def post(self):
form = cgi.FieldStorage()
chem_name = form.getvalue('chemical_name')
use = form.getvalue('Use')
formu_name = form.getvalue('Formulated_product_name')
a_i = form.getvalue('percent_ai')
a_i = float(a_i)/100
Application_type = form.getvalue('Application_type')
seed_crop = float(form.getvalue('seed_crop'))
p_i = form.getvalue('percent_incorporated')
p_i = float(p_i)/100
seed_treatment_formulation_name = form.getvalue('seed_treatment_formulation_name')
den = form.getvalue('density_of_product')
den = float(den)
m_s_r_p = form.getvalue('maximum_seedling_rate_per_use')
m_s_r_p = float(m_s_r_p)
r_s = form.getvalue('row_sp')
r_s=float(r_s)
b_w = form.getvalue('bandwidth') #convert to ft
b_w = float(b_w)/12
if Application_type=='Seed Treatment':
a_r_p=seed_crop #coefficient used to estimate initial conc.
n_a = 1
rate_out = []
day_out = []
rate_out.append(float(form.getvalue('rate_seed')))
day_out.append(float(form.getvalue('day_seed')))
else:
a_r_p=0
n_a = float(form.getvalue('noa'))
rate_out = []
day_out = []
for i in range(int(n_a)):
j=i+1
rate_temp = form.getvalue('rate'+str(j))
rate_out.append(float(rate_temp))
day_temp = float(form.getvalue('day'+str(j)))
day_out.append(day_temp)
h_l = form.getvalue('Foliar_dissipation_half_life')
ld50_bird = form.getvalue('avian_ld50')
lc50_bird = form.getvalue('avian_lc50')
NOAEC_bird = form.getvalue('avian_NOAEC')
NOAEC_bird = float(NOAEC_bird)
NOAEL_bird = form.getvalue('avian_NOAEL')
NOAEL_bird = float(NOAEL_bird)
Species_of_the_tested_bird = form.getvalue('Species_of_the_tested_bird')
aw_bird_sm = form.getvalue('body_weight_of_the_assessed_bird_small')
aw_bird_sm = float(aw_bird_sm)
aw_bird_md = form.getvalue('body_weight_of_the_assessed_bird_medium')
aw_bird_md = float(aw_bird_md)
aw_bird_lg = form.getvalue('body_weight_of_the_assessed_bird_large')
aw_bird_lg = float(aw_bird_lg)
if Species_of_the_tested_bird == 'Bobwhite quail':
tw_bird = form.getvalue('bw_quail')
elif Species_of_the_tested_bird == 'Mallard duck':
tw_bird = form.getvalue('bw_duck')
else:
tw_bird = form.getvalue('bwb_other')
tw_bird = float(tw_bird)
x = form.getvalue('mineau_scaling_factor')
ld50_mamm = form.getvalue('mammalian_ld50')
lc50_mamm = form.getvalue('mammalian_lc50')
lc50_mamm=float(lc50_mamm)
NOAEC_mamm = form.getvalue('mammalian_NOAEC')
NOAEC_mamm = float(NOAEC_mamm)
NOAEL_mamm = form.getvalue('mammalian_NOAEL')
aw_mamm_sm = form.getvalue('body_weight_of_the_assessed_mammal_small')
aw_mamm_sm = float(aw_mamm_sm)
aw_mamm_md = form.getvalue('body_weight_of_the_assessed_mammal_medium')
aw_mamm_md = float(aw_mamm_md)
aw_mamm_lg = form.getvalue('body_weight_of_the_assessed_mammal_large')
aw_mamm_lg = float(aw_mamm_lg)
tw_mamm = form.getvalue('body_weight_of_the_tested_mammal')
tw_mamm = float(tw_mamm)
text_file = open('trex2/trex2_description.txt','r')
x1 = text_file.read()
templatepath = os.path.dirname(__file__) + '/../templates/'
html = template.render(templatepath + '01uberheader.html', {'title':'Ubertool'})
html = html + template.render(templatepath + '02uberintroblock_wmodellinks.html', {'model':'trex2','page':'output'})
html = html + template.render (templatepath + '03ubertext_links_left.html', {})
html = html + template.render(templatepath + '04uberoutput_start.html', {
'model':'trex2',
'model_attributes':'T-Rex 1.5.1 Output'})
trex_obj = trex2_model.trex2(chem_name, use, formu_name, a_i, Application_type, r_s, b_w, a_r_p, p_i, den, h_l, n_a, rate_out, day_out,
ld50_bird, lc50_bird, NOAEC_bird, NOAEL_bird, aw_bird_sm, aw_bird_md, aw_bird_lg, Species_of_the_tested_bird,
tw_bird, x, ld50_mamm, lc50_mamm, NOAEC_mamm, NOAEL_mamm, aw_mamm_sm, aw_mamm_md, aw_mamm_lg, tw_mamm,
m_s_r_p)
html = html + trex2_tables.table_all(trex_obj)[0]
html = html + template.render(templatepath + 'export.html', {})
html = html + template.render(templatepath + '04uberoutput_end.html', {'sub_title': ''})
html = html + template.render(templatepath + '06uberfooter.html', {'links': ''})
self.response.out.write(html)
def post(self):
form = cgi.FieldStorage()
chem_name = form.getvalue('chemical_name')
use = form.getvalue('Use')
formu_name = form.getvalue('Formulated_product_name')
a_i = form.getvalue('percent_ai')
a_i = float(a_i)/100
Application_type = form.getvalue('Application_type')
seed_crop = float(form.getvalue('seed_crop'))
seed_crop_v = form.getvalue('seed_crop_v')
p_i = form.getvalue('percent_incorporated')
p_i = float(p_i)/100
seed_treatment_formulation_name = form.getvalue('seed_treatment_formulation_name')
den = form.getvalue('density_of_product')
den = float(den)
m_s_r_p = form.getvalue('maximum_seedling_rate_per_use')
m_s_r_p = float(m_s_r_p)
r_s = form.getvalue('row_sp')
r_s=float(r_s)
b_w = form.getvalue('bandwidth') #convert to ft
b_w = float(b_w)/12
if Application_type=='Seed Treatment':
n_a = 1
else:
n_a = float(form.getvalue('noa'))
rate_out = []
day_out = []
for i in range(int(n_a)):
j=i+1
rate_temp = form.getvalue('rate'+str(j))
rate_out.append(float(rate_temp))
day_temp = float(form.getvalue('day'+str(j)))
day_out.append(day_temp)
h_l = form.getvalue('Foliar_dissipation_half_life')
ld50_bird = form.getvalue('avian_ld50')
lc50_bird = form.getvalue('avian_lc50')
NOAEC_bird = float(form.getvalue('avian_NOAEC'))
try:
NOAEL_bird = float(form.getvalue('avian_NOAEL'))
except:
NOAEL_bird = 'N/A'
aw_bird_sm = form.getvalue('body_weight_of_the_assessed_bird_small')
aw_bird_sm = float(aw_bird_sm)
aw_bird_md = form.getvalue('body_weight_of_the_assessed_bird_medium')
aw_bird_md = float(aw_bird_md)
aw_bird_lg = form.getvalue('body_weight_of_the_assessed_bird_large')
aw_bird_lg = float(aw_bird_lg)
Species_of_the_tested_bird_avian_ld50 = form.getvalue('Species_of_the_tested_bird_avian_ld50')
Species_of_the_tested_bird_avian_lc50 = form.getvalue('Species_of_the_tested_bird_avian_lc50')
Species_of_the_tested_bird_avian_NOAEC = form.getvalue('Species_of_the_tested_bird_avian_NOAEC')
Species_of_the_tested_bird_avian_NOAEL = form.getvalue('Species_of_the_tested_bird_avian_NOAEL')
tw_bird_ld50 = float(form.getvalue('bw_avian_ld50'))
tw_bird_lc50 = float(form.getvalue('bw_avian_lc50'))
tw_bird_NOAEC = float(form.getvalue('bw_avian_NOAEC'))
tw_bird_NOAEL = float(form.getvalue('bw_avian_NOAEL'))
x = form.getvalue('mineau_scaling_factor')
ld50_mamm = form.getvalue('mammalian_ld50')
try:
lc50_mamm = float(form.getvalue('mammalian_lc50'))
except:
lc50_mamm = 'N/A'
NOAEC_mamm = form.getvalue('mammalian_NOAEC')
NOAEC_mamm = float(NOAEC_mamm)
NOAEL_mamm = form.getvalue('mammalian_NOAEL')
aw_mamm_sm = form.getvalue('body_weight_of_the_assessed_mammal_small')
aw_mamm_sm = float(aw_mamm_sm)
aw_mamm_md = form.getvalue('body_weight_of_the_assessed_mammal_medium')
aw_mamm_md = float(aw_mamm_md)
aw_mamm_lg = form.getvalue('body_weight_of_the_assessed_mammal_large')
aw_mamm_lg = float(aw_mamm_lg)
tw_mamm = form.getvalue('body_weight_of_the_tested_mammal')
tw_mamm = float(tw_mamm)
text_file = open('trex2/trex2_description.txt','r')
x1 = text_file.read()
templatepath = os.path.dirname(__file__) + '/../templates/'
ChkCookie = self.request.cookies.get("ubercookie")
html = uber_lib.SkinChk(ChkCookie, "TREX 1.5.2 Output")
html = html + template.render(templatepath + '02uberintroblock_wmodellinks.html', {'model':'trex2','page':'output'})
html = html + template.render (templatepath + '03ubertext_links_left.html', {})
html = html + template.render(templatepath + '04uberoutput_start.html', {
'model':'trex2',
'model_attributes':'T-Rex 1.5.2 Output'})
trex2_obj = trex2_model.trex2("single", chem_name, use, formu_name, a_i, Application_type, seed_treatment_formulation_name, seed_crop, seed_crop_v, r_s, b_w, p_i, den, h_l, n_a, rate_out, day_out,
ld50_bird, lc50_bird, NOAEC_bird, NOAEL_bird, aw_bird_sm, aw_bird_md, aw_bird_lg,
Species_of_the_tested_bird_avian_ld50, Species_of_the_tested_bird_avian_lc50, Species_of_the_tested_bird_avian_NOAEC, Species_of_the_tested_bird_avian_NOAEL,
tw_bird_ld50, tw_bird_lc50, tw_bird_NOAEC, tw_bird_NOAEL, x, ld50_mamm, lc50_mamm, NOAEC_mamm, NOAEL_mamm, aw_mamm_sm, aw_mamm_md, aw_mamm_lg, tw_mamm,
m_s_r_p)
html = html + trex2_tables.timestamp(trex2_obj)
html = html + trex2_tables.table_all(trex2_obj)[0]
html = html + template.render(templatepath + 'export.html', {})
html = html + template.render(templatepath + '04uberoutput_end.html', {'sub_title': ''})
html = html + template.render(templatepath + '06uberfooter.html', {'links': ''})
# logger.info(trex2_obj.__dict__)
rest_funcs.save_dic(html, trex2_obj.__dict__, "trex2", "single")
self.response.out.write(html)
def post(self):
form = cgi.FieldStorage()
# print form
# args={}
# for keys in form:
# args[keys]=form.getvalue(keys)
drop_size = form.getvalue("drop_size")
ecosystem_type = form.getvalue("ecosystem_type")
application_method = form.getvalue("application_method")
boom_height = form.getvalue("boom_height")
orchard_type = form.getvalue("orchard_type")
# application_rate = form.getvalue('application_rate')
aquatic_type = form.getvalue("aquatic_type")
distance = form.getvalue("distance")
calculation_input = form.getvalue("calculation_input")
# init_avg_dep_foa = form.getvalue('init_avg_dep_foa')
# avg_depo_gha = form.getvalue('avg_depo_gha')
# avg_depo_lbac = form.getvalue('avg_depo_lbac')
# deposition_ngL = form.getvalue('deposition_ngL')
# deposition_mgcm = form.getvalue('deposition_mgcm')
# nasae = form.getvalue('nasae')
# y = form.getvalue('y')
# x = form.getvalue('x')
# express_y = form.getvalue('express_y')
chem_name = form.getvalue("chemical_name")
use = form.getvalue("Use")
formu_name = form.getvalue("Formulated_product_name")
a_i = form.getvalue("percent_ai")
print a_i
a_i = float(a_i) / 100
Application_type = form.getvalue("Application_type")
seed_crop = float(form.getvalue("seed_crop"))
seed_crop_v = form.getvalue("seed_crop_v")
p_i = form.getvalue("percent_incorporated")
p_i = float(p_i) / 100
seed_treatment_formulation_name = form.getvalue("seed_treatment_formulation_name")
den = form.getvalue("density_of_product")
den = float(den)
m_s_r_p = form.getvalue("maximum_seedling_rate_per_use")
m_s_r_p = float(m_s_r_p)
r_s = form.getvalue("row_sp")
r_s = float(r_s)
b_w = form.getvalue("bandwidth") # convert to ft
b_w = float(b_w) / 12
if Application_type == "Seed Treatment":
n_a = 1
else:
n_a = float(form.getvalue("noa"))
rate_out = []
day_out = [0]
for i in range(int(n_a)):
j = i + 1
rate_temp = form.getvalue("rate" + str(j))
rate_out.append(float(rate_temp))
# day_temp = float(form.getvalue('day'+str(j)))
# day_out.append(day_temp)
h_l = form.getvalue("Foliar_dissipation_half_life")
ld50_bird = form.getvalue("avian_ld50")
lc50_bird = form.getvalue("avian_lc50")
NOAEC_bird = float(form.getvalue("avian_NOAEC"))
try:
NOAEL_bird = float(form.getvalue("avian_NOAEL"))
except:
NOAEL_bird = "N/A"
aw_bird_sm = form.getvalue("body_weight_of_the_assessed_bird_small")
aw_bird_sm = float(aw_bird_sm)
aw_bird_md = form.getvalue("body_weight_of_the_assessed_bird_medium")
aw_bird_md = float(aw_bird_md)
aw_bird_lg = form.getvalue("body_weight_of_the_assessed_bird_large")
aw_bird_lg = float(aw_bird_lg)
Species_of_the_tested_bird_avian_ld50 = form.getvalue("Species_of_the_tested_bird_avian_ld50")
Species_of_the_tested_bird_avian_lc50 = form.getvalue("Species_of_the_tested_bird_avian_lc50")
Species_of_the_tested_bird_avian_NOAEC = form.getvalue("Species_of_the_tested_bird_avian_NOAEC")
Species_of_the_tested_bird_avian_NOAEL = form.getvalue("Species_of_the_tested_bird_avian_NOAEL")
tw_bird_ld50 = float(form.getvalue("bw_avian_ld50"))
tw_bird_lc50 = float(form.getvalue("bw_avian_lc50"))
tw_bird_NOAEC = float(form.getvalue("bw_avian_NOAEC"))
tw_bird_NOAEL = float(form.getvalue("bw_avian_NOAEL"))
x = form.getvalue("mineau_scaling_factor")
ld50_mamm = form.getvalue("mammalian_ld50")
try:
lc50_mamm = float(form.getvalue("mammalian_lc50"))
except:
lc50_mamm = "N/A"
NOAEC_mamm = form.getvalue("mammalian_NOAEC")
NOAEC_mamm = float(NOAEC_mamm)
NOAEL_mamm = form.getvalue("mammalian_NOAEL")
aw_mamm_sm = form.getvalue("body_weight_of_the_assessed_mammal_small")
aw_mamm_sm = float(aw_mamm_sm)
aw_mamm_md = form.getvalue("body_weight_of_the_assessed_mammal_medium")
aw_mamm_md = float(aw_mamm_md)
aw_mamm_lg = form.getvalue("body_weight_of_the_assessed_mammal_large")
aw_mamm_lg = float(aw_mamm_lg)
tw_mamm = form.getvalue("body_weight_of_the_tested_mammal")
tw_mamm = float(tw_mamm)
# print rate_out
agdrift_obj = agdrift_model.agdrift(
True,
True,
drop_size,
ecosystem_type,
application_method,
boom_height,
orchard_type,
rate_out[0],
distance,
aquatic_type,
calculation_input,
)
# logger.info(type(agdrift_obj.init_avg_dep_foa))
trex_obj = trex2_model.trex2(
"single",
chem_name,
use,
formu_name,
a_i,
Application_type,
seed_treatment_formulation_name,
seed_crop,
seed_crop_v,
r_s,
b_w,
p_i,
den,
h_l,
n_a,
[agdrift_obj.init_avg_dep_foa * i for i in rate_out],
day_out,
ld50_bird,
lc50_bird,
NOAEC_bird,
NOAEL_bird,
aw_bird_sm,
aw_bird_md,
aw_bird_lg,
Species_of_the_tested_bird_avian_ld50,
Species_of_the_tested_bird_avian_lc50,
Species_of_the_tested_bird_avian_NOAEC,
Species_of_the_tested_bird_avian_NOAEL,
tw_bird_ld50,
tw_bird_lc50,
tw_bird_NOAEC,
tw_bird_NOAEL,
x,
ld50_mamm,
lc50_mamm,
NOAEC_mamm,
NOAEL_mamm,
aw_mamm_sm,
aw_mamm_md,
aw_mamm_lg,
tw_mamm,
m_s_r_p,
)
text_file = open("agdrift/agdrift_description.txt", "r")
x = text_file.read()
text_file = open("trex2/trex2_description.txt", "r")
x1 = text_file.read()
templatepath = os.path.dirname(__file__) + "/../templates/"
ChkCookie = self.request.cookies.get("ubercookie")
html = uber_lib.SkinChk(ChkCookie, "AgDrift-TREX Output")
html = html + template.render(
templatepath + "02uberintroblock_wmodellinks.html", {"model": "agdrift", "page": "output"}
)
html = html + template.render(templatepath + "03ubertext_links_left.html", {})
html = html + template.render(
templatepath + "04uberoutput_start.html",
{"model": "agdrift_trex", "model_attributes": "AgDrift-T-Rex Output"},
)
html = html + trex2_tables.timestamp(trex_obj, "")
html = html + agdrift_tables.table_all(agdrift_obj)
# html = html + trex2_tables.timestamp()
html = html + trex2_tables.table_all(trex_obj)[0]
# <H3 class="out_1 collapsible" id="section1"><span></span>User Inputs</H3>
# <div class="out_">
# <table class="out_">
# <tr>
# <th colspan="2">Inputs: Chemical Identity</th>
# </tr>
# <tr>
# <td>Application method</td>
# <td id="app_method_val">%s</td>
# </tr>
# <tr id="Orc_type">
# <td>Orchard type</td>
# <td>%s</td>
# </tr>
# <tr>
# <td>Drop size</td>
# <td>%s</td>
# </tr>
# <tr>
# <td>Ecosystem type</td>
# <td>%s</td>
# </tr>
# </table>
# </div>
# """ % (application_method, orchard_type, drop_size, ecosystem_type)
# html = html + """
# <table style="display:none;">
# <tr>
# <td>distance</td>
# <td id="distance">%s</td>
# </tr>
# <tr>
# <td>deposition</td>
# <td id="deposition">%s</td>
# </tr>
# </table>
# <br>
# <h3 class="out_2 collapsible" id="section2"><span></span>Results</h3>
# <div>
# """%(results[0], results[1])
html = html + template.render(templatepath + "agdrift-output-jqplot_header.html", {})
html = (
html
+ """
</div>
"""
)
html = html + template.render(templatepath + "export.html", {})
html = html + template.render(templatepath + "04uberoutput_end.html", {})
html = html + template.render(templatepath + "06uberfooter.html", {"links": ""})
self.response.out.write(html)