def __init__(self, config, in_jac_folder, in_affine_mat_folder, out_folder,
ref_img, file_list_txt):
super().__init__(config, in_jac_folder, file_list_txt)
self._ref_img = ScanWrapper(ref_img)
self._in_affine_mat_folder = DataFolder.get_data_folder_obj(
config, in_affine_mat_folder, data_list_txt=file_list_txt)
self._out_data_folder = DataFolder.get_data_folder_obj(
config, out_folder, data_list_txt=file_list_txt)
def __init__(self, config, in_dat_folder, out_folder, ref_img,
file_list_txt):
super().__init__(config, in_dat_folder, file_list_txt)
self._ref_img = ScanWrapper(ref_img)
self._out_data_folder = DataFolder.get_data_folder_obj(
config, out_folder, data_list_txt=file_list_txt)
self._jacobian_tool = config['deedsBCV_jacobian']
def __init__(self, config, in_folder, mask_img, out_png_folder, file_list_txt):
super().__init__(config, in_folder, file_list_txt)
self._mask_img = ScanWrapper(mask_img)
self._out_png_folder = DataFolder.get_data_folder_obj(config, out_png_folder, data_list_txt=file_list_txt)
self._out_png_folder.change_suffix('.png')
self._vmax = 500
self._vmin = -1000
def __init__(self, config, in_folder, out_folder, ref_img, order=3):
super().__init__(config, in_folder)
self._out_data_folder = DataFolder.get_data_folder_obj(
config, out_folder)
self._ref_img = ScanWrapper(ref_img)
self._order = order
self._reg_resample = config['niftyreg_resample']
self._reg_resmaple_ref = config['reg_resample_ref_img']
def __init__(self,
config,
in_folder,
out_folder,
average_img,
file_list_txt=None):
super().__init__(config, in_folder, file_list_txt=file_list_txt)
self._out_data_folder = DataFolder.get_data_folder_obj(
config, out_folder, data_list_txt=file_list_txt)
mkdir_p(out_folder)
self._average_img = ScanWrapper(average_img)
def __init__(self,
config,
in_scan_folder,
in_region_mask_folder,
file_list_txt,
out_average_img,
ambient=-5000):
super().__init__(config, in_scan_folder, file_list_txt)
self._in_region_mask_folder = DataFolder.get_data_folder_obj(
config, in_region_mask_folder, data_list_txt=file_list_txt)
self._out_img_path = out_average_img
self._ref_img = ScanWrapper(self._in_data_folder.get_first_path())
self._ambient = ambient
def __init__(self, config, in_folder, out_folder, file_list_txt):
super().__init__(config, in_folder, file_list_txt)
self._out_folder = DataFolder.get_data_folder_obj(
config, out_folder, data_list_txt=file_list_txt)