."):
for split in tqdm.tqdm(keys):
load_path = os.path.join(_FLAGS_DATASET_ROOT.value,
"HuggingfaceDatasets",
f"{split}_kilt_eli5.hf")
with tf.device("/job:localhost"):
eli5[split] = datasets.load_from_disk(load_path)
if _FLAG_USE_SUBSET.value:
_warn_subset()
##############################################################################
#
##############################################################################
with utils.log_duration(LOGGER, "Main", "Load the textual dataset"):
# Extract the appropriate text
# The buffer_size is taken from the original ORQA code.
blocks_dataset = tf.data.TFRecordDataset(retriever_config.text_records,
buffer_size=512 * 1024 * 1024)
blocks_dataset = blocks_dataset.batch(
retriever_config.num_block_records, drop_remainder=True)
blocks = tf.data.experimental.get_single_element(blocks_dataset)
with tempfile.TemporaryDirectory() as tmp_dir:
############################################################################
# Prepare the output file.
############################################################################
tmp_dir = pathlib.Path(tmp_dir)
h5_output_path = tmp_dir / "codes.h5"
output_file = h5py.File(h5_output_path, "w")
flags_dict = {
flag.name: flag.value
for flag in flags.FLAGS.flags_by_module_dict()[argv[0]]
}
utils.to_json_file(tmp_dir / "params.json", flags_dict)
for split in keys:
with utils.log_duration(
LOGGER, "main",
"Creating the output hdf5 file, embeddings."):
num_entries = len(eli5[split]["id"])
if _FLAG_USE_SUBSET.value:
num_entries = min(num_entries, _FLAG_SUBSET_AMOUNT.value)
split_group = output_file.create_group(split)
with utils.log_duration(
LOGGER, "main",
"Creating the output hdf5 file, retrieval."):
split_group.create_dataset(
constants.CTH5Fields.distances,
shape=(num_entries, _FLAG_NUM_RETRIEVALS.value),
dtype=np.float32,
)
split_group.create_dataset(
constants.CTH5Fields.gpt2_question_ids_inputs,
shape=(num_entries, _FLAG_CONTEXT_SIZE.value),
dtype=np.int32)
if split != "test":
split_group.create_dataset(
constants.CTH5Fields.gpt2_answer_ids_inputs,
shape=(num_entries, _FLAG_CONTEXT_SIZE.value),
dtype=np.int32)
split_group.create_dataset(
constants.CTH5Fields.gpt2_retrieved_ids,
shape=(
num_entries,
_FLAG_NUM_RETRIEVALS.value,
_FLAG_MAX_LENGTH_RETRIEVALS.value,
),
dtype=np.int32)
with utils.log_duration(LOGGER, "main",
"Loading the reference db."):
checkpoint_path = os.path.join(
retriever_config.query_embedder_path, "encoded",
"encoded.ckpt")
reference_db_device = tf_utils.device_mapping().CPUs[0].name
with tf.device(reference_db_device):
reference_db = tf_utils.load_reference_db(
checkpoint_path,
variable_name="block_emb",
)
############################################################################
# Prep the encoder and the tokenizer
############################################################################
with utils.log_duration(
LOGGER, "main",
"Loading the encoder model and the tokenizer."):
with strategy.scope():
query_encoder = hub.load(retriever_config.query_embedder_path,
tags={})
encode_fn = _make_encode_fn(query_encoder)
encode_fn_strategy_run = _make_encode_fn_strategy_run_fn(
strategy=strategy,
encode_fn=encode_fn,
)
vocab_file = os.path.join(retriever_config.query_embedder_path,
"assets", "vocab.txt")
utils.check_exists(vocab_file)
do_lower_case = query_encoder.signatures["tokenization_info"](
)["do_lower_case"]
tokenization_info = dict(vocab_file=vocab_file,
do_lower_case=do_lower_case)
tokenizer, vocab_lookup_table = bert_utils.get_tf_tokenizer(
query_encoder, tokenization_info)
############################################################################
# Preprocess the dataset
############################################################################
cls_token_id = tf.cast(vocab_lookup_table.lookup(tf.constant("[CLS]")),
tf.int32)
sep_token_id = tf.cast(vocab_lookup_table.lookup(tf.constant("[SEP]")),
tf.int32)
transform = _make_transform_fn(
bert_tokenizer=tokenizer,
bert_cls_token_id=cls_token_id,
bert_sep_token_id=sep_token_id,
)
with utils.log_duration(LOGGER, "main", "generating codes"):
tqdm_splits = tqdm.tqdm(keys)
for split in tqdm_splits:
tqdm_splits.set_description(f"Split `{split}`")
eli5: Dict[str, datasets.Dataset]
write_start = 0
if _FLAG_USE_SUBSET.value:
_warn_subset(tqdm_splits)
eli5[split] = eli5[split][:_FLAG_SUBSET_AMOUNT.value]
utils.check_operator(operator.le, len(eli5[split]["id"]),
_FLAG_SUBSET_AMOUNT.value)
utils.check_operator(operator.le,
len(eli5[split]["input"]),
_FLAG_SUBSET_AMOUNT.value)
else:
utils.check_equal(len(eli5[split]), len(eli5[split]["id"]))
utils.check_equal(len(eli5[split]),
len(eli5[split]["input"]))
if split != "test":
for_slices = dict(sample_id=eli5[split]["id"],
question=eli5[split]["input"],
answer=[
sample["answer"][0]
for sample in eli5[split]["output"]
])
else:
for_slices = dict(
sample_id=eli5[split]["id"],
question=eli5[split]["input"],
)
ds = tf.data.Dataset.from_tensor_slices(for_slices)
ds = ds.map(transform,
num_parallel_calls=tf.data.experimental.AUTOTUNE)
ds = ds.apply(
tf.data.experimental.dense_to_ragged_batch(batch_size))
ds = ds.map(_squeeze,
num_parallel_calls=tf.data.experimental.AUTOTUNE)
tqdm_inner = tqdm.tqdm(enumerate(ds),
total=len(eli5[split]["id"]) //
_FLAG_BATCH_SIZE.value,
desc=f"Split `{split}`: Batches")
for i, batch in tqdm_inner:
######################################################################
# Enforce the current real batch size
######################################################################
current_batch_size = batch["sample_id"].shape[0]
for k, v in batch.items():
utils.check_equal(v.shape[0], current_batch_size)
######################################################################
gpt2_question_ids_inputs = _prep_field(
batch["question"], gpt2_tokenizer)
utils.check_equal(gpt2_question_ids_inputs.dtype, np.int32)
utils.check_equal(gpt2_question_ids_inputs.shape[0],
current_batch_size)
if split != "test":
gpt2_answer_ids_inputs = _prep_field(
batch["answer"], gpt2_tokenizer)
utils.check_equal(gpt2_answer_ids_inputs.dtype,
np.int32)
utils.check_equal(gpt2_answer_ids_inputs.shape[0],
current_batch_size)
assert len(gpt2_answer_ids_inputs.shape) == 2, (
gpt2_answer_ids_inputs.shape)
######################################################################
# Save the gpt2 tokenized question and answer
######################################################################
end = write_start + current_batch_size
utils.check_equal(
output_file[split][
constants.CTH5Fields.gpt2_question_ids_inputs]
[write_start:end].shape[0], current_batch_size)
output_file[split][
constants.CTH5Fields.gpt2_question_ids_inputs][
write_start:end] = gpt2_question_ids_inputs
if split != "test":
output_file[split][
constants.CTH5Fields.gpt2_answer_ids_inputs][
write_start:end] = gpt2_answer_ids_inputs
######################################################################
# Encode the samples.
######################################################################
batch = strategy.experimental_distribute_values_from_function(
tf_utils.make_dict_distribute_fn(batch))
embeddings = encode_fn_strategy_run(batch)
embeddings = tf_utils.process_strat_output(
embeddings, "embeddings", strategy, current_batch_size)
utils.check_isinstance(embeddings, ops.EagerTensor)
utils.check_equal(embeddings.shape[0], current_batch_size)
# pytype doesn't seem to see that we check the type
utils.check_equal(embeddings.shape[1],
_FLAG_EMBEDDING_DEPTH.value) # pytype: disable=attribute-error
######################################################################
# Retrieve.
######################################################################
with tf.device(reference_db_device):
top_k, inner_prods = tf_utils.mips_exact_search(
embeddings, _FLAG_NUM_RETRIEVALS.value,
reference_db)
top_k = tf_utils.process_strat_output(
top_k, "top_k", strategy, current_batch_size)
utils.check_equal(
inner_prods.shape,
(current_batch_size, _FLAG_NUM_RETRIEVALS.value))
utils.check_equal(
top_k.shape,
(current_batch_size, _FLAG_NUM_RETRIEVALS.value))
output_file[split]["distances"][
write_start:end] = inner_prods
gathered = tf.gather(blocks, top_k).numpy()
utils.check_equal(gathered.shape[0], current_batch_size)
utils.check_equal(write_start + gathered.shape[0], end)
for j in range(gathered.shape[0]):
local_gathered = gathered[j].tolist()
utils.check_equal(len(local_gathered),
_FLAG_NUM_RETRIEVALS.value)
local_gathered = [
sample.decode() for sample in local_gathered
]
token_ids = np.array(
gpt2_tokenizer.batch_encode_plus(
local_gathered,
padding="max_length",
truncation=True,
).input_ids)
for line in token_ids:
assert not np.all(line == 0), line
token_ids[token_ids ==
gpt2_tokenizer.eos_token_id] = -1
output_file[split][
constants.CTH5Fields.gpt2_retrieved_ids][
write_start +
j] = token_ids[:, :_FLAG_MAX_LENGTH_RETRIEVALS.
value]
write_start += current_batch_size
############################################################################
# Upload the results to GCS
############################################################################
LOGGER.debug("DONE WITH THE PRODUCTION")
output_file.close()
with utils.log_duration(LOGGER, "main", "gsutil transfer"):
command = [
"/root/google-cloud-sdk/bin/gsutil", "-m", "cp", "-r",
str(tmp_dir / "*"), target_path
]
LOGGER.debug("Command: %s", " ".join(command))
subprocess.check_call(command)
LOGGER.debug("ALL DONE")