def testGetPIDStatus(self):
"""Test that ToilStatus.getPIDStatus() behaves as expected."""
jobstoreName = 'pidStatusTest'
jobstoreLoc = os.path.join(os.getcwd(), jobstoreName)
cmd = [
'python', '-m', 'toil.test.sort.sort', 'file:' + jobstoreName,
'--clean', 'never'
]
wf = subprocess.Popen(cmd)
time.sleep(
2) # Need to let jobstore be created before checking its contents.
self.assertEqual(ToilStatus.getPIDStatus(jobstoreLoc), 'RUNNING')
wf.wait()
self.assertEqual(ToilStatus.getPIDStatus(jobstoreLoc), 'COMPLETED')
os.remove(os.path.join(jobstoreLoc, 'pid.log'))
self.assertEqual(ToilStatus.getPIDStatus(jobstoreLoc), 'QUEUED')
shutil.rmtree(jobstoreLoc)
def testGetPIDStatus(self):
"""Test that ToilStatus.getPIDStatus() behaves as expected."""
cmd = [
'python', '-m', 'toil.test.sort.sort', 'file:' + self.toilDir,
'--clean', 'never'
]
wf = subprocess.Popen(cmd)
time.sleep(
2) # Need to let jobstore be created before checking its contents.
self.assertEqual('RUNNING', ToilStatus.getPIDStatus(self.toilDir))
wf.wait()
self.assertEqual('COMPLETED', ToilStatus.getPIDStatus(self.toilDir))
os.remove(os.path.join(self.toilDir, 'pid.log'))
self.assertEqual('QUEUED', ToilStatus.getPIDStatus(self.toilDir))
for f in ['fileToSort.txt',
'sortedFile.txt']: # This toil WF does not clean these up.
if os.path.exists(f):
os.remove(f)