def test_gaussian_posterior(self):
priors = [
GaussianPrior(size=1, mean=0.5, var=1.0),
GaussianPrior(size=1, mean=-2.5, var=10.0)
]
for prior in priors:
self._test_function_posterior(prior, self.records)
def test_gaussian_second_moment(self):
priors = [
GaussianPrior(size=1, mean=0.5, var=1.0),
GaussianPrior(size=1, mean=-0.3, var=0.5)
]
for prior in priors:
self._test_function_second_moment(prior)
def build_sparse_fft_student(size, prior_var, fft_rho, fft_var, noise_var):
x_shape = (size, )
fft_shape = (2, ) + x_shape
student = (GaussianPrior(size=size, var=prior_var) @ SIMOVariable(
id="x", n_next=2) @ (GaussianChannel(var=noise_var) @ O("y") +
(DFTChannel(real=True) + GaussBernouilliPrior(
size=fft_shape, var=fft_var, rho=fft_rho))
@ MILeafVariable(id="z", n_prev=2))).to_model()
return student
def build_sparse_grad_student(N, rho, noise_var):
x_shape = (N, )
z_shape = (1, N)
student = (GaussianPrior(size=x_shape) @ SIMOVariable(id="x", n_next=2) @ (
GaussianChannel(var=noise_var) @ O("y") +
(GradientChannel(shape=x_shape) + GaussBernoulliPrior(
size=z_shape, rho=rho)) @ MILeafVariable(id="z", n_prev=2))
).to_model()
return student
def build_VAE_prior(self, params):
"""
Build a VAE prior with loaded weights
"""
shape = self.shape
assert self.N == 784
biases, weights = self.load_VAE_prior(params)
if params['id'] == '20_relu_400_sigmoid_784_bias':
D, N1, N = 20, 400, 28*28
W1, W2 = weights
b1, b2 = biases
prior_x = (GaussianPrior(size=D) @ V(id="z_0") @
LinearChannel(W1, name="W_1") @ V(id="Wz_1") @ BiasChannel(b1) @ V(id="b_1") @ LeakyReluChannel(0) @ V(id="z_1") @
LinearChannel(W2, name="W_2") @ V(id="Wz_2") @ BiasChannel(b2) @ V(id="b_2") @ HardTanhChannel() @ V(id="z_2") @
ReshapeChannel(prev_shape=self.N, next_shape=self.shape))
else:
raise NotImplementedError
return prior_x
def math(self):
return "coon"
def sample(self):
return self.x
coon = CoonPrior()
x_shape = coon.size
blur = Blur2DChannel(shape=x_shape, sigma=[10, 10])
noise = GaussianChannel(var=0.1)
teacher = MultiLayerModel([coon, blur, noise], ids=["x", "z", "y"])
# teacher.plot()
# %%
# Basic gaussian denoiser
# We use only a gaussian prior on $x$ (the coon image was standardized to have mean=0 and std=1)
# basic deconv model
prior = GaussianPrior(size=x_shape)
basic_deconv = MultiLayerModel([prior, blur, noise], ids=["x", "z", "y"])
scenario = TeacherStudentScenario(teacher, basic_deconv, x_ids=["x", "z"])
scenario.setup(seed=1)
# scenario.student.plot()
_ = scenario.run_ep(max_iter=100, damping=0)
# %%
plot_data(scenario.x_true, scenario.observations["y"], scenario.x_pred)
compare_hcut(scenario.x_true, scenario.x_pred)
import pytest
import numpy as np
from numpy.testing import assert_allclose
from tramp.priors import (GaussianPrior, GaussBernoulliPrior, BinaryPrior,
ExponentialPrior, PositivePrior,
GaussianMixturePrior, MAP_L1NormPrior,
MAP_L21NormPrior)
from tramp.checks.check_limits import check_prior_BO_limit, check_prior_BN_limit
from tramp.checks.check_gradients import (
check_prior_grad_BO, check_prior_grad_BO_BN, check_prior_grad_RS,
check_prior_grad_FG, check_prior_grad_EP_scalar,
check_prior_grad_EP_diagonal, EPSILON)
EP_PRIORS = [
GaussianPrior(size=100, isotropic=False),
GaussBernoulliPrior(size=100, isotropic=False),
BinaryPrior(size=100, isotropic=False),
ExponentialPrior(size=100, isotropic=False),
PositivePrior(size=100, isotropic=False),
GaussianMixturePrior(size=100, isotropic=False)
]
@pytest.mark.parametrize("prior", EP_PRIORS +
[MAP_L1NormPrior(size=100, isotropic=False)])
def test_separable_prior_vectorization(prior):
assert not prior.isotropic
N = np.prod(prior.size)
ax = np.linspace(1, 2, N)
ax = ax.reshape(prior.size)
bx = np.linspace(-2, 2, N)
)
).to_model()
# teacher.plot()
sample = teacher.sample()
plot_histograms(sample)
plot_data(sample, sample["y"])
# %%
# Sparse gradient denoising
# sparse grad denoiser
grad_shape = (2,) + x_shape
sparse_grad = (
GaussianPrior(size=x_shape) @
SIMOVariable(id="x", n_next=2) @ (
noise @ O("y") + (
GradientChannel(shape=x_shape) +
GaussBernouilliPrior(size=grad_shape, var=0.7, rho=0.9)
) @
MILeafVariable(id="x'", n_prev=2)
)
).to_model()
scenario = TeacherStudentScenario(teacher, sparse_grad, x_ids=["x", "x'"])
scenario.setup(seed=1)
# scenario.student.plot()
_ = scenario.run_ep(max_iter=100, damping=0.1)
prior = RaccoonPrior()
x_shape = prior.size
noise = GaussianChannel(var=0.5)
grad_shape = (2, ) + x_shape
teacher = (prior @ SIMOVariable("x", n_next=2)
@ (GradientChannel(x_shape) @ O("x'") + noise @ O("y"))).to_model()
sample = teacher.sample()
plot_histograms(sample)
plot_data(sample, sample["y"])
# %%
# Sparse gradient denoising
grad_shape = (2, ) + x_shape
sparse_grad = (GaussianPrior(size=x_shape) @ SIMOVariable(id="x", n_next=2)
@ (noise @ O("y") +
(GradientChannel(shape=x_shape) +
GaussBernoulliPrior(size=grad_shape, var=0.7, rho=0.9))
@ MILeafVariable(id="x'", n_prev=2))).to_model()
scenario = TeacherStudentScenario(teacher, sparse_grad, x_ids=["x", "x'"])
scenario.setup(seed=1)
scenario.student.plot()
_ = scenario.run_ep(max_iter=100, damping=0.1)
plot_data(scenario.x_pred, scenario.observations["y"])
compare_hcut(scenario.x_true,
scenario.x_pred,
scenario.observations["y"],
h=20)