def main():
cfg = tools.load_config("rep_graph_mc")
db = tools.get_db(cfg["db"], 'r')
for ns in range(1, 4):
ups_key = "ups%ds" % ns
axis = cfg[ups_key]['axis']
binning = tools.axis2bins(axis)
hists_years = {}
for data_key in ["mc2011", "mc2012"]:
print data_key
db_ups = db[data_key][ups_key]
hists = [pyroot.h1_axis(axis), pyroot.h1_axis(axis), pyroot.h1_axis(axis)]
for h in hists:
h.blue() if data_key == "mc2011" else h.red()
for i, bin in enumerate(binning, start=1):
sigmas = []
for np in pdg.VALID_UPS_DECAYS[ns]:
chib_key = 'chib1%dp' % np
sigmas.append(db_ups[bin][chib_key]['sigma'])
sigma = VE(str(sigmas[0]))
hists[0][i] = sigma
for j, s in enumerate(sigmas[1:], start=1):
hists[j][i] = VE(str(s)) / sigma
hists_years[data_key] = hists
print "%s - %s" % (data_key, ups_key)
shell()
def evaluate(label):
# Run the evaluation
# Load the configuration data
config = tools.load_config(label)
t = np.linspace(0, config['sim_time'], config['time_samples'])
solution = odeint(double_pend, config['initial'], t,
args=(config['g'],
config['m1'],
config['m2'],
config['L1'],
config['L2'])
)
positions = position(solution, config['L1'], config['L2'], t)
energies = energy(solution, config['g'],
config['m1'],
config['m2'],
config['L1'],
config['L2'], t)
# Insert the time column into the solution array
sol = np.insert(solution, 0, t, axis=1)
# Store the data using the label as an indicator
np.savetxt('data/double_solutions_%s.txt' % label, sol, delimiter='\t')
np.savetxt('data/double_positions_%s.txt' % label, positions, delimiter='\t')
np.savetxt('data/double_energies_%s.txt' % label, energies, delimiter='\t')
def main():
cli_args = docopt(__doc__, version="1.0")
cfg = tools.load_config("rep_graph_fits")
cfg_profile = cfg['profiles'][cli_args['--profile']]
db = tools.get_db(cfg_profile['db'])
binning = tools.axis2bins(cfg_profile['axis'])
for plot in cfg_profile['plots']:
key = plot['key']
graphs = []
for data_key in ['2011', '2012']:
values = []
for bin in binning:
ve = pyroot.VE(str(db[data_key][bin][key]))
values.append((bin, ve))
graphs.append(graph.Graph(color=data_key, values=values))
ymin = plot.get("ymin", None)
ymax = plot.get("ymax", None)
mg = graph.MultiGraph(graphs=graphs, ymin=ymin, ymax=ymax)
mg.draw()
level = plot.get("level", None)
if level:
graphs[0].h.level(level)
filename = "%s/%s" % (cfg_profile["output_dir"], key)
tools.save_figure(filename)
shell()
def main():
cfg = tools.load_config("rep_width_data_mc")
axis = cfg["axis"]
binning = tools.axis2bins(axis)
db_mc = tools.get_db(cfg["mc"], 'r')
db_data = tools.get_db(cfg["data"], 'r')
for year in ["2011", "2012"]:
h_mc = pyroot.h1_axis(axis)
h_mc.red()
h_data = pyroot.h1_axis(axis)
h_data.blue()
db_mc_year = db_mc["mc%s" % year]["ups1s"]
db_data_year = db_data[year]
for i, bin in enumerate(binning, start=1):
h_mc[i] = VE(str(db_mc_year[bin]['chib11p']['sigma']))
h_data[i] = VE(str(db_data_year[bin]['sigma_b1_1p']))
h_ratio = h_data / h_mc
h_ratio.Draw()
h_ratio.Fit("pol0")
tools.save_figure("%s/sigma_data_mc_%s" % (cfg["output_dir"], year))
shell()
def load_config(self, filename):
"""
Load a config file:
- module config
- user config
"""
config_file = os.path.join(self.module_folder, filename)
return load_config(config_file)
def main():
cfg = tools.load_config("fig_mceff")
data = cfg["data"]
pic = FigureEff(title=cfg["title"], label=cfg["label"],
size=cfg["size"], ncols=cfg["ncols"], data=data,
scale=cfg["scale"])
print pic.texify()
def rand():
# Generate 100 random configuration files
config_main = tools.load_config()
for i in range(0, 100): # 100 limit arbitrary
config = config_main
config['initial'] = gen_initial()
with open('config/config_rand%s.json' % i, 'w') as f:
json.dump(config, f)
f.close()
def pert():
# Generate 100 slightly perturbed configurations from some base.
config_main = tools.load_config()
for i in range(0, 100): # arbitrary limit
config = config_main
config['initial'][1] = config['initial'][1]+0.035 # Perturbation
with open('config/config_pert%s.json' % i, 'w') as f:
json.dump(config, f)
f.close()
config_main = config
def main():
try:
config = load_config()
init_logger('logs/cloudsweep.log')
logger = logging.getLogger('clouddump')
service = Factory().create(
config['service']['driver'], config['service'])
service.delete_old_files()
logger.info("Program terminated successfully")
except SystemExit:
logger.info("Program terminated with errors")
def main():
cfg = tools.load_config("rep_syst_model")
for ns in range(1, 4):
cfg_decay = cfg.get("ups%ds" % ns, None)
if not cfg_decay:
continue
bins = tools.axis2bins(cfg_decay["bins"].values())
valid_bins = {}
for np in cfg_decay["bins"]:
valid_bins[int(np)] = tools.axis2bins(cfg_decay["bins"][np])
tab = table.SqsTable(
title=cfg["title"].format(ns=ns),
label=cfg["label"].format(ns=ns),
ns=ns,
binning=bins,
scale=cfg_decay["scale"],
maxbins=cfg_decay["maxbins"]
)
for np in pdg.VALID_UPS_DECAYS[ns]:
tab.add_row(key=str(np), title=r"$N_{{\chi_b(%dP)}}$" % np)
if np != pdg.VALID_UPS_DECAYS[ns][-1]:
tab.space()
db_ref = tools.get_db(cfg_decay["db_ref"])
dbs = []
for db_name in cfg_decay["nchib"]:
dbs.append(tools.get_db(db_name, "r"))
for bin in bins:
for year in ["2011", "2012"]:
bin_group = tab.get_group(bin, year)
for np in pdg.VALID_UPS_DECAYS[ns]:
if bin in valid_bins[np]:
change = dbtools.get_chib_squared_error(
db_ref, dbs, np, year, bin
)
if change is None:
value = None
else:
stat = dbtools.get_chib_yield_err(
db_ref, np, year, bin
)
value = (
r"${\pm %.1f \%% \stat}^{+%.1f \%%}_{-%.1f \%%} \syst$" %
(stat * 100, change[0] * 100, change[1] * 100)
)
else:
value = None
bin_group.add_value(key=str(np), value=value)
print tab.texify()
def main():
canvas = ROOT.TCanvas("c_ups", "c_ups", 800, 600)
cfg = tools.load_config("mc")
cfg_tuples = tools.load_config("tuples")
utree = ROOT.TChain("UpsilonAlg/Upsilon")
utree.Add(cfg_tuples["mc2011"][0])
cut = cfg["decays"]["ups1s"]["ucut"]
cut["pt_ups"] = [18, 22]
cut_str = tools.cut_dict2str(cut)
h = ROOT.TH1D("h_ups", "h_ups", 100, 9.2, 9.7)
utree.Draw("m_dtf>>%s" % h.GetName(), cut_str)
model = UpsMCModel(
canvas=canvas,
data=h,
binning=[100, 9.2, 9.7],
)
model.fitData()
print(model)
tools.save_figure("mc/ups1s/ups2011_dcb")
def copy_models(dest_foldername, df):
check_if_folder_exists(dest_foldername)
models_folder = join(TRAINING_DATA_PATH, 'models')
for i in range(len(df)):
entry = df.loc[i]
model_id = entry['model_name']
source_path = join(models_folder, model_id)
config = tools.load_config(join(source_path, 'model.pt'))
dataset = config['source_dataset'].lower()
embedding = config['embedding']
destination = join(dest_foldername,
f'{dataset}_{embedding}_{model_id}')
shutil.copytree(source_path, destination)
def main():
tools.error_led.off()
config = tools.load_config(CONFIG_FILE)
if args.debug:
print(config)
device_info = {
"device_id": config["device_id"],
"passkey_hash": config["passkey_hash"],
"latitude": config["latitude"],
"longitude": config["longitude"]
}
# Check if device is registered
send_data = tools.send_data_to_server(REGISTER_DEVICE_URL, device_info)
if args.debug:
print(send_data)
# Remove positional variables as they are no longer needed
device_info.pop("latitude")
device_info.pop("longitude")
# Import sensor objects
sensorList = tools.import_sensors(config)
nextTime = int(get_new_time())
if args.debug:
print(int(time.time()), nextTime)
while True:
while time.time() < nextTime:
continue
# Read and format sensor data
data = read_from_all(sensorList)
dataToSend = (device_info)
dataToSend.update({'time': nextTime})
dataToSend.update(tools.format_dict(data))
# Send data to server
print(dataToSend)
send_data = tools.send_data_to_server(ADD_DATA_URL, dataToSend)
if args.debug:
print(send_data)
# Calculate next time to retrieve information
nextTime = int(get_new_time())
if args.debug:
print(int(time.time()), nextTime)
def __init__(self, title, label, ns, binning, scale=1, resizebox=None,
maxbins=None,
is_cmidrule=True):
super(PtTable, self).__init__(title=title, label=label, scale=scale,
resizebox=resizebox)
cfg = tools.load_config("pttable")
self.ns = ns
self.binning = binning
self.maxbins = maxbins
title = cfg["title"].format(ns=ns) if ns else cfg["titlemumu"]
self.ups = self.add_subgroup(key="ups", title=title)
for bin in binning:
self.ups.add_subgroup(key=tuple(bin),
title=cfg['range'].format(bin[0], bin[1]),
is_cmidrule=is_cmidrule)
def main():
# log = Logger()
cli_args = get_cli_args()
if cli_args.complete:
complete()
exit(0)
cfg = tools.load_config("fits")[cli_args.profile]
if cli_args.year == 'all':
years = ['2011', '2012']
elif cli_args.year == "full":
years = ['all']
else:
years = [cli_args.year]
print "Years: "+str(years)
args = []
sleep = 0
if "lambda" in cfg["profiles"]:
cfg["profiles"].remove("lambda")
cfg["profiles"] += ["lambda%d" % i for i in range(0, 11)]
print "Profiles: "+str(cfg["profiles"] )
for profile in cfg["profiles"]:
for year in years:
for bin in tools.get_binning_per_year(cfg, year):
print str(bin), ", ",
args += ["--tab-with-profile", "Tomorrow"]
args += ["--title",
"{0}-{1} {2} {3}".format(
bin[0], bin[1], year, profile
)]
args += ["-e", "./fit.sh" +
" {0} {1} {2} {3} {4} {5}".format(sleep, cfg["decay"],
year, bin[
0], bin[1],
profile
)
]
sleep += 2
print "---"
gnome_terminal(args)
def loss_landscape(eval_model_filepath, tokenizer_filepath,
result_filepath, model_num, examples_dirpath, is_training):
'''LOAD MODELS, EMBEDDING, AND TOKENIZER'''
config = tools.load_config(eval_model_filepath)
if config['embedding'] == 'MobileBERT':
tools.USE_AMP = False
clean_models_filepath = tools.get_clean_model_filepaths(config)
clean_testing_model_filepath = tools.get_clean_model_filepaths(config, for_testing=True)
models = tools.load_all_models(eval_model_filepath, clean_models_filepath, clean_testing_model_filepath)
embedding_matrix = tools.get_embedding_matrix(models['eval_model'])
clean_embedding_matrix = tools.get_average_clean_embedding_matrix(models['clean_models'])
embedding_matrices = [embedding_matrix, clean_embedding_matrix]
tools.TOKENIZER = tools.load_tokenizer(tokenizer_filepath, config)
tools.MAX_INPUT_LENGTH = tools.get_max_input_length(config)
class_list = tools.get_class_list(examples_dirpath)
source_class = 1
target_class = 7
clean_class_list = [source_class, target_class]
# trigger_token_ids = \
# tools.make_initial_trigger_tokens(is_random=False, initial_trigger_words="ok")
trigger_token_ids = torch.tensor([0]).to(tools.DEVICE)
trigger_length = len(trigger_token_ids)
tools.update_logits_masks(class_list, clean_class_list, models['eval_model'])
temp_examples_dirpath = join('/'.join(clean_models_filepath[0].split('/')[:-1]), 'clean_example_data')
vars, trigger_mask, source_class_token_locations =\
playground.initialize_attack_for_source_class(temp_examples_dirpath, source_class, trigger_token_ids)
best_k_ids = torch.tensor([list(tools.TOKENIZER.vocab.values())]).to(tools.DEVICE)
loss_per_candidate = \
playground.get_loss_per_candidate(models, vars, source_class_token_locations,
trigger_mask, trigger_token_ids, best_k_ids, len(trigger_token_ids)-1,
source_class, target_class, clean_class_list, class_list, is_testing=True)
np.save(f'/scratch/utrerf/TrojAI/NLP/round7/loss_landscape_model_{model_num}/candidates',\
np.array([i[0].detach().cpu().numpy() for i in loss_per_candidate]))
np.save(f'/scratch/utrerf/TrojAI/NLP/round7/loss_landscape_model_{model_num}/losses',\
np.array([i[1] for i in loss_per_candidate]))
np.save(f'/scratch/utrerf/TrojAI/NLP/round7/loss_landscape_model_{model_num}/embeddings',\
np.array([i[2] for i in loss_per_candidate]))
def main():
'''
Makes the database dump, compress it
and uploads it to the chosen service
'''
try:
init_logger('logs/clouddump.log')
logger = logging.getLogger('clouddump')
config = load_config()
service = Factory().create(
config['service']['driver'], config['service'])
date_time = strftime("%Y%m%d%H%M%S", gmtime())
file_name = TMP_DIR + date_time + '_' + config['database']['name']
database = Factory().create(
config['database']['driver'], config['database'])
dumped_file = database.dump(config['database']['name'], file_name)
service.upload(dumped_file)
os.remove(dumped_file)
logger.info("%s removed from local system" % dumped_file)
logger.info("Program terminated successfully")
except SystemExit:
logger.info("Program terminated with errors")
def main():
cfg_rep = tools.load_config("rep_mceff")
db = tools.get_db(cfg_rep["db"], "r")
for ns in range(1, 4):
graph_values = {
"mc2011": defaultdict(list),
"mc2012": defaultdict(list),
}
for np in pdg.VALID_UPS_DECAYS[ns]:
title = cfg_rep["title"].format(
ns=ns,
np=np
)
label = cfg_rep["label"].format(
ns=ns,
np=np
)
ups_key = "ups%ds" % ns
axis = cfg_rep["axis"]["ups%ds" % ns]
bins = tools.axis2bins(axis)
maxbins = cfg_rep["maxbins"]
tab = create_table(label=label, title=title,
scale=cfg_rep["scale"],
cfg_rows=cfg_rep["rows"],
ns=ns, np=np, binning=bins, maxbins=maxbins)
for bin in bins:
for data_key in ["mc2011", "mc2012"]:
mc = mctools.MC(db=db[data_key][ups_key], ns=ns, np=np)
bin_group = tab.get_bin(bin)
data_group = bin_group.add_subgroup(
key=data_key,
title=cfg_rep["data_titles"][data_key]
)
for nb in range(1, 3):
nchib, nups, eff = (
mc.nchib(bin, nb),
mc.nups(bin, nb),
mc.eff(bin, nb))
assert(nchib.value() != 0)
assert(nups.value() != 0)
assert(eff.value() != 0)
data_group.add_value("n%d" % nb, nchib)
data_group.add_value("nups%d" % nb, nups)
data_group.add_value("eff%d" % nb,
eff * 100,
is_bold=True)
eff = mc.eff(bin) * 100
data_group.add_value("eff", eff, is_bold=True)
graph_values[data_key][np].append((bin, eff))
print tab.texify()
for np in pdg.VALID_UPS_DECAYS[ns]:
graphs = []
for data_key in ["mc2011", "mc2012"]:
g = graph.Graph(color=data_key,
values=graph_values[data_key][np], space=3)
graphs.append(g)
mg = graph.MultiGraph(graphs=graphs, ymin=0)
mg.draw()
output = "mc/eff/ups%d_%d" % (ns, np)
tools.save_figure(output)
def main():
cli_args = docopt(__doc__, version='v1.0')
def fit(niters=1):
for iter in range(niters):
model.fitData()
print(model)
if cfg['save?']:
save(cfg['name'], model, cli_args["--year"],
(int(cli_args["--ptbegin"]), int(cli_args["--ptend"])))
if model.status:
log.info("OK")
break
else:
log.err("BAD")
log = Logger()
# cli_args = get_cli_args()
if cli_args["--complete"]:
complete()
exit(0)
tuples_cfg = tools.load_config("tuples")
if cli_args["--year"] != "all":
tuples = [tuples_cfg[cli_args["--year"]]]
else: # all
tuples = [tuples_cfg[year] for year in ['2011', '2012']]
log.info("Tuples: " + str(tuples))
cfg = tools.load_config(cli_args["--decay"])
cfg.update(cfg['profiles'].get(cli_args["--profile"], {}))
del cfg["profiles"]
tree = ROOT.TChain(cfg["tree"])
for file_name in tuples:
tree.Add(file_name)
fitter = get_fitter(cli_args["--decay"])
canvas = ROOT.TCanvas("c_fit",
"{year} {start}-{end} {name}".format(
year=cli_args["--year"],
start=cli_args["--ptbegin"],
end=cli_args["--ptend"],
name=cfg["name"])
)
cut = cfg['cut']
cut["pt_ups"] = (int(cli_args["--ptbegin"]), int(cli_args["--ptend"]))
log.info("Cut: %s" % tools.cut_dict2str(cfg['cut']))
# is_unbinned = (
# True if cfg["unbinned?"] and int(
# cli_args["--ptbegin"]) >= 10 else False
# )
is_unbinned = cfg["unbinned?"]
if is_unbinned:
data = source.dataset(tree=tree,
cut=cut,
field=cfg['field'],
has_splot=cfg['splot?'])
else:
data = source.histogram(tree=tree,
cut=cut,
field=cfg['field'],
nbins=cfg['nbins'])
# mc = None
log.info("Profile:" + pprint.pformat(cfg, indent=2))
model = fitter.prepare_model(
canvas=canvas,
data=data,
year=cli_args['--year'],
interval=cfg['cut'][cfg['field']],
nbins=cfg['nbins'],
name=cfg['name'],
has_splot=cfg['splot?'],
profile=cfg,
pt_ups=cut["pt_ups"]
)
fit()
if not model.status:
fit()
if cli_args["--interactive"] or not model.status:
shell()
def main():
cli_args = docopt(__doc__, version='v1.0')
canvas = ROOT.TCanvas("c_yields", "c_yields", 800, 600)
cfg = tools.load_config("rep_yields")
report_key = cli_args["--profile"]
report_cfg = cfg[report_key]
db = tools.get_db(report_cfg["db"])
output_dir = report_cfg["output_dir"]
plots_cfg = report_cfg["plots"]
for plot_cfg in plots_cfg:
yield_key = plot_cfg["key"]
bins = tools.axis2bins(plot_cfg["axis"])
graphs = []
graphs_scaledbybin = []
graphs_scaledbylum = []
for data_key in ["2011", "2012"]:
values = []
values_scaledbybinsize = []
values_scaledbylum = []
for bin in bins:
if bin in db[data_key]:
value = VE(str(db[data_key][bin][yield_key]))
values.append((bin, value))
value_bin = value / (bin[1] - bin[0])
values_scaledbybinsize.append((bin, value_bin))
scale = 1 if data_key == "2011" else 2
values_scaledbylum.append((bin, value_bin / scale))
else:
values.append((bin, None))
values_scaledbybinsize.append((bin, None))
values_scaledbylum.append((bin, None))
graphs.append(
graph.Graph(color=data_key, values=values)
)
graphs_scaledbybin.append(
graph.Graph(color=data_key,
values=values_scaledbybinsize)
)
graphs_scaledbylum.append(
graph.Graph(color=data_key, values=values_scaledbylum)
)
ymin = plot_cfg["ymin"]
ymax = plot_cfg["ymax"]
if plot_cfg.get("logscale?", False):
canvas.SetLogy(True)
else:
canvas.SetLogy(False)
mg = graph.MultiGraph(graphs=graphs, ymin=ymin[0], ymax=ymax[0])
mg.draw()
tools.save_figure("%s/%s" % (output_dir, yield_key))
mg = graph.MultiGraph(graphs=graphs_scaledbybin, ymin=ymin[1],
ymax=ymax[1])
mg.draw()
tools.save_figure("%s/%s_scaledbybin" % (output_dir, yield_key))
mg = graph.MultiGraph(graphs=graphs_scaledbylum, ymin=ymin[2],
ymax=ymax[2])
mg.draw()
tools.save_figure("%s/%s_scaledbylum" % (output_dir, yield_key))
canvas.SetLogy(False)
def main():
# cli_args = docopt(__doc__, version='v1.0')
cfg = tools.load_config("rep_mcfits")
keys_cfg = cfg["keys"]
db = tools.get_db(cfg["db"])
fmt = {}
for ns in range(1, 4):
fmt["ns"] = ns
bins = tools.axis2bins(cfg["binning"]["ups%ds" % ns])
for np in pdg.VALID_UPS_DECAYS[ns]:
fmt["np"] = np
title = cfg["title"].format(**fmt)
label = cfg["label"].format(**fmt)
tab = table.SqsTable(
title=title,
label=label,
ns=ns,
binning=bins,
scale=cfg["scale"],
maxbins=cfg["maxbins"]
)
for row in cfg["rows"]:
if row is None:
tab.space()
continue
fmt["nb"] = row["nb"]
chib = cfg["chib"].format(**fmt)
tab.add_row(
key=row["key"],
title=get_title(cfg["keys"][row["map"]]).format(chib=chib)
)
for bin in bins:
for data_key in ["mc2011", "mc2012"]:
# Add rows
group = tab.get_group(bin=bin, sqs=data_key)
for nb in range(1, 3):
ups_key = "ups%ds" % ns
for row in cfg["rows"]:
if not row:
continue
chib_key = "chib%d%dp" % (row['nb'], np)
db_fit = db[data_key][ups_key][
tuple(bin)][chib_key]
value = db_fit.get(row['map'], None)
scale = get_scale(cfg["keys"][row['map']])
rounds = get_round(cfg["keys"][row['map']])
if value and scale:
value = VE(str(value)) * scale
group.add_value(
key=row['key'],
value=value,
round=rounds
)
print tab.texify()
def main():
label = input('Enter config file label (e.g. core): ')
config = tools.load_config(label)
solutions = np.loadtxt('data/double_solutions_%s.txt' % label)
displacements(solutions, label, config)
frequencies(solutions, label, config)
from co2 import get_co2
from humidity import get_humidity
def get_ip_and_token(tool, config):
return config[tool]['ip'], config[tool]['token']
def run_command(params, command):
cmd = f"""miplug --ip {params[0]} --token {params[1]} {command}"""
print(cmd)
subprocess.run(cmd.split(' '))
PROJECT_PATH = os.path.abspath(os.getcwd())
#PROJECT_PATH = '/users/test/Documents/proj_smart_home'
CONFIG_PATH = 'configs'
config = load_config(os.path.join(PROJECT_PATH, CONFIG_PATH, 'tokens.yaml'))
for i in config.keys():
globals()[i] = get_ip_and_token(i, config)
#print(floor_lamp, humidifier, recirculator, chandelier_1, chandelier_2)
co2 = get_co2()
print(co2)
h, t = get_humidity()
print("Temp={0:0.1f}*C Humidity={1:0.1f}%".format(t, h))
print(t, h)
# run_command(humidifier, 'on')
# time.sleep(7)
# run_command(humidifier, 'off')
# -*- coding: utf-8 -*-
import time
from tools import load_config
import ximalaya
import music163
if __name__ == "__main__":
albumlist = load_config('config.json')
log = open("error.log", "a")
for album in albumlist:
try:
if album['platform'] == 'ximalaya':
podcast = ximalaya.Ximalaya(int(album['albumid']))
if album['platform'] == 'music163':
podcast = music163.Music163(int(album['albumid']))
podcast.get_podcast()
except Exception as e:
print('异常:', e)
curr_time = time.strftime("%Y-%m-%d %H:%M:%S", time.localtime())
log.write("{}：爬取{}的{}失败：{}\n".format(curr_time, album['platform'],
album['albumid'], str(e)))
print("肉が全部焼きました どうぞ")
def main():
cfg = tools.load_config("rep_final")
db_ups = tools.get_db(cfg["db_ups"], "r")
db_mc = tools.get_db(cfg["db_mc"], "r")
db_pol = tools.get_db(cfg["db_pol"], "r")["mcall"]
db_out = tools.get_db(cfg["db_out"])
fmt_syst = r"${}^{+%.2f \%%}_{-%.2f \%%}$"
fmt_syst_final = (r"%s\stat${}^{+%.1f}_{-%.1f}\syst"
"^{+%.1f}_{-%.1f}\systpol \%%$")
fmt_pm_ups = r"$\pm %.3f \%%$"
fmt_pm_eff = r"$\pm %.2f \%%$"
tabs_final = []
graph_values = {}
max_syst_ns = {}
for ns in range(2, 3):
cfg_decay = cfg.get("ups%ds" % ns, None)
if not cfg_decay:
continue
bins = tools.axis2bins(cfg_decay["bins"].values())
valid_bins = {}
for np in cfg_decay["bins"]:
valid_bins[int(np)] = tools.axis2bins(cfg_decay["bins"][np])
graph_values[ns] = {}
tabs = []
TabFabric = partial(
table.SqsTable,
ns=ns,
binning=bins,
scale=cfg["scale"],
maxbins=cfg["maxbins"]
)
tab_model = TabFabric(
title=cfg["title_model"].format(ns=ns),
label=cfg["label_model"].format(ns=ns),
)
tab_ups = TabFabric(
title=cfg["title_ups"].format(ns=ns),
label=cfg["label_ups"].format(ns=ns),
)
tab_eff = TabFabric(
title=cfg["title_eff"].format(ns=ns),
label=cfg["label_eff"].format(ns=ns),
)
tab_pol = TabFabric(
title=cfg["title_pol"].format(ns=ns),
label=cfg["label_pol"].format(ns=ns),
)
tab_final = TabFabric(
title=cfg["title_final"].format(ns=ns),
label=cfg["label_final"].format(ns=ns),
)
tab_final.maxbins = cfg["maxbins_final"]
tab_final.scale = cfg["scale_final"]
tabs.append(tab_model)
tabs.append(tab_ups)
tabs.append(tab_eff)
tabs.append(tab_pol)
tabs_final.append(tab_final)
# TODO: add other tables
for np in pdg.VALID_UPS_DECAYS[ns]:
for tab in tabs + [tab_final]:
tab.add_row(key=str(np),
title=cfg["row_title"].format(ns=ns, np=np))
if np != pdg.VALID_UPS_DECAYS[ns][-1]:
tab.space()
db_ref = tools.get_db(cfg_decay["db_ref"])
dbs = []
for db_name in cfg_decay["nchib"]:
db = tools.get_db(db_name, "r")
# print db_name
# print sorted(db['2011'].keys())
# print sorted(db['2012'].keys())
dbs.append(db)
max_syst_np = {}
for bin in bins:
graph_values[ns][bin] = {}
for year in ["2011", "2012"]:
graph_values[ns][bin][year] = {}
bin_group_model = tab_model.get_group(bin, year)
bin_group_ups = tab_ups.get_group(bin, year)
bin_group_eff = tab_eff.get_group(bin, year)
bin_group_pol = tab_pol.get_group(bin, year)
bin_group_final = tab_final.get_group(bin, year)
for np in pdg.VALID_UPS_DECAYS[ns]:
graph_values[ns][bin][year][np] = {}
if bin in valid_bins[np]:
max_model, min_model, max_pol, min_pol = (
max_syst_np.get(np, (0, 0, 0, 0))
)
change = dbtools.get_chib_squared_error(
db_ref, dbs, np, year, bin
)
frac_func = partial(dbtools.get_fraction,
db_chib=db_ref,
db_ups=db_ups,
db_mc=db_mc,
year=year,
bin=bin,
ns=ns,
np=np)
frac = frac_func()
value = frac * 100
# frac_plus = frac_func(scalecb=(1 + change[0]))
# frac_minus = frac_func(scalecb=(1 - change[1]))
# assert frac and frac_plus and frac_minus, "!!!"
# syst_model = (
# 100 * (frac_plus.value() - frac.value()),
# 100 * (frac.value() - frac_minus.value())
# )
syst_model = (
change[0],
change[1]
)
# change_model = (
# 100 * (frac_plus / frac - 1).value(),
# 100 * (1 - frac_minus / frac).value(),
# )
max_model, min_model = (
max(max_model, change[0]),
max(min_model, change[1])
)
ups_syst = cfg["ups_syst"]
# frac_plus = frac_func(scaleups=(1 - ups_syst))
# frac_minus = frac_func(scaleups=(1 + ups_syst))
syst_ups = (
ups_syst,
ups_syst
)
# change_ups = (
# 100 * (frac_plus / frac - 1).value(),
# 100 * (1 - frac_minus / frac).value(),
# )
eff_syst = cfg["eff_syst"]
# frac_plus = frac_func(scaleeff=(1 - eff_syst))
# frac_minus = frac_func(scaleeff=(1 + eff_syst))
syst_eff = (
eff_syst,
eff_syst
)
# change_eff = (
# 100 * (frac_plus / frac - 1).value(),
# 100 * (1 - frac_minus / frac).value(),
# )
change = dbtools.get_polarization_change(
db_pol, ns, np, bin
)
# frac_plus = frac_func(scaleeff=(1 - change[1]))
# frac_minus = frac_func(scaleeff=(1 + change[0]))
syst_pol = (
change[1],
change[0]
)
# change_pol = (
# 100 * (frac_plus / frac - 1).value(),
# 100 * (1 - frac_minus / frac).value(),
# )
max_pol, min_pol = (
max(max_pol, change[1]),
max(min_pol, change[0])
)
max_syst_np[np] = (
max_model, min_model, max_pol, min_pol)
final_syst = []
for i in range(2):
final_syst.append(
math.sqrt(
syst_model[i] ** 2 +
syst_ups[i] ** 2 +
syst_eff[i] ** 2
)
)
final_graph = []
for i in range(2):
final_graph.append(
math.sqrt(
(value.value() * final_syst[i]) ** 2 +
(value.value() * syst_pol[i]) ** 2 +
value.error() ** 2
)
)
graph_values[ns][bin][year][np] = (
value, final_graph[0], final_graph[1]
)
# if ns == 3:
# shell()
# exit(1)
else:
value = None
if value:
# TODO: collect square roots
# bin_group_model.add_value(
# key=str(np),
# value=fmt_syst % change_model)
# bin_group_ups.add_value(
# key=str(np),
# value=fmt_pm_ups % change_ups[0])
# bin_group_eff.add_value(
# key=str(np),
# value=fmt_pm_eff % change_eff[0])
# bin_group_pol.add_value(
# key=str(np),
# value=fmt_syst % syst_pol)
final_value = (fmt_syst_final %
(tools.latex_ve(value),
value * final_syst[0],
value * final_syst[1],
value * syst_pol[0],
value * syst_pol[1]
))
bin_group_final.add_value(
key=str(np),
value=final_value)
else:
bin_group_model.add_value(key=str(np), value=None)
bin_group_ups.add_value(key=str(np), value=None)
bin_group_eff.add_value(key=str(np), value=None)
bin_group_pol.add_value(key=str(np), value=None)
bin_group_final.add_value(key=str(np), value=None)
max_syst_ns[ns] = max_syst_np
# for tab in tabs:
# if tab not in [tab_ups, tab_eff, tab_]
# print tab.texify()
print "%% Final tables ============ "
for tab in tabs_final:
print tab.texify()
print_summary(max_syst_ns, cfg["decay_tmpl"])
draw_graphs(cfg, graph_values)
save_values(cfg, db_out, graph_values)
def trojan_detector(eval_model_filepath, tokenizer_filepath, result_filepath,
scratch_dirpath, examples_dirpath, is_training):
''' 1. LOAD MODELS, EMBEDDINGS AND TOKENIZER'''
config = tools.load_config(eval_model_filepath)
if config['embedding'] == 'MobileBERT':
tools.USE_AMP = False
clean_models_filepath = tools.get_clean_model_filepaths(config)
clean_testing_model_filepath = tools.get_clean_model_filepaths(
config, for_testing=True)
models = tools.load_all_models(eval_model_filepath, clean_models_filepath,
clean_testing_model_filepath)
embedding_matrix = tools.get_embedding_matrix(models['eval_model'])
clean_embedding_matrix = tools.get_average_clean_embedding_matrix(
models['clean_models'])
embedding_matrices = [embedding_matrix, clean_embedding_matrix]
tools.TOKENIZER = tools.load_tokenizer(tokenizer_filepath, config)
tools.MAX_INPUT_LENGTH = tools.get_max_input_length(config)
''' 2. INITIALIZE ATTACK FOR A SOURCE CLASS AND TRIGGER LENGTH '''
# initial_trigger_token_ids = tools.make_initial_trigger_tokens(is_random=False, initial_trigger_words="ok "*7)
initial_trigger_token_ids = torch.tensor([0, 0, 0, 0, 0]).to(tools.DEVICE)
# initial_trigger_token_ids = torch.tensor([11920]).to(tools.DEVICE)
trigger_length = len(initial_trigger_token_ids)
''' 3. ITERATIVELY ATTACK THE MODEL CONSIDERING NUM CANDIDATES PER TOKEN '''
df = pd.DataFrame(columns=[
'source_class', 'target_class', 'top_candidate',
'decoded_top_candidate', 'trigger_asr', 'clean_asr', 'loss',
'testing_loss', 'clean_accuracy', 'decoded_initial_candidate'
])
class_list = tools.get_class_list(examples_dirpath)
# TODO: Remove this
# class_list = [7, 1]
TRIGGER_ASR_THRESHOLD, TRIGGER_LOSS_THRESHOLD = 0.95, 0.001
for source_class, target_class in tqdm(
list(itertools.product(class_list, class_list))):
if source_class == target_class:
continue
temp_class_list = tools.get_class_list(examples_dirpath)
temp_class_list_clean = [source_class, target_class]
tools.update_logits_masks(temp_class_list, temp_class_list_clean,
models['eval_model'])
# TODO: Clean this and make it more elegant
temp_examples_dirpath = join(
'/'.join(clean_models_filepath[0].split('/')[:-1]),
'clean_example_data')
# temp_examples_dirpath = examples_dirpath
update_clean_logits(models['clean_models'],
temp_examples_dirpath,
source_class,
initial_trigger_token_ids=torch.tensor([]))
vars, trigger_mask, masked_source_class_token_locations =\
initialize_attack_for_source_class(temp_examples_dirpath, source_class, initial_trigger_token_ids)
trigger_token_ids, loss, initial_eval_logits, _ = \
get_trigger(models, vars, masked_source_class_token_locations, temp_class_list_clean, temp_class_list,
source_class, target_class, initial_trigger_token_ids, trigger_mask, trigger_length, embedding_matrices)
''' Evaluate the trigger and save results to df'''
trigger_asr = tools.get_trigger_asr(
masked_source_class_token_locations, initial_eval_logits,
target_class)
update_clean_logits(models['clean_testing_models'],
temp_examples_dirpath,
source_class,
initial_trigger_token_ids=torch.tensor([]))
vars, trigger_mask, masked_source_class_token_locations =\
initialize_attack_for_source_class(temp_examples_dirpath, source_class, initial_trigger_token_ids)
clean_asr_list, clean_accuracy_list, testing_loss = \
tools.get_clean_asr_and_accuracy(vars, trigger_mask, trigger_token_ids, temp_examples_dirpath,
initial_trigger_token_ids, models, source_class, target_class,
temp_class_list_clean, temp_class_list, masked_source_class_token_locations)
decoded_top_candidate = tools.decode_tensor_of_token_ids(
trigger_token_ids)
decoded_initial_candidate = tools.decode_tensor_of_token_ids(
initial_trigger_token_ids)
df.loc[len(df)] = [source_class, target_class, trigger_token_ids.detach().cpu().numpy(), \
decoded_top_candidate, trigger_asr, np.array(clean_asr_list).mean(), \
loss[0].detach().cpu().numpy(), testing_loss[0].detach().cpu().numpy(), \
np.array(clean_accuracy_list).mean(), decoded_initial_candidate]
if trigger_asr > TRIGGER_ASR_THRESHOLD and testing_loss[
0] < TRIGGER_LOSS_THRESHOLD:
break
parent_dir = '/scratch/utrerf/TrojAI/NLP/round7/results/'
subdir = f'lambda_{tools.LAMBDA}_num_candidates_{tools.NUM_CANDIDATES}_'+\
f'beam_size_{tools.BEAM_SIZE}_trigger_length_{trigger_length}/'
tools.check_if_folder_exists(parent_dir)
tools.check_if_folder_exists(join(parent_dir, subdir))
filename = f'{args.model_num}.csv'
if is_training:
df.to_csv(join(parent_dir, subdir, filename))
else:
df = df.sort_values('testing_loss').reset_index(drop=True)
X = df.loc[0, ['testing_loss', 'clean_asr', 'trigger_asr']]
clf = load('NLP/round7/classifier.joblib')
pred = clf.predict_proba(X.to_numpy().reshape(1, -1))
with open(result_filepath, 'w') as f:
f.write("{}".format(pred))
def main():
cli_args = docopt(__doc__, version="1.0")
cfg = tools.load_config("rep_syst")
for ns in range(2, 3):
cfg_decay = cfg["ups%ds" % ns]
db_ref = tools.get_db(cfg_decay["db"])
bins = tools.axis2bins(cfg_decay["axis"].values())
valid_bins = {}
for np in cfg_decay["axis"]:
valid_bins[int(np)] = tools.axis2bins(cfg_decay["axis"][np])
# Check presence
# ====================================================================
check_dbs = []
for cfg_row in cfg_decay["tables"]:
for row in cfg_row["rows"]:
check_dbs.append(row["db"])
check_bins = set()
for np in cfg_decay["axis"]:
check_bins.update(tools.axis2bins(cfg_decay["axis"][np]))
ok = True
for data_key in ["2011", "2012"]:
for dbpath in check_dbs:
db = tools.get_db(dbpath, "r")
for bin in sorted(check_bins):
db_year = db[data_key]
if bin not in db_year:
ok = False
print("DB %s: No bin %s for Y(%dS) decays in %s" % (
dbpath, str(bin), ns, data_key)
)
db.close()
if not ok:
continue
# ====================================================================
for cfg_table in cfg_decay["tables"]:
scale = (cfg_table['scale'] if "scale" in cfg_table
else cfg_decay['scale'])
tab = table.SystTable(
title=cfg_table["title"],
label=cfg_table["label"],
binning=bins,
ns=ns,
nchib=pdg.VALID_UPS_DECAYS[ns],
maxbins=cfg_decay["maxbins"],
scale=scale
)
for cfg_row in cfg_table['rows']:
tab.add_row(key=cfg_row["key"], title=cfg_row["title"])
if cfg_row.get("space", False):
tab.space()
db = tools.get_db(cfg_row["db"], "r")
for bin in bins:
for data_key in ["2011", "2012"]:
db_bin = db[data_key][bin]
db_bin_ref = db_ref[data_key][bin]
sqs = 7 if data_key == "2011" else 8
for np in pdg.VALID_UPS_DECAYS[ns]:
np_key = "N%dP" % np
value = db_bin.get(np_key, None)
value_ref = db_bin_ref.get(np_key, None)
if not (bin in valid_bins[np] and value and value_ref):
value_change = None
else:
value_change = (
1 - VE(str(value)) / VE(str(value_ref))
) * 100
value_change = value_change.value()
group = tab.get_group(bin=bin, sqs=sqs, np=np)
group.add_value(
key=cfg_row["key"], value=value_change, round=1)
# Fill Table
print(tab.texify())
def main():
cli_args = docopt(__doc__, version='v1.0')
cfg = tools.load_config("rep_frac")
profiles = []
if cli_args["--profile"]:
profiles.append(cli_args["--profile"])
else:
for profile in cfg:
profiles.append(profile)
for profile_name in sorted(profiles):
profile_cfg = cfg[profile_name]
ns = profile_cfg["ns"]
db = tools.get_db(profile_cfg["db"], "r")
db_y = tools.get_db(profile_cfg["db_y"], "r")
db_mc = tools.get_db(profile_cfg["mc"], "r")
bins, year_bins = get_axises(profile_cfg["axises"])
tab = table.SqsTable(
title=profile_cfg["title"],
label=profile_cfg["label"],
ns=ns,
binning=bins,
scale=profile_cfg["scale"],
maxbins=profile_cfg["maxbins"]
)
for np in profile_cfg["nps"]:
tab.add_row(
key=str(np),
title=r"$N_{\chi_b(%dP)}$" % np
)
tab.space()
tab.add_row(key="y", title=r"$N_{\Upsilon(%dS)}$" % ns)
tab.space()
for np in profile_cfg["nps"]:
title = (r"$\eps_{\chi_b(%dP) \to \Upsilon(%dS)" % (np, ns) +
r" \gamma}^{\gamma}$, \%")
tab.add_row(
key="e%d" % np,
title=title
)
tab.line()
for np in profile_cfg["nps"]:
tab.add_row(
key="f%d" % np,
title=r"Fraction $\chi_b(%dP)$, \%%" % np
)
values = {
"2011": defaultdict(list),
"2012": defaultdict(list),
}
for bin in bins:
for data_key in ["2011", "2012"]:
bin_group = tab.get_group(bin, data_key)
db_bin = db[data_key].get(bin, False)
db_y_bin = db_y[data_key][bin]
ups_key = "N%dS" % ns
nups = db_y_bin.get(ups_key, None)
bin_group.add_value(key="y", value=nups)
for np in profile_cfg["nps"]:
mct = mctools.MC(
db=db_mc["mc%s" % data_key]["ups%ds" % ns],
ns=profile_cfg["ns"],
np=np
)
key = "N%sP" % np
nchib = db_bin.get(key, None) if db_bin else None
bin_group.add_value(key=str(np), value=nchib)
eff = mct.eff(bin)
bin_group.add_value(key="e%d" % np, value=eff * 100)
# if nups and nchib and eff and (bin in axis_bins[np]):
if nups and nchib and eff:
frac = (VE(str(nchib)) / VE(str(eff))
/ VE(str(nups))) * 100
if bin in year_bins[np][data_key]:
values[data_key][np].append((bin, frac))
else:
frac = None
bin_group.add_value(key="f%d" %
np, value=frac, is_bold=True)
print(tab.texify())
graphs_cfg = profile_cfg["graphs"]
for np in profile_cfg["nps"]:
graphs = []
for data_key in ["2011", "2012"]:
graph_values = values[data_key][np]
if graph_values[0][0] != 5:
graph_values.insert(0, ((5, graph_values[0][0]), None))
g = graph.Graph(color=data_key, values=values[data_key][np])
graphs.append(g)
ymax = graphs_cfg[str(np)]["ymax"]
if ns == 1 and np == 1:
g = graph.Graph(color="2010", values=profile_cfg["2010"])
graphs.append(g)
mg = graph.MultiGraph(graphs=graphs, ymin=0, ymax=ymax)
mg.draw()
output_file = "fracs/%s_%d" % (profile_name, np)
tools.save_figure(output_file)
# -*- coding:utf-8 -*-
import network
import json
import sys
if __name__ == '__main__':
# 添加ezlab包路径 add module ezlab to path
sys.path.append('hotload')
from tools import load_config
# 是否开启热加载 hotloader mode or not
if load_config():
from hotload_server import hotloader
hotloader().Start()
else:
# your own code goes here
pass
from preprocess_data import load_data
from tools import load_config, save_params
ProcessedData = './processed_data/preprocess.p'
ProcessedParams = './processed_data/params.p'
ProcessedDataDir = './processed_data'
try:
title_count, title_set, genres2int, features, targets_values, ratings, users, movies, data, movies_orig, users_orig = pickle.load(
open(ProcessedDataDir + os.sep + 'preprocess.p', mode='rb'))
except OSError:
title_count, title_set, genres2int, features, targets_values, ratings, users, movies, data, movies_orig, users_orig = load_data()
embed_dim, uid_max, gender_max, age_max, job_max, movie_id_max, movie_categories_max, \
movie_title_max, combiner, sentences_size, window_sizes, filter_num = load_config()
movieid2idx = {val[0]: i for i, val in enumerate(movies.values)}
'''
Hyper parameters
'''
# Number of Epochs
num_epochs = 1
# Batch Size
batch_size = 256
dropout_keep = 0.5
# Learning Rate
# end setupDB
if __name__ == "__main__":
# run standalone, init SQL db, drop all tables and create all
import os, sys
py = sys.version_info
py3k = py >= (3, 0, 0)
try:
web_server_folder = os.path.join(os.getcwd(), '..', '..')
sys.path.insert(0, web_server_folder)
from tools import load_config # import from web server folder
config_file = os.path.join(os.getcwd(), 'config.json')
config = load_config(config_file)
DSN = config.get('DSN')
# for sqlite chdir to server folder
# if sqlite database is stored in server folder
os.chdir("../..")
msg = "Init SQL DB (drop and create all tables)? [Y/N]"
if py3k:
ans = input(msg)
else:
ans = raw_input(msg)
if ans.upper().startswith('Y'):
setupDB(DSN, True)
else:
print("SQL Init aborted.\nNothing changed.")
except Exception as ex:
print(ex)
# example of mask inference with a pre-trained model (COCO)
import sys
from keras.preprocessing.image import img_to_array
from keras.preprocessing.image import load_img
from mrcnn.config import Config
from mrcnn.model import MaskRCNN
from mrcnn.visualize import display_instances
from tools import load_config
# load config params - labels
cfg_dict = load_config('config.yaml')
class_names = cfg_dict['class_names']
# config settings for model inference
class ConfigParams(Config):
NAME = "test"
GPU_COUNT = 1
IMAGES_PER_GPU = 1
NUM_CLASSES = 1 + 80
# replicate the model for pure inference
rcnn_model = MaskRCNN(mode='inference', model_dir='models/', config=ConfigParams())
# model weights input
<<<<<<< HEAD
rcnn_model.load_weights('models/mask_rcnn_coco.h5', by_name=True)
=======
>>>>>>> 2ffc4581f4632ec494d19a7af0f5912e7482a631
path_weights_file = 'models/mask_rcnn_coco.h5'
rcnn_model.load_weights(path_weights_file, by_name=True)
def main():
cli_args = docopt(__doc__, version="1.0")
args = dict(cli_args)
log = Logger()
models = [
chib1s_mc_model.ChibMCModel,
chib2s_mc_model.ChibMCModel,
chib3s_mc_model.ChibMCModel,
]
tuples_cfg = tools.load_config("tuples")
mc_cfg = tools.load_config("mc")
mcfits_cfg = tools.load_config("mcfits") # binning
tree = ROOT.TChain("ChibAlg/Chib")
utree = ROOT.TChain("UpsilonAlg/Upsilon")
for filename in tuples_cfg[args["--data"]]:
tree.Add(filename)
utree.Add(filename)
# TODO: create arrays with respect to ns
if not args["--ns"]:
ns_arr = [1, 2, 3]
else:
ns_arr = [int(args["--ns"])]
if not args["--np"]:
np_arr = [1, 2, 3]
else:
np_arr = [int(args["--np"])]
if not args["--nb"]:
nb_arr = [1, 2]
else:
nb_arr = [int(args["--nb"])]
for ns in ns_arr:
decay_cfg = mc_cfg["decays"]["ups%ds" % ns]
for np in np_arr:
for nb in nb_arr:
if (ns == 2 and np == 1) or (ns == 3 and np < 3):
continue
axis = mcfits_cfg["axis"]["ups%ds" % ns]
process(
output_db=mcfits_cfg["output_db"],
output_figs=mcfits_cfg["output_figs"],
data_key=args["--data"],
tree=tree,
models=models,
ns=ns,
np=np,
nb=nb,
cut=decay_cfg["cut"],
pt_axis=axis,
is_unbinned=mc_cfg["unbinned?"],
binning=decay_cfg["binning"]["%d" % np],
is_save=args["-s"]
)
if args["-u"]:
print("Count upsilons")
count_upsilons(
name=mc_cfg["name"], data_key=args["--data"],
tree=utree, ns=ns, nb=nb, np=np,
pt_axis=axis,
cut=decay_cfg["ucut"], is_save=args["-s"])
if args['-i']:
db = tools.get_db(mcfits_cfg["output_db"])
print db.keys()
shell()
""" Reverse proxy for Next Bus server using flask """
import flask
from flask import Response, g, request
import reverseProxy
import tools
import time
import json
from flask_caching import Cache
from redis import ConnectionError
from redis import Redis
import logging
config = tools.load_config("config.ini")
##Setup Logging
#logging.basicConfig( filename='logs/nextbusApp.log',level=logging.DEBUG )
logging.basicConfig(level=logging.DEBUG)
logger = logging.getLogger('reverseProxyApp')
""" Initializing the flask app with redis caching """
APP = flask.Flask(__name__)
redis_host = config['proxy_config']['redis_host']
redis_port = config['proxy_config']['redis_port']
cache = Cache(APP,
config={
'CACHE_TYPE': 'redis',
'CACHE_REDIS_HOST': redis_host,
'CACHE_REDIS_PORT': redis_port,
'CACHE_DEFAULT_TIMEOUT':
config['proxy_config']['cache_timeout']
})
from control import DroneControl
import socketio
import threading
import config
import eventlet.wsgi
import tools
from data_parser import ParseAndWork
import time
if __name__ == '__main__':
sio = socketio.Server()
reset_config_data = tools.make_config(False)
tools.load_config()
worker = DroneControl(config.DRONE_LOCAL, sio)
print "Worker initialised"
@sio.on('connect')
def connect(sid, environ):
sio.emit("vehicle_success", worker.success)
@sio.on("vehicle_connect")
def vehicle_connect(sid):
if not worker.success:
worker.connect(config.DRONE_LOCAL)
tools.config_settable_init(worker)
else:
print "Already connected"
sio.emit('response', {'data': "Already connected"})
def trojan_detector(args):
"""
Overview:
This detector uses a gradient-based trigger inversion approach with these steps
- calculate the trigger inversion loss and the gradient w.r.t. trigger embeddings
- get the top-k most promising candidates with the gradient from the previous step
- calculate the trigger inversion loss of each of the top-k candidates
- pick the best candidate, which gives us the lowest trigger inversion loss, as the new trigger
- repeat until convergence
At the end of this procedure we use the trigger inversion loss as the only predictive feature
in a logistic regression model. If our trigger inversion approach was successful, we get
a very low trigger inversion loss (close to zero)
Input:
In order to perform trigger inversion we need at least one clean model with the same architecture
and dataset as the evaluation model, as well as clean examples (i.e. without the trigger).
Output:
This function's output depends on wether this is meant to be inside of a submission container or not
If it's a submission, we output the probability that the evaluation model is trojaned
Otherwise, we output the trigger inversion loss, which we then use to train our classifier
"""
# print args
for arg in vars(args):
print(f'{arg}: {getattr(args, arg)}')
# load config
if args.is_manual_config:
config = {
'source_dataset': args.source_dataset,
'model_architecture': args.model_architecture
}
else:
config = tools.load_config(args.eval_model_filepath)
# load all models and get the clean_model_filepaths, which is used to get additional clean examples
models, clean_model_filepaths = tools.load_models(
config, args, CLEAN_TRAIN_MODELS_FILEPATH, CLEAN_TEST_MODELS_FILEPATH,
DEVICE)
# add hooks to pull the gradients out from all models when doing backward in the compute_loss function
def add_hooks_to_all_models(models):
def add_hooks_to_single_model(model, is_clean):
def find_word_embedding_module(classification_model):
word_embedding_tuple = [
(name, module)
for name, module in classification_model.named_modules()
if 'embeddings.word_embeddings' in name
]
assert len(word_embedding_tuple) == 1
return word_embedding_tuple[0][1]
module = find_word_embedding_module(model)
module.weight.requires_grad = True
if is_clean:
def extract_clean_grad_hook(module, grad_in, grad_out):
EXTRACTED_GRADS['clean_train'].append(grad_out[0])
module.register_backward_hook(extract_clean_grad_hook)
else:
def extract_grad_hook(module, grad_in, grad_out):
EXTRACTED_GRADS['eval'].append(grad_out[0])
module.register_backward_hook(extract_grad_hook)
add_hooks_to_single_model(models['eval'][0], is_clean=False)
for clean_model in models['clean_train']:
add_hooks_to_single_model(clean_model, is_clean=True)
add_hooks_to_all_models(models)
# get the word_embeddings for all the models
input_id_embeddings = tools.get_all_input_id_embeddings(models)
tokenizer = tools.load_tokenizer(args.is_submission,
args.tokenizer_filepath, config)
# get the candidate pool of tokens to start from at random initialization
total_cand_pool = tools.get_most_changed_embeddings(
input_id_embeddings, tokenizer, DEVICE)
def only_keep_avg_input_id_embeddings(input_id_embeddings):
return {
model_type: {
'avg': input_id_embeddings[model_type]['avg']
}
for model_type in list(input_id_embeddings.keys())
}
input_id_embeddings = only_keep_avg_input_id_embeddings(
input_id_embeddings)
# load and transform qa dataset
dataset = tools.load_qa_dataset(args.examples_dirpath,
args.scratch_dirpath,
clean_model_filepaths,
more_clean_data=args.more_clean_data)
print(f'dataset length: {len(dataset)}')
tokenized_dataset = tools.tokenize_for_qa(tokenizer, dataset)
tokenized_dataset = tools.select_examples_with_an_answer_in_context(
tokenized_dataset, tokenizer)
tokenized_dataset = tools.select_unique_inputs(tokenized_dataset)
df = pd.DataFrame()
# these are the behavior|insterions specific to QA
for behavior, insertion in [('self', 'both'), ('cls', 'both'),
('self', 'context'), ('cls', 'context'),
('cls', 'question')]:
best_test_loss = None
start_time = time.time()
args.trigger_behavior, args.trigger_insertion_type = behavior, insertion
# add a dummy trigger into input_ids, attention_mask, and token_type as well as provide masks for loss calculations
triggered_dataset = tools.get_triggered_dataset(
args, DEVICE, tokenizer, tokenized_dataset)
# insert trigger and populate baselines
def insert_trigger_and_populate_baselines():
tools.insert_new_trigger(
args, triggered_dataset,
torch.tensor([tokenizer.pad_token_id] * args.trigger_length,
device=DEVICE).long())
# zero out attention on trigger
tools.insert_new_trigger(args,
triggered_dataset,
torch.zeros(args.trigger_length,
device=DEVICE).long(),
where_to_insert='attention_mask')
# train loss to get train baseline
tools.compute_loss(args,
models,
triggered_dataset,
args.batch_size,
DEVICE,
LAMBDA,
with_gradient=False,
populate_baselines=True)
# test loss to get train baseline
models['clean_test'] = [
model.to(DEVICE, non_blocking=True)
for model in models['clean_test']
]
tools.compute_loss(args,
models,
triggered_dataset,
args.batch_size,
DEVICE,
LAMBDA,
with_gradient=False,
train_or_test='test',
populate_baselines=True)
models['clean_test'] = [
model.to(CPU, non_blocking=True)
for model in models['clean_test']
]
# add back attention
tools.insert_new_trigger(args,
triggered_dataset,
torch.ones(args.trigger_length,
device=DEVICE).long(),
where_to_insert='attention_mask')
insert_trigger_and_populate_baselines()
triggered_dataset = tools.take_best_k_inputs(triggered_dataset)
def put_embeds_on_device(device=DEVICE):
input_id_embeddings['eval']['avg'] = input_id_embeddings['eval'][
'avg'].to(device, non_blocking=True)
input_id_embeddings['clean_train']['avg'] = input_id_embeddings[
'clean_train']['avg'].to(device, non_blocking=True)
put_embeds_on_device()
for i in range(args.num_random_tries):
# get and insert new trigger
num_non_random_tries = args.num_random_tries // 2 if 'electra' in config[
'model_architecture'] else 2 * (args.num_random_tries // 3)
init_fn = args.trigger_init_fn if i < num_non_random_tries else 'random'
new_trigger = tools.initialize_trigger(args, init_fn,
total_cand_pool, tokenizer,
DEVICE)
tools.insert_new_trigger(args, triggered_dataset, new_trigger)
old_trigger, n_iter = torch.tensor([
randint(0, 20000) for _ in range(args.trigger_length)
]).to(DEVICE), 0
with autocast():
# main trigger inversion loop for a given random start
while not torch.equal(old_trigger,
new_trigger) and n_iter < args.max_iter:
n_iter += 1
old_trigger, old_loss = deepcopy(
new_trigger), tools.compute_loss(args,
models,
triggered_dataset,
args.batch_size,
DEVICE,
LAMBDA,
with_gradient=True)
@torch.no_grad()
def find_best_k_candidates_for_each_trigger_token(
num_candidates, tokenizer):
'''
equation 2: (embedding_matrix - trigger embedding)T @ trigger_grad
'''
embeds_shape = [
len(triggered_dataset['input_ids']), -1,
input_id_embeddings['eval']['avg'].shape[-1]
]
def get_mean_trigger_grads(eval_or_clean):
concat_grads = torch.cat(
EXTRACTED_GRADS[eval_or_clean])
grads_list = []
if args.trigger_insertion_type in [
'context', 'both'
]:
mean_context_grads_over_inputs = concat_grads[
triggered_dataset['c_trigger_mask']].view(
embeds_shape).mean(dim=0)
grads_list.append(
mean_context_grads_over_inputs)
if args.trigger_insertion_type in [
'question', 'both'
]:
mean_question_grads_over_inputs = concat_grads[
triggered_dataset['q_trigger_mask']].view(
embeds_shape).mean(dim=0)
grads_list.append(
mean_question_grads_over_inputs)
return torch.stack(grads_list).mean(dim=0)
eval_mean_trigger_grads = get_mean_trigger_grads(
'eval')
clean_train_mean_trigger_grads = get_mean_trigger_grads(
'clean_train')
eval_grad_dot_embed_matrix = torch.einsum(
"ij,kj->ik", (eval_mean_trigger_grads,
input_id_embeddings['eval']['avg']))
eval_grad_dot_embed_matrix[
eval_grad_dot_embed_matrix !=
eval_grad_dot_embed_matrix] = 1e2
clean_grad_dot_embed_matrix = torch.einsum(
"ij,kj->ik",
(clean_train_mean_trigger_grads,
input_id_embeddings['clean_train']['avg']))
clean_grad_dot_embed_matrix[
clean_grad_dot_embed_matrix !=
clean_grad_dot_embed_matrix] = 1e2
# fill nans
eval_grad_dot_embed_matrix[
eval_grad_dot_embed_matrix !=
eval_grad_dot_embed_matrix] = 1e2
clean_grad_dot_embed_matrix[
clean_grad_dot_embed_matrix !=
clean_grad_dot_embed_matrix] = 1e2
# weigh clean_train and eval dot products and get the smallest ones for each position
gradient_dot_embedding_matrix = eval_grad_dot_embed_matrix + LAMBDA * clean_grad_dot_embed_matrix
BANNED_TOKEN_IDS = [
tokenizer.pad_token_id, tokenizer.cls_token_id,
tokenizer.unk_token_id, tokenizer.sep_token_id,
tokenizer.mask_token_id
]
for token_id in BANNED_TOKEN_IDS:
gradient_dot_embedding_matrix[:, token_id] = 1e2
_, best_k_ids = torch.topk(
-gradient_dot_embedding_matrix,
num_candidates,
dim=1)
return best_k_ids
candidates = find_best_k_candidates_for_each_trigger_token(
args.num_candidates, tokenizer)
candidates = tools.add_candidate_variations_to_candidates(
old_trigger, args, candidates)
def clear_all_model_grads(models):
for model_type, model_list in models.items():
for model in model_list:
optimizer = optim.Adam(model.parameters())
optimizer.zero_grad(set_to_none=True)
for model_type in EXTRACTED_GRADS.keys():
EXTRACTED_GRADS[model_type] = []
clear_all_model_grads(models)
new_loss, new_trigger = tools.evaluate_and_pick_best_candidate(
args, models, DEVICE, LAMBDA, old_loss, old_trigger,
triggered_dataset, candidates, args.beam_size)
tools.insert_new_trigger(args, triggered_dataset,
new_trigger)
if args.is_submission == False:
tools.print_results_of_trigger_inversion_iterate(
n_iter, tokenizer, old_loss, new_loss, old_trigger,
new_trigger, LAMBDA, triggered_dataset)
del old_loss, candidates
new_test_loss = tools.get_new_test_loss(
args, models, triggered_dataset, DEVICE, LAMBDA)
if best_test_loss is None or best_test_loss[
'trigger_inversion_loss'] > new_test_loss[
'trigger_inversion_loss']:
best_trigger, best_train_loss, best_test_loss = deepcopy(
new_trigger), deepcopy(new_loss), deepcopy(new_test_loss)
if best_test_loss[
'trigger_inversion_loss'] < args.stopping_threshold:
break
torch.cuda.empty_cache()
df = tools.add_results_to_df(args, df, tokenizer, best_trigger,
best_train_loss, best_test_loss,
total_cand_pool, triggered_dataset,
start_time)
if args.is_submission:
tools.submit_results()
else:
tools.save_results(df, args)
def main():
label = input('Enter config file label: ')
config = tools.load_config(label)
correction = config['correction']
ap_func = get_func(config['ap_func'])
evaluate(config, ap_func, correction, label)
def main():
cli_args = docopt(__doc__, version='v1.0')
cfg_tuples = tools.load_config("tuples")
cfg_pol = tools.load_config("polarization")
chib_chain = ROOT.TChain("ChibAlg/Chib")
ups_chain = ROOT.TChain("UpsilonAlg/Upsilon")
cfg_decays = tools.load_config("mc")["decays"]
# ups_chain = ROOT.TChain("UpsilonAlg/Upsilon")
name = cli_args["--name"]
for data_key in cfg_pol["data_keys"]:
save_to = "{name}/{data_key}/".format(name=name, data_key=data_key)
chib_chain.Reset()
ups_chain.Reset()
for ntuple_file in cfg_tuples[data_key]:
print "NTuple ", ntuple_file
chib_chain.Add(ntuple_file)
ups_chain.Add(ntuple_file)
for ns in cfg_pol["ns"]:
cfg_cuts = cfg_decays["ups%ds" % ns]
chib_cut = cfg_cuts["cut"]
ups_cut = cfg_cuts["ucut"]
# tools.tree_preselect(chib_chain, chib_cut)
# tools.tree_preselect(ups_chain, ups_cut)
for np in cfg_pol["np"]:
if np not in pdg.VALID_UPS_DECAYS[ns]:
continue
axis = cfg_pol["axis"]["ups%ds" % ns][str(np)]
for nb in cfg_pol["nb"]:
d, dangles = process(ns=ns, nb=nb, np=np, chain=chib_chain,
cut=chib_cut, axis=axis)
n, nangles = process(ns=ns, nb=nb, np=np, chain=ups_chain,
cut=ups_cut, axis=axis)
# ref = d[3] // n[3]
res = []
for i in range(3):
if nb == 1 and i > 1:
continue
# h_old = (d[i] // n[i]) / ref
h = d[3].Clone(pyroot.hID())
for j in h:
r1 = (d[i][j] / d[3][j]).value()
r2 = (n[i][j] / n[3][j]).value()
s2d = ((d[i][j].error() ** 2 -
d[i][j].value() ** 2 / d[3][j].value()) /
(d[3][j] - 1) ** 2)
s2n = ((n[i][j].error() ** 2 -
n[i][j].value() ** 2 / n[3][j].value()) /
(n[3][j] - 1) ** 2)
h[j] = (
pyroot.VE(r1, s2d) /
pyroot.VE(r2, s2n)
)
h.red()
# h_old.blue()
res.append(h)
h.Draw()
h.level(1)
if cli_args['--save']:
tools.save_figure(
name=(save_to +
"chib{nb}{np}p_ups{ns}s_w{w}_ratio"
.format(nb=nb, np=np, ns=ns, w=i))
)
for angle in dangles:
hunpol = dangles[angle][3]
hunpol.scale()
for i in range(0, 3):
h = dangles[angle][i]
if not h.GetEntries():
continue
h.scale()
wname = "w%d" % i
tools.draw_hists([h, hunpol], minimum=0)
if cli_args['--save']:
tools.save_figure(
save_to +
"/angles/{wname}_{angle}_chib{nb}{np}p_ups{ns}s".format(
wname=wname, angle=angle, nb=nb, np=np, ns=ns)
)
if cli_args['--save']:
save(data_key, ns, np, nb, res, d, n)
# chib_chain.SetEntryList(0)
# ups_chain.SetEntryList(0)
shell()
# External Packages
import matplotlib.pyplot as plt
import matplotlib.animation as anim
import numpy as np
# Custom Packages
import tools
# Get input to designate system for plotting
label = input('Enter config file label (e.g. core): ')
config = tools.load_config(label)
fig = plt.figure()
plt.axis('square')
# Define limits of plot relative to the lengths of the rods
lim = (config['L1'] + config['L2'])*1.25
ax = plt.axes(xlim=(-lim, lim), ylim=(-lim, lim))
mass1, = ax.plot([], [], 'o', lw=9)
mass2, = ax.plot([], [], 'o', lw=9)
rod1, = ax.plot([], [], lw=2)
rod2, = ax.plot([], [], lw=2)
positions = np.loadtxt('data/double_positions_%s.txt' % label)
t = positions[:, 0]
x1 = positions[:, 1]
y1 = positions[:, 2]
x2 = positions[:, 3]
y2 = positions[:, 4]
if building_number_first:
try:
match = re.search(regex2, street_name)
building_number = match.group()
mod_number = match.expand(r'\1\2\3\4')
street_name = mod_number + ', ' + street_name.replace(building_number, '').strip()
except AttributeError:
None
return street_name.strip()
if __name__ == "__main__":
# Config ----------------------------------------------------------------------------
config = load_config('config.yaml')
xls_path = config['xls']['path']
xls_name = os.path.splitext(os.path.basename(xls_path))[0]
xls_has_header = config['xls']['has_header']
xls_min_row = config['xls']['min_row']
xls_max_row = config['xls']['max_row']
xls_max_column = config['xls']['max_column']
address_columns_indxs = config['address']['col_indxs']
illegal_street_names = config['address']['illegal_street_names']
abbrev_dict = config['address']['abbrev_expansions']
remove_abbrev = config['address']['remove_abbrev']
strict_search = config['strict_search']
