def __init__(self, classes_num = 3):
classes = classes_num
super(Net_3d_Scale, self).__init__()
self.img_in_block = NetInBlock(4, 24, 2)
self.img_down_block1 = NetDownBlock(24, 48, 2)#48*48*48
self.img_down_block2 = NetDownBlock(48, 64, 2)#24*24*24
self.img_down_block3 = NetDownBlock(64, 128, 2)#12*12*12
self.img_down_block4 = NetDownBlock(128, 256, 2)#6*6*6
self.def_in_block = NetInBlock(6, 24, 2)
self.def_down_block1 = NetDownBlock(24, 48, 2)#48*48*48
self.def_down_block2 = NetDownBlock(48, 64, 2)#24*24*24
self.def_down_block3 = NetDownBlock(64, 128, 2)#12*12*12
self.def_down_block4 = NetDownBlock(128, 256, 2)#6*6*6
self.fc_block1 = nn.AdaptiveMaxPool3d((1,1,1))
self.fc_block2 = nn.Linear(512, 1)
self.fc_block3 = nn.Sigmoid()
self.down_24_1 = nn.Sequential()
self.down_24_1.add_module('conv_1', nn.Conv3d(7,24,kernel_size=3, stride=2, padding=1))
self.down_24_1.add_module('conv_2', nn.Conv3d(24,48,kernel_size=3, stride=2))
self.down_24_1.add_module('conv_3', nn.AdaptiveMaxPool3d((1,1,1)))
self.up_block3 = NetUpBlock_DI(512, 128, 128, 256, 2)#12
self.up_block4 = NetUpBlock_DI(256, 64, 64, 160, 2)#24
self.out24_1 = NetInBlock(160, 64, 2)
self.out24_2 = NetInBlock(64, 32, 2)
self.out24_3 = NetOutSingleBlock(32, classes)
self.up_block5 = NetJustUpBlock(160, 80, 2)#48
self.out48_1 = NetInBlock(80, 32, 2)
self.out48_2 = NetInBlock(64, 32, 2)
self.out48_3 = NetOutSingleBlock(32, classes)
self.down_48_1 = nn.Sequential()
self.down_48_1.add_module('conv_1', nn.Conv3d(7,24,kernel_size=3, stride=2, padding=1))
self.down_48_1.add_module('conv_2', nn.Conv3d(24,48,kernel_size=3, stride=2, padding=1))
self.down_48_1.add_module('conv_3', nn.Conv3d(48,96,kernel_size=3, stride=2))
self.down_48_1.add_module('conv_4', nn.AdaptiveMaxPool3d((1,1,1)))
self.up_block6 = NetJustUpBlock(80, 32, 2)#96
self.out96_1 = NetInBlock(64, 32, 1)
self.out96_block = NetOutSingleBlock(32, classes)
self.down_96_1 = nn.Sequential()
self.down_96_1.add_module('conv_1', nn.Conv3d(7,24,kernel_size=3, stride=2, padding=1))
self.down_96_1.add_module('conv_2', nn.Conv3d(24,48,kernel_size=3, stride=2, padding=1))
self.down_96_1.add_module('conv_3', nn.Conv3d(48,96,kernel_size=3, stride=2, padding=1))
self.down_96_1.add_module('conv_4', nn.Conv3d(96,192,kernel_size=3, stride=2))
self.down_96_1.add_module('conv_5', nn.AdaptiveMaxPool3d((1,1,1)))
self.fc_def2 = nn.Linear(336, 1)
self.warp_layer96 = SpatialTransformer(96,96,96)
self.warp_layer48 = SpatialTransformer(48,48,48)
self.warp_layer24 = SpatialTransformer(24,24,24)
self.upsample = nn.Upsample(scale_factor=2, mode='trilinear')#Interpolate(scale_factor=(2, 2, 2), mode='trilinear')
def __init__(self,
lfb_cfg,
fbo_cfg,
temporal_pool_type='avg',
spatial_pool_type='max'):
super().__init__()
fbo_type = fbo_cfg.pop('type', 'non_local')
assert fbo_type in FBOHead.fbo_dict
assert temporal_pool_type in ['max', 'avg']
assert spatial_pool_type in ['max', 'avg']
self.lfb_cfg = copy.deepcopy(lfb_cfg)
self.fbo_cfg = copy.deepcopy(fbo_cfg)
self.lfb = LFB(**self.lfb_cfg)
self.fbo = self.fbo_dict[fbo_type](**self.fbo_cfg)
# Pool by default
if temporal_pool_type == 'avg':
self.temporal_pool = nn.AdaptiveAvgPool3d((1, None, None))
else:
self.temporal_pool = nn.AdaptiveMaxPool3d((1, None, None))
if spatial_pool_type == 'avg':
self.spatial_pool = nn.AdaptiveAvgPool3d((None, 1, 1))
else:
self.spatial_pool = nn.AdaptiveMaxPool3d((None, 1, 1))
def __init__(
self,
temporal_pool_type='avg',
spatial_pool_type='max',
in_channels=2048,
focal_gamma=0.,
focal_alpha=1.,
num_classes=81, # First class reserved (BBox as pos/neg)
dropout_ratio=0,
dropout_before_pool=True,
topk=(3, 5),
multilabel=True):
super(BBoxHeadAVA, self).__init__()
assert temporal_pool_type in ['max', 'avg']
assert spatial_pool_type in ['max', 'avg']
self.temporal_pool_type = temporal_pool_type
self.spatial_pool_type = spatial_pool_type
self.in_channels = in_channels
self.num_classes = num_classes
self.dropout_ratio = dropout_ratio
self.dropout_before_pool = dropout_before_pool
self.multilabel = multilabel
self.focal_gamma = focal_gamma
self.focal_alpha = focal_alpha
if topk is None:
self.topk = ()
elif isinstance(topk, int):
self.topk = (topk, )
elif isinstance(topk, tuple):
assert all([isinstance(k, int) for k in topk])
self.topk = topk
else:
raise TypeError('topk should be int or tuple[int], '
f'but get {type(topk)}')
# Class 0 is ignored when calculating accuracy,
# so topk cannot be equal to num_classes.
assert all([k < num_classes for k in self.topk])
in_channels = self.in_channels
# Pool by default
if self.temporal_pool_type == 'avg':
self.temporal_pool = nn.AdaptiveAvgPool3d((1, None, None))
else:
self.temporal_pool = nn.AdaptiveMaxPool3d((1, None, None))
if self.spatial_pool_type == 'avg':
self.spatial_pool = nn.AdaptiveAvgPool3d((None, 1, 1))
else:
self.spatial_pool = nn.AdaptiveMaxPool3d((None, 1, 1))
if dropout_ratio > 0:
self.dropout = nn.Dropout(dropout_ratio)
self.fc_cls = nn.Linear(in_channels, num_classes)
self.debug_imgs = None
def __init__(self):
super(_3DCNN, self).__init__(
) # 第二、三行都是python类继承的基本操作,此写法应该是python2.7的继承格式,但python3里写这个好像也可以
self.conv1 = nn.Conv3d(
1, 8, kernel_size=3, stride=1,
padding=1) # in_channels, out_channels, kernel_size=3*3*3
self.conv2 = nn.Conv3d(8, 16, kernel_size=3, stride=1, padding=1)
self.conv3 = nn.Conv3d(16, 32, kernel_size=3, stride=1, padding=1)
self.conv4 = nn.Conv3d(32, 64, kernel_size=3, stride=1, padding=1)
self.conv5 = nn.Conv3d(64, 128, kernel_size=3, stride=1, padding=1)
self.BN3d1 = nn.BatchNorm3d(num_features=8) # num_feature为输入数据通道数
self.BN3d2 = nn.BatchNorm3d(num_features=16)
self.BN3d3 = nn.BatchNorm3d(num_features=32)
self.BN3d4 = nn.BatchNorm3d(num_features=64)
self.BN3d5 = nn.BatchNorm3d(num_features=128)
self.pool1 = nn.AdaptiveMaxPool3d(
(61, 73, 61)) # (61,73,61) is output size
self.pool2 = nn.AdaptiveMaxPool3d((31, 37, 31))
self.pool3 = nn.AdaptiveMaxPool3d((16, 19, 16))
self.pool4 = nn.AdaptiveMaxPool3d((8, 10, 8))
self.pool5 = nn.AdaptiveMaxPool3d((4, 5, 4))
self.dropout = nn.Dropout(p=0.5)
self.fc1 = nn.Linear(10240, 1300) # 接着三个全连接层
self.fc2 = nn.Linear(1300, 50)
self.fc3 = nn.Linear(50, 2)
def __init__(self,
lfb_prefix_path,
dataset_mode='train',
use_half_precision=True,
temporal_pool_type='avg',
spatial_pool_type='max',
pretrained=None):
super().__init__()
rank, _ = get_dist_info()
if rank == 0:
if not osp.exists(lfb_prefix_path):
print(f'lfb prefix path {lfb_prefix_path} does not exist. '
f'Creating the folder...')
mmcv.mkdir_or_exist(lfb_prefix_path)
print('\nInferring LFB...')
assert temporal_pool_type in ['max', 'avg']
assert spatial_pool_type in ['max', 'avg']
self.lfb_prefix_path = lfb_prefix_path
self.dataset_mode = dataset_mode
self.use_half_precision = use_half_precision
self.pretrained = pretrained
# Pool by default
if temporal_pool_type == 'avg':
self.temporal_pool = nn.AdaptiveAvgPool3d((1, None, None))
else:
self.temporal_pool = nn.AdaptiveMaxPool3d((1, None, None))
if spatial_pool_type == 'avg':
self.spatial_pool = nn.AdaptiveAvgPool3d((None, 1, 1))
else:
self.spatial_pool = nn.AdaptiveMaxPool3d((None, 1, 1))
self.all_features = []
self.all_metadata = []
def forward(self, x, xray):
# CT
x = F.interpolate(x, (128, 128, 128))
out = self.map1(x)
out = F.relu(self.bn1(out))
# out = F.relu(out)
out = nn.AdaptiveMaxPool3d((128, 128, 128))(out)
out = self.map2(out)
out = F.relu(self.bn2(out))
# out = F.relu(out)
out = nn.AdaptiveMaxPool3d((64, 64, 64))(out)
out = self.map3(out)
out = F.relu(self.bn3(out))
# out = F.relu(out)
out = nn.AdaptiveMaxPool3d((32, 32, 32))(out)
out = self.map4(out)
out = F.relu(self.bn4(out))
# out = F.relu(out)
out = nn.AdaptiveMaxPool3d((32, 32, 32))(out)
out = out.view((1, -1))
out_ct = F.relu(self.fc_ct(out))
# X-ray
xray = F.interpolate(xray, (xray.shape[2] // 2, xray.shape[3] // 2))
out = self.conv1(xray)
out = F.relu(self.bn1_x(out))
# out = F.relu(out)
out = nn.AdaptiveMaxPool2d((128, 128))(out)
out = self.conv2(out)
out = F.relu(self.bn2_x(out))
# out = F.relu(out)
out = nn.AdaptiveMaxPool2d((64, 64))(out)
out = self.conv3(out)
out = F.relu(self.bn3_x(out))
# out = F.relu(out)
out = nn.AdaptiveMaxPool2d((32, 32))(out)
out = self.conv4(out)
out = F.relu(self.bn4_x(out))
# out = F.relu(out)
out = nn.AdaptiveMaxPool2d((32, 32))(out)
out = out.view((1, -1))
out_xray = F.relu(self.fc_x(out))
out = torch.cat((out_ct, out_xray), dim=-1)
out = F.relu(self.fc1(out))
out = F.relu(self.fc2(out))
out = F.relu(self.fc3(out))
out = self.fc_out(out)
return out
def __init__(self, state_dim, action_dim):
super(Critic, self).__init__()
self.conv1 = nn.Conv3d(in_channels=1, out_channels=16, kernel_size=3)
self.bn1 = nn.BatchNorm3d(16)
self.conv2 = nn.Conv3d(in_channels=16, out_channels=action_dim, kernel_size=3)
self.bn2 = nn.BatchNorm3d(action_dim)
self.adaptiveMaxPool = nn.AdaptiveMaxPool3d(1)
self.max_action = max_action
###
self.conv1a = nn.Conv3d(in_channels=1, out_channels=16, kernel_size=3)
self.bn1a = nn.BatchNorm3d(16)
self.conv2a = nn.Conv3d(in_channels=16, out_channels=action_dim, kernel_size=3)
self.bn2a = nn.BatchNorm3d(action_dim)
self.adaptiveMaxPoola = nn.AdaptiveMaxPool3d(1)
def resnet3d(num_classes, expansion=False, maxpool=False):
"""
Args:
num_classes (int):
Returns:
torch.nn.modules.module.Module
"""
model = r2plus1d_18(pretrained=False, progress=True)
num_features = model.fc.in_features
if expansion:
model.fc = nn.Sequential(
OrderedDict([
('dense', nn.Linear(in_features=num_features,
out_features=200)),
('norm', nn.BatchNorm1d(num_features=200)),
('relu', nn.ReLU()), ('dropout', nn.Dropout(p=0.25)),
('last', nn.Linear(in_features=200, out_features=num_classes))
]))
else:
model.fc = nn.Linear(num_features, num_classes, bias=True)
if maxpool:
model.avgpool = nn.AdaptiveMaxPool3d(output_size=(1, 1, 1))
return model
def __init__(self, n_inputs, n_classes, init_type=None):
super().__init__()
net_args = model_types['unet-simple']
self.mapping_network = ReducedUnet(**net_args,
n_inputs=n_inputs,
n_ouputs=n_inputs,
return_feat_maps=True)
n_filters_map = self.mapping_network.n_output_filters
self.conv2d_1d = nn.Sequential(
nn.Conv3d(n_filters_map,
64,
kernel_size=(1, 3, 3),
padding=(0, 1, 1)), nn.ReLU(inplace=True),
nn.Conv3d(64, 64, kernel_size=(3, 1, 1), padding=(1, 0, 0)),
nn.Conv3d(64, 64, kernel_size=(1, 3, 3), padding=(0, 1, 1)),
nn.ReLU(inplace=True),
nn.Conv3d(64, 32, kernel_size=(3, 1, 1), padding=(1, 0, 0)),
nn.AdaptiveMaxPool3d((1, 1, None)))
self.fc_clf = nn.Linear(32, n_classes)
#initialize model
if init_type is not None:
for m in self.modules():
init_weights(m, init_type=init_type)
def __init__(self, input_dim, output_dim):
super(conv_hybrid, self).__init__()
self.inp_dim = input_dim
self.out_dim = output_dim
incep_output_dim = 128
self.inception1 = nn.Sequential(
nn.Conv2d(input_dim, incep_output_dim, kernel_size=1),
nn.MaxPool2d(3))
self.inception2 = nn.Conv2d(input_dim, incep_output_dim, kernel_size=3)
self.conv_cat = nn.Sequential(
nn.ReLU(), nn.LocalResponseNorm(3, k=2),
nn.Conv2d(incep_output_dim * 2, 128, kernel_size=1), nn.ReLU(),
nn.LocalResponseNorm(3, k=2))
self.residual = nn.Sequential(
nn.Conv2d(128, 128, kernel_size=1),
nn.ReLU(),
nn.Conv2d(128, 128, kernel_size=1),
)
self.activat = nn.ReLU()
self.conv_alex = nn.Sequential(
nn.ReLU(), nn.Conv2d(128, 128, kernel_size=1), nn.ReLU(),
nn.Dropout(), nn.Conv2d(128, 128, kernel_size=1), nn.ReLU(),
nn.Dropout(), nn.Conv2d(128, 128, kernel_size=1),
nn.AdaptiveMaxPool3d((output_dim, None, None)))
def __init__(
self,
penet_params,
freeze_penet=True,
device=0,
):
super(PE_MIL, self).__init__()
self.penet = PENet(**penet_params)
self.avg_pool = nn.AdaptiveAvgPool3d(1)
self.max_pool = nn.AdaptiveMaxPool3d((None, 1, 1))
self.mil_model = MIL_SoftmaxAttention(inplanes=768,
midplanes=512,
dropout=0.1)
if freeze_penet:
for param in self.penet.parameters():
#print(param)
param.requires_grad = False
self.fine_tuning_param('out_conv')
self.fine_tuning_param('asp_pool')
self.fine_tuning_param('encoders.2')
self.fine_tuning_param('encoders.1')
self.fine_tuning_param('encoders.0')
self.fine_tuning_param('in_conv')
# freeze bn
for m in self.modules():
if isinstance(m, nn.BatchNorm2d) or isinstance(m, nn.GroupNorm):
for p in m.parameters():
p.requires_grad = False
def __init__(self, num_classes, input_channel=3):
super(C3D, self).__init__()
self.feature = nn.Sequential(
nn.Conv3d(input_channel,
64,
kernel_size=(3, 3, 3),
padding=(1, 1, 1)),
nn.MaxPool3d(kernel_size=(1, 2, 2), stride=(1, 2, 2)),
nn.Conv3d(64, 128, kernel_size=(3, 3, 3), padding=(1, 1, 1)),
nn.MaxPool3d(kernel_size=(2, 2, 2), stride=(2, 2, 2)),
nn.Conv3d(128, 256, kernel_size=(3, 3, 3), padding=(1, 1, 1)),
nn.Conv3d(256, 256, kernel_size=(3, 3, 3), padding=(1, 1, 1)),
nn.MaxPool3d(kernel_size=(2, 2, 2), stride=(2, 2, 2)),
nn.Conv3d(256, 512, kernel_size=(3, 3, 3), padding=(1, 1, 1)),
nn.Conv3d(512, 512, kernel_size=(3, 3, 3), padding=(1, 1, 1)),
nn.MaxPool3d(kernel_size=(2, 2, 2), stride=(2, 2, 2)),
nn.Conv3d(512, 512, kernel_size=(3, 3, 3), padding=(1, 1, 1)),
nn.Conv3d(512, 512, kernel_size=(3, 3, 3), padding=(1, 1, 1)),
nn.AdaptiveMaxPool3d(output_size=(1, 4, 4)))
self.fc = nn.Sequential(nn.Linear(8192, 4096), nn.ReLU(inplace=True),
nn.Dropout3d(0.5), nn.Linear(4096, 4096),
nn.ReLU(inplace=True), nn.Dropout3d(0.5),
nn.Linear(4096, num_classes))
self.__init_weight()
def __init__(self,
block,
layers,
num_classes,
mode='ip',
add_landmarks=False):
super().__init__()
assert mode in ['ip', 'ir']
self.mode = mode
self.add_landmarks = add_landmarks
self.in_channels = 64
if add_landmarks:
self.conv1 = nn.Conv3d(4,
64,
kernel_size=(3, 7, 7),
stride=(1, 2, 2),
padding=(1, 3, 3),
bias=False)
else:
self.conv1 = nn.Conv3d(3,
64,
kernel_size=(3, 7, 7),
stride=(1, 2, 2),
padding=(1, 3, 3),
bias=False)
self.bn1 = nn.BatchNorm3d(64)
self.gn1 = nn.GroupNorm(1, 64)
self.relu = nn.ReLU()
self.max_pool = nn.MaxPool3d(kernel_size=(1, 3, 3),
stride=(1, 2, 2),
padding=(0, 1, 1))
self.layer1 = self._make_layer(block, 64, layers[0], stride=1)
#self.tat_layer = TATLayer(in_channels=256)
self.nl_1 = NONLocalBlock3D(in_channels=256)
self.layer2 = self._make_layer(block, 128, layers[1], stride=2)
self.nl_2 = NONLocalBlock3D(in_channels=512)
self.layer3 = self._make_layer(block, 256, layers[2], stride=2)
self.nl_3 = NONLocalBlock3D(in_channels=1024)
self.layer4 = self._make_layer(block, 512, layers[3], stride=2)
self.global_avg_pool = nn.AdaptiveAvgPool3d(1) # 原文是avgpool
self.global_max_pool = nn.AdaptiveMaxPool3d(1)
self.fc1 = nn.Linear(512 * block.expansion * 2, 9)
#self.fc2 = nn.Linear(256, num_classes)
self.dropout = nn.Dropout()
self.relu = nn.ReLU()
self.tanh = nn.Tanh()
# initialize
for m in self.modules():
if isinstance(m, nn.Conv3d):
nn.init.kaiming_normal_(m.weight,
mode='fan_out',
nonlinearity='relu')
elif isinstance(m, nn.BatchNorm3d) or isinstance(m, nn.GroupNorm):
m.weight.data.fill_(1)
m.bias.data.zero_()
def __init__(self):
super(FCN, self).__init__()
self.dropout = nn.Dropout2d(p=0.2)
self.batch_norm1 = nn.BatchNorm2d(8)
self.batch_norm2 = nn.BatchNorm2d(16)
self.batch_norm3 = nn.BatchNorm2d(32)
self.batch_norm4 = nn.BatchNorm2d(16)
self.batch_norm5 = nn.BatchNorm2d(2)
self.conv1 = nn.Conv2d(in_channels=1,
out_channels=8,
kernel_size=(3, 3))
self.conv2 = nn.Conv2d(in_channels=8,
out_channels=16,
kernel_size=(3, 3))
self.conv3 = nn.Conv2d(in_channels=16,
out_channels=32,
kernel_size=(3, 3))
self.conv4 = nn.Conv2d(in_channels=32,
out_channels=16,
kernel_size=(1, 1))
self.conv5 = nn.Conv2d(in_channels=16,
out_channels=2,
kernel_size=(1, 1))
self.global_pool = nn.AdaptiveMaxPool3d((2, 1, 1))
self.padding = 1
def __init__(self, input_channels, n_classes):
super(SSNet, self).__init__()
self.input_channels = input_channels
self.n_classes = n_classes
self.features_size = 8000
self.loss_func = nn.CrossEntropyLoss()
self.train_accuracy = torchmetrics.Accuracy()
self.val_accuracy = torchmetrics.Accuracy()
self.conv1 = nn.Sequential(nn.Conv3d(1, 8, (7, 3, 3), stride=1),
nn.LeakyReLU(), nn.MaxPool3d(2))
self.conv2 = nn.Sequential(nn.Conv3d(8, 16, (5, 3, 3), stride=1),
nn.LeakyReLU(), nn.MaxPool3d(2))
self.conv3 = nn.Sequential(nn.Conv3d(16, 32, (3, 3, 3), stride=1),
nn.LeakyReLU(),
nn.AdaptiveMaxPool3d((10, 5, 5)))
# self.conv4 = nn.Sequential(
# nn.Conv2d(32, 64, (3, 3), stride=1),
# nn.LeakyReLU())
self.fc1 = nn.Sequential(nn.Linear(self.features_size, 256),
nn.LeakyReLU(), nn.Dropout(0.5))
self.fc2 = nn.Sequential(nn.Linear(256, 128), nn.LeakyReLU(),
nn.Dropout(0.5),
nn.Linear(128, self.n_classes))
def __init__(self,
in_channels,
kernels=3,
scale=1.0,
norm='none',
residual=True,
**kwargs):
super(DynamicAttention, self).__init__()
self.scale = scale
self.residual = residual
self.key = nn.Sequential(
*conv_1xkxk_bn(in_channels,
in_channels,
kernels,
1,
groups=in_channels,
norm=norm), HSwish(),
*conv_1x1x1_bn(in_channels, in_channels, norm=norm),
nn.AdaptiveMaxPool3d((1, 1, 1)))
self.value = nn.Sequential(
*conv_1xkxk_bn(in_channels,
in_channels,
kernels,
1,
groups=in_channels,
norm=norm), HSwish(),
*conv_1x1x1_bn(in_channels, in_channels, norm=norm))
def __init__(self):
super(TumorClassifier, self).__init__()
self.featureExtractor = nn.Sequential(
nn.Conv3d(1, 8, 3, stride=1, padding=1), #40
nn.BatchNorm3d(8),
nn.ReLU(),
nn.Conv3d(8, 16, 3, stride=1, padding=1),
nn.BatchNorm3d(16),
nn.ReLU(),
nn.Conv3d(16, 16, 3, stride=1, padding=1),
nn.BatchNorm3d(16),
nn.ReLU(),
nn.MaxPool3d(2), #20
nn.Conv3d(16, 32, 3, stride=1, padding=1),
nn.BatchNorm3d(32),
nn.ReLU(),
nn.Conv3d(32, 32, 3, stride=1, padding=1),
nn.BatchNorm3d(32),
nn.ReLU(),
nn.MaxPool3d(2), #10
nn.Conv3d(32, 64, 3, stride=1, padding=1),
nn.BatchNorm3d(64),
nn.ReLU(),
nn.MaxPool3d(2), #5
nn.Conv3d(64, 128, 3, stride=1, padding=1),
nn.ReLU(),
nn.Conv3d(128, 64, 1),
nn.ReLU(),
nn.Conv3d(64, 1, 1),
nn.Sigmoid(),
nn.AdaptiveMaxPool3d(1)
#nn.AdaptiveMaxPool3d(1),
)
self.classifier = nn.Sequential(nn.Linear(128, 64), nn.ReLU(),
nn.Linear(64, 1), nn.Sigmoid())
def __init__(self, in_planes, rotio=16):
super(ChannelAttention3d, self).__init__()
self.avg_pool = nn.AdaptiveAvgPool3d(1)
self.max_pool = nn.AdaptiveMaxPool3d(1)
self.sharedMLP = nn.Sequential(
nn.Conv3d(in_planes, in_planes // rotio, 1, bias=False), nn.ReLU(),
nn.Conv3d(in_planes // rotio, in_planes, 1, bias=False))
def __init__(self,
spatial_type: str = 'avg',
spatial_size: int = 7,
temporal_size: int = 1):
super(SimpleSTModule, self).__init__()
assert spatial_type in ['avg', 'max']
self.spatial_type = spatial_type
self.spatial_size = spatial_size
if spatial_size != -1:
self.spatial_size = (spatial_size, spatial_size)
self.temporal_size = temporal_size
assert not (self.spatial_size == -1) ^ (self.temporal_size == -1)
if self.temporal_size == -1 and self.spatial_size == -1:
self.pool_size = (1, 1, 1)
if self.spatial_type == 'avg':
self.pool_func = nn.AdaptiveAvgPool3d(self.pool_size)
if self.spatial_type == 'max':
self.pool_func = nn.AdaptiveMaxPool3d(self.pool_size)
else:
self.pool_size = (self.temporal_size, ) + self.spatial_size
if self.spatial_type == 'avg':
self.pool_func = nn.AvgPool3d(self.pool_size,
stride=1,
padding=0)
if self.spatial_type == 'max':
self.pool_func = nn.MaxPool3d(self.pool_size,
stride=1,
padding=0)
def forward(self, x):
sz = x.size()
if len(sz) == 3:
if self.avg_pool is None:
self.avg_pool = nn.AdaptiveAvgPool1d(1)
self.max_pool = nn.AdaptiveMaxPool1d(1)
# Take the input and apply average and max pooling
avg_values = self.avg_pool(x)
max_values = self.max_pool(x)
out = (self.mlp(avg_values) + self.mlp(max_values)).view(sz[0], sz[1], 1)
if len(sz) == 4:
if self.avg_pool is None:
self.avg_pool = nn.AdaptiveAvgPool2d(1)
self.max_pool = nn.AdaptiveMaxPool2d(1)
# Take the input and apply average and max pooling
avg_values = self.avg_pool(x)
max_values = self.max_pool(x)
out = (self.mlp(avg_values) + self.mlp(max_values)).view(sz[0], sz[1], 1, 1)
if len(sz) == 5:
if self.avg_pool is None:
self.avg_pool = nn.AdaptiveAvgPool3d(1)
self.max_pool = nn.AdaptiveMaxPool3d(1)
# Take the input and apply average and max pooling
avg_values = self.avg_pool(x)
max_values = self.max_pool(x)
out = (self.mlp(avg_values) + self.mlp(max_values)).view(sz[0], sz[1], 1, 1, 1)
scale = x * th.sigmoid(out)
return scale
def __init__(self,
num_classes,
in_channels,
loss_cls=dict(type='CrossEntropyLoss'),
spatial_type='avg',
dropout_ratio=0.5,
init_std=0.01,
fc1_bias=False):
super().__init__(num_classes, in_channels, loss_cls)
self.spatial_type = spatial_type
self.dropout_ratio = dropout_ratio
self.init_std = init_std
if self.dropout_ratio != 0:
self.dropout = nn.Dropout(p=self.dropout_ratio)
else:
self.dropout = None
self.in_channels = in_channels
self.mid_channels = 2048
self.num_classes = num_classes
self.fc1_bias = fc1_bias
self.fc1 = nn.Linear(
self.in_channels, self.mid_channels, bias=self.fc1_bias)
self.fc2 = nn.Linear(self.mid_channels, self.num_classes)
self.relu = nn.ReLU()
self.pool = None
if self.spatial_type == 'avg':
self.pool = nn.AdaptiveAvgPool3d((1, 1, 1))
elif self.spatial_type == 'max':
self.pool = nn.AdaptiveMaxPool3d((1, 1, 1))
else:
raise NotImplementedError
def __init__(self, num_classes=1):
super(AlexNet3D_Dropout, self).__init__()
self.features = nn.Sequential(
nn.Conv3d(1, 64, kernel_size=5, stride=2, padding=0),
nn.BatchNorm3d(64),
nn.ReLU(inplace=True),
nn.MaxPool3d(kernel_size=3, stride=3),
nn.Conv3d(64, 128, kernel_size=3, stride=1, padding=0),
nn.BatchNorm3d(128),
nn.ReLU(inplace=True),
nn.MaxPool3d(kernel_size=3, stride=3),
nn.Conv3d(128, 192, kernel_size=3, padding=1),
nn.BatchNorm3d(192),
nn.ReLU(inplace=True),
nn.Conv3d(192, 192, kernel_size=3, padding=1),
nn.BatchNorm3d(192),
nn.ReLU(inplace=True),
nn.Conv3d(192, 128, kernel_size=3, padding=1),
nn.BatchNorm3d(128),
nn.ReLU(inplace=True),
nn.AdaptiveMaxPool3d(1),
)
self.regressor = nn.Sequential(nn.Dropout(), nn.Linear(128, 64),
nn.ReLU(inplace=True), nn.Dropout(),
nn.Linear(64, num_classes))
for m in self.modules():
if isinstance(m, nn.Conv2d):
n = m.kernel_size[0] * m.kernel_size[1] * m.out_channels
m.weight.data.normal_(0, math.sqrt(2. / n))
elif isinstance(m, nn.BatchNorm3d):
m.weight.data.fill_(1)
m.bias.data.zero_()
def __init__(self, in_channels=3, n_outputs=2):
super().__init__()
self.conv1 = nn.Conv3d(in_channels,
64,
3,
stride=2,
padding=0)
self.conv2 = nn.Conv3d(64, 64, 3, stride=1, padding=0)
self.bn1 = nn.BatchNorm3d(64)
self.conv3 = nn.Conv3d(64, 128, 3, stride=2, padding=0)
self.conv4 = nn.Conv3d(128, 128, 3, stride=1, padding=0)
self.bn2 = nn.BatchNorm3d(128)
self.conv5 = nn.Conv3d(128, 256, 3, stride=2, padding=0)
self.conv6 = nn.Conv3d(256,
256, (1, 3, 3),
stride=1,
padding=0)
self.bn3 = nn.BatchNorm3d(256)
self.pool = nn.AdaptiveMaxPool3d((1, 16, 16))
self.fc1 = nn.Linear(in_features=65536, out_features=1024)
self.dropout1 = nn.Dropout(p=0.5, inplace=True)
self.fc2 = nn.Linear(1024, 64)
self.dropout2 = nn.Dropout(p=0.1, inplace=True)
self.fc3 = nn.Linear(64, n_outputs)
def __init__(self):
super(AttentionModule, self).__init__()
self.temporal_size = 4
self.height = 8
self.width = 8
reduction_ratio = 16
self.spatial_attention = nn.Sequential(
nn.Conv3d(512,
1,
kernel_size=(1, self.height, self.width),
bias=True), nn.BatchNorm3d(1), nn.Sigmoid())
self.temporal_attention = nn.Sequential(
nn.Conv3d(512,
1,
kernel_size=(self.temporal_size, 1, 1),
bias=True), nn.BatchNorm3d(1), nn.Sigmoid())
self.avg_pool = nn.AdaptiveAvgPool3d(512)
self.max_pool = nn.AdaptiveMaxPool3d(512)
# self.channel_attention = nn.Sequential(
# Flatten(),
# nn.Linear(512, 512 // reduction_ratio),
# nn.ReLU(),
# nn.Linear(512 // reduction_ratio, 512)
# )
self.sigmoid = nn.Sigmoid()
self.relu = nn.ReLU()
def __init__(self, depth=18):
super(R2Plus1D, self).__init__()
self.conv1 = nn.Sequential(
nn.Conv3d(3,
64,
kernel_size=(3, 7, 7),
padding=(1, 3, 3),
stride=(1, 2, 2),
bias=False),
nn.BatchNorm3d(64),
nn.ReLU(inplace=True),
)
if depth == 10:
self.conv2x = BasicR2P1DBlock(64, 64)
self.conv3x = BasicR2P1DBlock(64, 128, stride=(2, 2, 2))
self.conv4x = BasicR2P1DBlock(128, 256, stride=(2, 2, 2))
self.conv5x = BasicR2P1DBlock(256, 512, stride=(2, 2, 2))
elif depth == 18:
self.conv2x = nn.Sequential(BasicR2P1DBlock(64, 64),
BasicR2P1DBlock(64, 64))
self.conv3x = nn.Sequential(
BasicR2P1DBlock(64, 128, stride=(2, 2, 2)),
BasicR2P1DBlock(128, 128))
self.conv4x = nn.Sequential(
BasicR2P1DBlock(128, 256, stride=(2, 2, 2)),
BasicR2P1DBlock(256, 256))
self.conv5x = nn.Sequential(
BasicR2P1DBlock(256, 512, stride=(2, 2, 2)),
BasicR2P1DBlock(512, 512))
self.pool = nn.AdaptiveMaxPool3d((1, 1, 1))
self.out_dim = 512
def __init__(
self,
spatial_type='avg',
spatial_size=7,
temporal_size=4,
consensus_cfg=dict(type='avg', dim=1),
dropout_ratio=0.5,
in_channels=2048,
num_classes=400,
init_std=0.01,
fcn_testing=False,
extract_feat=False,
):
super(I3DClsHead,
self).__init__(spatial_size, dropout_ratio, in_channels,
num_classes, init_std, extract_feat)
self.spatial_type = spatial_type
self.consensus_type = consensus_cfg['type']
self.temporal_size = temporal_size
assert not (self.spatial_size == -1) ^ (self.temporal_size == -1)
if self.temporal_size == -1 and self.spatial_size == -1:
self.pool_size = (1, 1, 1)
if self.spatial_type == 'avg':
self.Logits = nn.AdaptiveAvgPool3d(self.pool_size)
if self.spatial_type == 'max':
self.Logits = nn.AdaptiveMaxPool3d(self.pool_size)
else:
self.pool_size = (self.temporal_size, ) + self.spatial_size
if self.spatial_type == 'avg':
self.Logits = nn.AvgPool3d(self.pool_size, stride=1, padding=0)
if self.spatial_type == 'max':
self.Logits = nn.MaxPool3d(self.pool_size, stride=1, padding=0)
self.fc_cls = nn.Linear(self.in_channels, self.num_classes)
self.fcn_testing = fcn_testing
self.new_cls = None
def __init__(self):
super(NNPoolingModule, self).__init__()
self.input1d = torch.randn(1, 16, 50)
self.module1d = nn.ModuleList([
nn.MaxPool1d(3, stride=2),
nn.AvgPool1d(3, stride=2),
nn.LPPool1d(2, 3, stride=2),
nn.AdaptiveMaxPool1d(3),
nn.AdaptiveAvgPool1d(3),
])
self.input2d = torch.randn(1, 16, 30, 10)
self.module2d = nn.ModuleList([
nn.MaxPool2d((3, 2), stride=(2, 1)),
nn.AvgPool2d((3, 2), stride=(2, 1)),
nn.FractionalMaxPool2d(3, output_ratio=(0.5, 0.5)),
nn.LPPool2d(2, 3, stride=(2, 1)),
nn.AdaptiveMaxPool2d((5, 7)),
nn.AdaptiveAvgPool2d((7)),
])
self.input3d = torch.randn(1, 16, 20, 4, 4)
self.module3d = nn.ModuleList([
nn.MaxPool3d(2),
nn.AvgPool3d(2),
nn.FractionalMaxPool3d(2, output_ratio=(0.5, 0.5, 0.5)),
nn.AdaptiveMaxPool3d((5, 7, 9)),
nn.AdaptiveAvgPool3d((5, 7, 9)),
])
def __init__(self, n_inputs, n_classes, init_type=None, batch_norm=False):
super().__init__()
if batch_norm:
net_args = model_types['unet-simple-bn']
else:
net_args = model_types['unet-simple']
self.mapping_network = ReducedUnet(**net_args,
n_inputs=n_inputs,
n_ouputs=n_inputs,
return_feat_maps=True)
n_filters_map = self.mapping_network.n_output_filters
layers = get_conv2dplus1d(n_filters_map, 64, 64, batch_norm)
if batch_norm:
layers += [nn.BatchNorm3d(64)]
layers += [nn.ReLU(inplace=True)] + get_conv2dplus1d(
64, 32, 64, batch_norm) + [nn.AdaptiveMaxPool3d((1, 1, None))]
self.conv2d_1d = nn.Sequential(*layers)
self.fc_clf = nn.Linear(32, n_classes)
#initialize model
if init_type is not None:
for m in self.modules():
init_weights(m, init_type=init_type)
def __init__(self, channel, depth): super(CDcor, self).__init__() self.channel = channel self.depth = depth self.gp = nn.Sequential( nn.AdaptiveMaxPool3d((1, 1, 1)), nn.ReLU(inplace=True) ) self.fc_channel = nn.Sequential( nn.Linear(self.channel, self.channel // 16, bias = False), nn.ReLU(inplace=True), nn.Linear(self.channel//16, self.channel, bias = False), nn.Sigmoid() ) self.fc_depth = nn.Sequential( nn.Linear(self.depth, self.depth // 16, bias = False), nn.ReLU(inplace=True), nn.Linear(self.depth//16, self.depth, bias = False), nn.Sigmoid() ) self.correlation = nn.Sequential( nn.Linear(self.channel, self.channel // 16, bias = False), nn.ReLU(inplace=True), nn.Linear(self.channel//16, self.depth, bias = False), nn.Sigmoid() )
def __init__(self, input_dim, input_w, input_h, output_dim):
super(fconv3d_net, self).__init__()
self.inp_w = input_w
self.inp_h = input_h
self.out_dim = output_dim
kernel_size = 7
kernel_num = 20
self.conv = nn.Sequential(
nn.Conv3d(1, kernel_num, kernel_size=kernel_size, stride=1),
nn.ReLU(),
nn.LocalResponseNorm(3, k=2),
nn.Conv3d(kernel_num,
kernel_num,
kernel_size=kernel_size,
stride=1),
nn.ReLU(),
nn.LocalResponseNorm(3, k=2),
nn.ConvTranspose3d(kernel_num,
kernel_num,
kernel_size=kernel_size,
stride=1),
nn.ReLU(),
nn.Dropout(),
nn.ConvTranspose3d(kernel_num,
1,
kernel_size=kernel_size,
stride=1),
nn.ReLU(),
nn.Dropout(),
nn.Conv3d(1, 128, kernel_size=1),
)
self.out_layer = nn.AdaptiveMaxPool3d((output_dim, None, None))