def do_position_loop(self):
"""Loop over all possible angular positions for this neighbour realisation."""
# Some empty datavectors
De1 = []
De2 = []
snr = []
theta= np.linspace(0,2,10)*np.pi
for i,t in enumerate(theta):
print " -- Level 2 iteration: %d (theta=%f)"%(i,t)
x = self.neighbour_distance*np.cos(t)
y = self.neighbour_distance*np.sin(t)
gal, psf = i3s.setup_simple(boxsize=32, shear=self.g, flux=self.central_flux, psf_ellipticity=self.psf_e, psf_size=self.psf_size, neighbour_ellipticity=self.neighbour_e, neighbour=[x,y], neighbour_flux=self.neighbour_flux, neighbour_size=self.neighbour_radius, wcs=self.wcs, opt=self.opt)
if self.neighbour_distance< 23:
wts = self.generate_mock_weightmap(gal.array, x, y)
else:
wts = np.ones_like(gal.array)
res, cat = i3s.run(gal, psf, weights=wts, opt=self.opt, return_cat=True, show=False)
De1.append(res.e1)
De2.append(res.e2)
snr.append(cat.snr)
# Compute the mean over all positions
return np.mean(snr), np.mean(De1), np.mean(De2)
def do_main_calculation(self, central_data, neighbour_data, sel):
self.generate_central_realisation(central_data, sel)
if self.complexity != 0:
self.generate_neighbour_realisation(neighbour_data, central_data,
sel)
# Draw this neighbour realisation repeatedly on a ring of angular position
snr, e1, e2 = self.do_position_loop()
else:
noise = self.generate_effective_noise(neighbour_data, central_data,
sel)
gal, psf = i3s.setup_simple(boxsize=32,
shear=self.g,
flux=self.central_flux,
psf_ellipticity=self.psf_e,
psf_size=self.psf_size,
neighbour=[np.inf, np.inf],
wcs=self.wcs,
opt=self.opt)
res, cat = i3s.run(gal + noise,
psf,
opt=self.opt,
return_cat=True,
show=False)
snr, e1, e2 = cat.snr, res.e1, res.e2
return snr, e1, e2
def do_main_calculation(self, central_data, neighbour_data, sel):
self.generate_central_realisation(central_data, sel)
if self.complexity!=0:
self.generate_neighbour_realisation(neighbour_data, central_data, sel)
# Draw this neighbour realisation repeatedly on a ring of angular position
snr, e1, e2 = self.do_position_loop()
else:
noise = self.generate_effective_noise(neighbour_data, central_data, sel)
gal, psf = i3s.setup_simple(boxsize=32, shear=self.g, flux=self.central_flux, psf_ellipticity=self.psf_e, psf_size=self.psf_size, neighbour=[np.inf,np.inf], wcs=self.wcs, opt=self.opt)
res, cat = i3s.run(gal+noise, psf, opt=self.opt, return_cat=True, show=False)
snr, e1, e2 = cat.snr, res.e1, res.e2
return snr, e1, e2
def do_position_loop(self):
"""Loop over all possible angular positions for this neighbour realisation."""
# Some empty datavectors
De1 = []
De2 = []
snr = []
theta = np.linspace(0, 2, 10) * np.pi
for i, t in enumerate(theta):
print " -- Level 2 iteration: %d (theta=%f)" % (i, t)
x = self.neighbour_distance * np.cos(t)
y = self.neighbour_distance * np.sin(t)
gal, psf = i3s.setup_simple(boxsize=32,
shear=self.g,
flux=self.central_flux,
psf_ellipticity=self.psf_e,
psf_size=self.psf_size,
neighbour_ellipticity=self.neighbour_e,
neighbour=[x, y],
neighbour_flux=self.neighbour_flux,
neighbour_size=self.neighbour_radius,
wcs=self.wcs,
opt=self.opt)
if self.neighbour_distance < 23:
wts = self.generate_mock_weightmap(gal.array, x, y)
else:
wts = np.ones_like(gal.array)
res, cat = i3s.run(gal,
psf,
weights=wts,
opt=self.opt,
return_cat=True,
show=False)
De1.append(res.e1)
De2.append(res.e2)
snr.append(cat.snr)
# Compute the mean over all positions
return np.mean(snr), np.mean(De1), np.mean(De2)
def run(self,
distributions,
niterations=2000,
filename="mc_toy_model-results",
size=1,
rank=0):
# Highest level loop - Sets model parameters
#-----------------------------------------------------------------------
self.m = []
self.centroid = []
print "Setting up model"
meds = s.meds_wrapper(
"/share/des/disc8/cambridge/meds/DES2111+0043-r-sim-ohioA6-meds-y1a1-beta.fits.fz"
)
shears = [-0.02, 0.02]
angles = np.linspace(0, 2 * np.pi, 31)[:-1]
self.params = {
"fc": 0,
"fn": 0,
"dgn": 0,
"Rc": 0,
"Rn": 0,
"psf_size": 0
}
self.priors = {
"fc": [200, 8000],
"fn": [2, 9000],
"dgn": [1, 70],
"Rc": [0.1, 6.0],
"Rn": [0.1, 6.0],
"psf_size": [0.1, 4.0]
}
index_c = np.random.choice(distributions.size, niterations * 50)
index_n = np.random.choice(distributions.size, niterations * 50)
idone = 0
for ireal, (icent, ineigh) in enumerate(zip(index_c, index_n)):
if ireal % size != rank:
continue
self.get_realisation(distributions, icent, ineigh, ireal)
outside_allowed = self.sanity_check()
if outside_allowed:
continue
if idone > niterations: continue
evec_g = []
restart = False
# Second level loop - input shear
#-----------------------------------------------------------------------
print "Will evaluate m using %d shear values" % len(shears)
for ishear, g in enumerate(shears):
print "g = (%2.2f, 0.00)" % g
evec_t = []
centroid = []
# Third level loop - neighbour position
#-----------------------------------------------------------------------
print "Will use %d neighbour angles" % len(angles)
for ipos, theta in enumerate(angles):
if restart: continue
x = self.params["dgn"] * np.cos(theta)
y = self.params["dgn"] * np.sin(theta)
print "theta = %2.3f degrees, position = (%3.2f,%3.2f)" % (
theta * 60., x, y)
gal, psf = i3s.setup_simple(
boxsize=96,
shear=(g, 0.0),
psf_size=self.params["psf_size"],
size=self.params["Rc"],
neighbour_ellipticity=(0.0, 0.0),
neighbour_flux=self.params["fn"],
flux=self.params["fc"],
neighbour_size=self.params["Rn"],
neighbour=[x, y],
opt=meds.options)
res = i3s.i3s([gal.array], [psf], meds=meds)
evec_t.append([res.e1, res.e2])
centroid.append(
np.sqrt(res.ra_as * res.ra_as +
res.dec_as * res.dec_as))
meane1 = np.array(evec_t).T[0].mean()
meane2 = np.array(evec_t).T[1].mean()
evec_g.append([meane1, meane2])
# Finally we have a vector, containing one mean measured shape for each of the input shear values
# Calculate m
residual_e1 = np.array(evec_g).T[0] - np.array(shears)
residual_e2 = np.array(evec_g).T[1]
m = (residual_e1[-1] - residual_e1[0]) / (shears[-1] - shears[0])
print "---------------------- m=%f" % m
print centroid
self.m.append([
(residual_e1[-1] - residual_e1[0]) / (shears[-1] - shears[0]),
(residual_e2[-1] - residual_e2[0]) / (shears[-1] - shears[0])
])
self.centroid.append(
[np.array(centroid).mean(),
np.array(centroid).max()])
if abs(self.m[-1][0]) > 2: continue
if (self.m[-1][0] < -0.01) and (np.array(centroid).mean() < 1):
import pdb
pdb.set_trace()
self.write_output_line(filename)
idone += 1
print "Done all loops"
def make_sersic(e1,e2):
gal = i3s.setup_simple(boxsize=32,shear=(e1,e2), psf_size=Rp, size=Rc_med, neighbour_ellipticity=(0.0,0.0), neighbour_flux=fn_med, flux=fc_med, neighbour_size=Rn_med, neighbour=[np.inf,0], opt=m.options)
return gal[0].array
Rn=2.9
fc=1650
fn=473
Rc_med=2.1
fc_med=945
fn_med=475
Rn_med=1.47
m=s.meds_wrapper("/share/des/disc8/cambridge/meds/DES2111+0043-r-sim-ohioA6-meds-y1a1-beta.fits.fz")
def make_sersic(e1,e2):
gal = i3s.setup_simple(boxsize=32,shear=(e1,e2), psf_size=Rp, size=Rc_med, neighbour_ellipticity=(0.0,0.0), neighbour_flux=fn_med, flux=fc_med, neighbour_size=Rn_med, neighbour=[np.inf,0], opt=m.options)
return gal[0].array
g,p=i3s.setup_simple(boxsize=32,shear=(0.05,0.2), psf_size=Rp, size=Rc_med, neighbour_ellipticity=(0.0,0.0), neighbour_flux=fn_med, flux=fc_med, neighbour_size=Rn_med, neighbour=[np.inf,0], opt=m.options)
os.system("touch /home/samuroff/hoopoe_paper/toy_model_data/simple_1parfit_e_maxsamples_g1_0.05_g2_0.2_noise8.txt")
gvec=np.linspace(-0.06,0.2,200)
for i in xrange(30000):
lvec_noisy0=[]
noise=np.random.normal(size=32*32).reshape((32,32))*8
for g1 in gvec:
im=make_sersic(g1,0.4)
chi2=((im-g.array+noise)*(im-g.array+noise) ).sum() ; lvec_noisy0.append(-0.5*chi2) ; print g1
lvec_noisy0=np.array(lvec_noisy0)
noisy_max = gvec[(lvec_noisy0==lvec_noisy0.max())]
for pe1 in pshears:
e1ofg = []
e2ofg = []
for g1 in gshears:
e1vec = []
e2vec = []
for i, theta in enumerate(angles):
x = params["dgn"] * np.cos(theta)
y = params["dgn"] * np.sin(theta)
gal, psf = i3s.setup_simple(boxsize=48,
shear=(g1, 0.0),
psf_ellipticity=(pe1, 0),
psf_size=params["Rp"],
size=params["Rc"],
neighbour_ellipticity=(0.0, 0.0),
neighbour_flux=params["fn"],
flux=params["fc"],
neighbour_size=params["Rn"],
neighbour=[x, y],
opt=m.options)
ra, transform, res, model, img = i3s.i3s([gal], [psf],
meds=m,
return_all_i3s=True)
e1vec.append(res.e1)
e2vec.append(res.e2)
e1ofg.append([np.mean(e1vec), np.std(e1vec)])
e2ofg.append([np.mean(e2vec), np.std(e2vec)])
d1 = np.array(e1ofg).T[0] - gshears
d2 = np.array(e2ofg).T[0]
m1ofp.append((d1[1] - d1[0]) / (shears[1] - shears[0]))