def post(self):        
        form = cgi.FieldStorage()   
        chem_name = form.getvalue('chemical_name')
        use = form.getvalue('Use')
        formu_name = form.getvalue('Formulated_product_name')
        a_i = form.getvalue('percent_ai')
        a_i = float(a_i)/100
        Application_type = form.getvalue('Application_type')
        seed_crop = float(form.getvalue('seed_crop'))
        p_i = form.getvalue('percent_incorporated')
        p_i = float(p_i)/100
        seed_treatment_formulation_name = form.getvalue('seed_treatment_formulation_name')
        den = form.getvalue('density_of_product')
        den = float(den)
        m_s_r_p = form.getvalue('maximum_seedling_rate_per_use')
        m_s_r_p = float(m_s_r_p)
        r_s = form.getvalue('row_sp') 
        r_s=float(r_s)
        b_w = form.getvalue('bandwidth')   #convert to ft
        b_w = float(b_w)/12



        if Application_type=='Seed Treatment':
           a_r_p=seed_crop       #coefficient used to estimate initial conc.
           n_a = 1
           rate_out = []
           day_out = []
           rate_out.append(float(form.getvalue('rate_seed')))
           day_out.append(float(form.getvalue('day_seed')))

        else:
           a_r_p=0
           n_a = float(form.getvalue('noa'))
           rate_out = []
           day_out = []
           for i in range(int(n_a)):
               j=i+1
               rate_temp = form.getvalue('rate'+str(j))
               rate_out.append(float(rate_temp))
               day_temp = float(form.getvalue('day'+str(j)))
               day_out.append(day_temp)  

        h_l = form.getvalue('Foliar_dissipation_half_life')
        ld50_bird = form.getvalue('avian_ld50')
        lc50_bird = form.getvalue('avian_lc50')
        NOAEC_bird = form.getvalue('avian_NOAEC')
        NOAEC_bird = float(NOAEC_bird)
        NOAEL_bird = form.getvalue('avian_NOAEL')
        NOAEL_bird = float(NOAEL_bird)
        
        Species_of_the_tested_bird = form.getvalue('Species_of_the_tested_bird')
        aw_bird_sm = form.getvalue('body_weight_of_the_assessed_bird_small')
        aw_bird_sm = float(aw_bird_sm)  
        aw_bird_md = form.getvalue('body_weight_of_the_assessed_bird_medium')
        aw_bird_md = float(aw_bird_md) 
        aw_bird_lg = form.getvalue('body_weight_of_the_assessed_bird_large')
        aw_bird_lg = float(aw_bird_lg)       
        if Species_of_the_tested_bird == 'Bobwhite quail':
            tw_bird = form.getvalue('bw_quail')
        elif  Species_of_the_tested_bird == 'Mallard duck':
            tw_bird = form.getvalue('bw_duck')  
        else:
            tw_bird = form.getvalue('bwb_other')      

        tw_bird = float(tw_bird)        
        x = form.getvalue('mineau_scaling_factor')
        ld50_mamm = form.getvalue('mammalian_ld50')
        lc50_mamm = form.getvalue('mammalian_lc50')
        lc50_mamm=float(lc50_mamm)        
        NOAEC_mamm = form.getvalue('mammalian_NOAEC')
        NOAEC_mamm = float(NOAEC_mamm)
        NOAEL_mamm = form.getvalue('mammalian_NOAEL')

        aw_mamm_sm = form.getvalue('body_weight_of_the_assessed_mammal_small')
        aw_mamm_sm = float(aw_mamm_sm)  
        aw_mamm_md = form.getvalue('body_weight_of_the_assessed_mammal_medium')
        aw_mamm_md = float(aw_mamm_md) 
        aw_mamm_lg = form.getvalue('body_weight_of_the_assessed_mammal_large')
        aw_mamm_lg = float(aw_mamm_lg)               
        tw_mamm = form.getvalue('body_weight_of_the_tested_mammal')
        tw_mamm = float(tw_mamm) 

        text_file = open('trex2/trex2_description.txt','r')
        x1 = text_file.read()
        templatepath = os.path.dirname(__file__) + '/../templates/'
        html = template.render(templatepath + '01uberheader.html', {'title':'Ubertool'})        
        html = html + template.render(templatepath + '02uberintroblock_wmodellinks.html',  {'model':'trex2','page':'output'})
        html = html + template.render (templatepath + '03ubertext_links_left.html', {})                               
        html = html + template.render(templatepath + '04uberoutput_start.html', {
                'model':'trex2', 
                'model_attributes':'T-Rex 1.5.1 Output'})

        trex_obj = trex2_model.trex2(chem_name, use, formu_name, a_i, Application_type, r_s, b_w, a_r_p, p_i, den, h_l, n_a, rate_out, day_out,
                      ld50_bird, lc50_bird, NOAEC_bird, NOAEL_bird, aw_bird_sm, aw_bird_md, aw_bird_lg, Species_of_the_tested_bird, 
                      tw_bird, x, ld50_mamm, lc50_mamm, NOAEC_mamm, NOAEL_mamm, aw_mamm_sm, aw_mamm_md, aw_mamm_lg, tw_mamm,
                      m_s_r_p)

        html = html + trex2_tables.table_all(trex_obj)[0]
        html = html + template.render(templatepath + 'export.html', {})
        html = html + template.render(templatepath + '04uberoutput_end.html', {'sub_title': ''})
        html = html + template.render(templatepath + '06uberfooter.html', {'links': ''})
        self.response.out.write(html)
Exemple #2
0
    def post(self):        
        form = cgi.FieldStorage()   
        chem_name = form.getvalue('chemical_name')
        use = form.getvalue('Use')
        formu_name = form.getvalue('Formulated_product_name')
        a_i = form.getvalue('percent_ai')
        a_i = float(a_i)/100
        Application_type = form.getvalue('Application_type')
        seed_crop = float(form.getvalue('seed_crop'))
        seed_crop_v = form.getvalue('seed_crop_v')
        p_i = form.getvalue('percent_incorporated')
        p_i = float(p_i)/100
        seed_treatment_formulation_name = form.getvalue('seed_treatment_formulation_name')
        den = form.getvalue('density_of_product')
        den = float(den)
        m_s_r_p = form.getvalue('maximum_seedling_rate_per_use')
        m_s_r_p = float(m_s_r_p)
        r_s = form.getvalue('row_sp') 
        r_s=float(r_s)
        b_w = form.getvalue('bandwidth')   #convert to ft
        b_w = float(b_w)/12

        if Application_type=='Seed Treatment':
           n_a = 1
        else:
           n_a = float(form.getvalue('noa'))
        
        rate_out = []
        day_out = []
        for i in range(int(n_a)):
           j=i+1
           rate_temp = form.getvalue('rate'+str(j))
           rate_out.append(float(rate_temp))
           day_temp = float(form.getvalue('day'+str(j)))
           day_out.append(day_temp)  

        h_l = form.getvalue('Foliar_dissipation_half_life')
        ld50_bird = form.getvalue('avian_ld50')
        lc50_bird = form.getvalue('avian_lc50')
        NOAEC_bird = float(form.getvalue('avian_NOAEC'))
        try:
            NOAEL_bird = float(form.getvalue('avian_NOAEL'))
        except:
            NOAEL_bird = 'N/A'
        aw_bird_sm = form.getvalue('body_weight_of_the_assessed_bird_small')
        aw_bird_sm = float(aw_bird_sm)  
        aw_bird_md = form.getvalue('body_weight_of_the_assessed_bird_medium')
        aw_bird_md = float(aw_bird_md) 
        aw_bird_lg = form.getvalue('body_weight_of_the_assessed_bird_large')
        aw_bird_lg = float(aw_bird_lg)       
        
        Species_of_the_tested_bird_avian_ld50 = form.getvalue('Species_of_the_tested_bird_avian_ld50')
        Species_of_the_tested_bird_avian_lc50 = form.getvalue('Species_of_the_tested_bird_avian_lc50')
        Species_of_the_tested_bird_avian_NOAEC = form.getvalue('Species_of_the_tested_bird_avian_NOAEC')
        Species_of_the_tested_bird_avian_NOAEL = form.getvalue('Species_of_the_tested_bird_avian_NOAEL')

        tw_bird_ld50 = float(form.getvalue('bw_avian_ld50'))
        tw_bird_lc50 = float(form.getvalue('bw_avian_lc50'))
        tw_bird_NOAEC = float(form.getvalue('bw_avian_NOAEC'))
        tw_bird_NOAEL = float(form.getvalue('bw_avian_NOAEL'))

        x = form.getvalue('mineau_scaling_factor')
        ld50_mamm = form.getvalue('mammalian_ld50')
        try:
            lc50_mamm = float(form.getvalue('mammalian_lc50'))
        except:
            lc50_mamm = 'N/A'
        NOAEC_mamm = form.getvalue('mammalian_NOAEC')
        NOAEC_mamm = float(NOAEC_mamm)
        NOAEL_mamm = form.getvalue('mammalian_NOAEL')

        aw_mamm_sm = form.getvalue('body_weight_of_the_assessed_mammal_small')
        aw_mamm_sm = float(aw_mamm_sm)  
        aw_mamm_md = form.getvalue('body_weight_of_the_assessed_mammal_medium')
        aw_mamm_md = float(aw_mamm_md) 
        aw_mamm_lg = form.getvalue('body_weight_of_the_assessed_mammal_large')
        aw_mamm_lg = float(aw_mamm_lg)               
        tw_mamm = form.getvalue('body_weight_of_the_tested_mammal')
        tw_mamm = float(tw_mamm) 

        text_file = open('trex2/trex2_description.txt','r')
        x1 = text_file.read()
        templatepath = os.path.dirname(__file__) + '/../templates/'
        ChkCookie = self.request.cookies.get("ubercookie")
        html = uber_lib.SkinChk(ChkCookie, "TREX 1.5.2 Output")
        html = html + template.render(templatepath + '02uberintroblock_wmodellinks.html',  {'model':'trex2','page':'output'})
        html = html + template.render (templatepath + '03ubertext_links_left.html', {})                               
        html = html + template.render(templatepath + '04uberoutput_start.html', {
                'model':'trex2', 
                'model_attributes':'T-Rex 1.5.2 Output'})

        trex2_obj = trex2_model.trex2("single", chem_name, use, formu_name, a_i, Application_type, seed_treatment_formulation_name, seed_crop, seed_crop_v, r_s, b_w, p_i, den, h_l, n_a, rate_out, day_out,
                      ld50_bird, lc50_bird, NOAEC_bird, NOAEL_bird, aw_bird_sm, aw_bird_md, aw_bird_lg, 
                      Species_of_the_tested_bird_avian_ld50, Species_of_the_tested_bird_avian_lc50, Species_of_the_tested_bird_avian_NOAEC, Species_of_the_tested_bird_avian_NOAEL,
                      tw_bird_ld50, tw_bird_lc50, tw_bird_NOAEC, tw_bird_NOAEL, x, ld50_mamm, lc50_mamm, NOAEC_mamm, NOAEL_mamm, aw_mamm_sm, aw_mamm_md, aw_mamm_lg, tw_mamm,
                      m_s_r_p)

        html = html + trex2_tables.timestamp(trex2_obj)
        html = html + trex2_tables.table_all(trex2_obj)[0]
        html = html + template.render(templatepath + 'export.html', {})
        html = html + template.render(templatepath + '04uberoutput_end.html', {'sub_title': ''})
        html = html + template.render(templatepath + '06uberfooter.html', {'links': ''})
        # logger.info(trex2_obj.__dict__)
        rest_funcs.save_dic(html, trex2_obj.__dict__, "trex2", "single")
        self.response.out.write(html)
    def post(self):
        form = cgi.FieldStorage()
        # print form
        # args={}
        # for keys in form:
        #    args[keys]=form.getvalue(keys)
        drop_size = form.getvalue("drop_size")
        ecosystem_type = form.getvalue("ecosystem_type")
        application_method = form.getvalue("application_method")
        boom_height = form.getvalue("boom_height")
        orchard_type = form.getvalue("orchard_type")
        # application_rate = form.getvalue('application_rate')
        aquatic_type = form.getvalue("aquatic_type")
        distance = form.getvalue("distance")
        calculation_input = form.getvalue("calculation_input")
        # init_avg_dep_foa = form.getvalue('init_avg_dep_foa')
        # avg_depo_gha = form.getvalue('avg_depo_gha')
        # avg_depo_lbac = form.getvalue('avg_depo_lbac')
        # deposition_ngL = form.getvalue('deposition_ngL')
        # deposition_mgcm = form.getvalue('deposition_mgcm')
        # nasae = form.getvalue('nasae')
        # y = form.getvalue('y')
        # x = form.getvalue('x')
        # express_y = form.getvalue('express_y')

        chem_name = form.getvalue("chemical_name")
        use = form.getvalue("Use")
        formu_name = form.getvalue("Formulated_product_name")
        a_i = form.getvalue("percent_ai")
        print a_i
        a_i = float(a_i) / 100
        Application_type = form.getvalue("Application_type")
        seed_crop = float(form.getvalue("seed_crop"))
        seed_crop_v = form.getvalue("seed_crop_v")
        p_i = form.getvalue("percent_incorporated")
        p_i = float(p_i) / 100
        seed_treatment_formulation_name = form.getvalue("seed_treatment_formulation_name")
        den = form.getvalue("density_of_product")
        den = float(den)
        m_s_r_p = form.getvalue("maximum_seedling_rate_per_use")
        m_s_r_p = float(m_s_r_p)
        r_s = form.getvalue("row_sp")
        r_s = float(r_s)
        b_w = form.getvalue("bandwidth")  # convert to ft
        b_w = float(b_w) / 12

        if Application_type == "Seed Treatment":
            n_a = 1
        else:
            n_a = float(form.getvalue("noa"))

        rate_out = []
        day_out = [0]
        for i in range(int(n_a)):
            j = i + 1
            rate_temp = form.getvalue("rate" + str(j))
            rate_out.append(float(rate_temp))
            # day_temp = float(form.getvalue('day'+str(j)))
            # day_out.append(day_temp)

        h_l = form.getvalue("Foliar_dissipation_half_life")
        ld50_bird = form.getvalue("avian_ld50")
        lc50_bird = form.getvalue("avian_lc50")
        NOAEC_bird = float(form.getvalue("avian_NOAEC"))
        try:
            NOAEL_bird = float(form.getvalue("avian_NOAEL"))
        except:
            NOAEL_bird = "N/A"
        aw_bird_sm = form.getvalue("body_weight_of_the_assessed_bird_small")
        aw_bird_sm = float(aw_bird_sm)
        aw_bird_md = form.getvalue("body_weight_of_the_assessed_bird_medium")
        aw_bird_md = float(aw_bird_md)
        aw_bird_lg = form.getvalue("body_weight_of_the_assessed_bird_large")
        aw_bird_lg = float(aw_bird_lg)

        Species_of_the_tested_bird_avian_ld50 = form.getvalue("Species_of_the_tested_bird_avian_ld50")
        Species_of_the_tested_bird_avian_lc50 = form.getvalue("Species_of_the_tested_bird_avian_lc50")
        Species_of_the_tested_bird_avian_NOAEC = form.getvalue("Species_of_the_tested_bird_avian_NOAEC")
        Species_of_the_tested_bird_avian_NOAEL = form.getvalue("Species_of_the_tested_bird_avian_NOAEL")

        tw_bird_ld50 = float(form.getvalue("bw_avian_ld50"))
        tw_bird_lc50 = float(form.getvalue("bw_avian_lc50"))
        tw_bird_NOAEC = float(form.getvalue("bw_avian_NOAEC"))
        tw_bird_NOAEL = float(form.getvalue("bw_avian_NOAEL"))

        x = form.getvalue("mineau_scaling_factor")
        ld50_mamm = form.getvalue("mammalian_ld50")
        try:
            lc50_mamm = float(form.getvalue("mammalian_lc50"))
        except:
            lc50_mamm = "N/A"
        NOAEC_mamm = form.getvalue("mammalian_NOAEC")
        NOAEC_mamm = float(NOAEC_mamm)
        NOAEL_mamm = form.getvalue("mammalian_NOAEL")

        aw_mamm_sm = form.getvalue("body_weight_of_the_assessed_mammal_small")
        aw_mamm_sm = float(aw_mamm_sm)
        aw_mamm_md = form.getvalue("body_weight_of_the_assessed_mammal_medium")
        aw_mamm_md = float(aw_mamm_md)
        aw_mamm_lg = form.getvalue("body_weight_of_the_assessed_mammal_large")
        aw_mamm_lg = float(aw_mamm_lg)
        tw_mamm = form.getvalue("body_weight_of_the_tested_mammal")
        tw_mamm = float(tw_mamm)
        # print rate_out
        agdrift_obj = agdrift_model.agdrift(
            True,
            True,
            drop_size,
            ecosystem_type,
            application_method,
            boom_height,
            orchard_type,
            rate_out[0],
            distance,
            aquatic_type,
            calculation_input,
        )
        # logger.info(type(agdrift_obj.init_avg_dep_foa))

        trex_obj = trex2_model.trex2(
            "single",
            chem_name,
            use,
            formu_name,
            a_i,
            Application_type,
            seed_treatment_formulation_name,
            seed_crop,
            seed_crop_v,
            r_s,
            b_w,
            p_i,
            den,
            h_l,
            n_a,
            [agdrift_obj.init_avg_dep_foa * i for i in rate_out],
            day_out,
            ld50_bird,
            lc50_bird,
            NOAEC_bird,
            NOAEL_bird,
            aw_bird_sm,
            aw_bird_md,
            aw_bird_lg,
            Species_of_the_tested_bird_avian_ld50,
            Species_of_the_tested_bird_avian_lc50,
            Species_of_the_tested_bird_avian_NOAEC,
            Species_of_the_tested_bird_avian_NOAEL,
            tw_bird_ld50,
            tw_bird_lc50,
            tw_bird_NOAEC,
            tw_bird_NOAEL,
            x,
            ld50_mamm,
            lc50_mamm,
            NOAEC_mamm,
            NOAEL_mamm,
            aw_mamm_sm,
            aw_mamm_md,
            aw_mamm_lg,
            tw_mamm,
            m_s_r_p,
        )
        text_file = open("agdrift/agdrift_description.txt", "r")
        x = text_file.read()
        text_file = open("trex2/trex2_description.txt", "r")
        x1 = text_file.read()
        templatepath = os.path.dirname(__file__) + "/../templates/"
        ChkCookie = self.request.cookies.get("ubercookie")
        html = uber_lib.SkinChk(ChkCookie, "AgDrift-TREX Output")
        html = html + template.render(
            templatepath + "02uberintroblock_wmodellinks.html", {"model": "agdrift", "page": "output"}
        )
        html = html + template.render(templatepath + "03ubertext_links_left.html", {})
        html = html + template.render(
            templatepath + "04uberoutput_start.html",
            {"model": "agdrift_trex", "model_attributes": "AgDrift-T-Rex Output"},
        )

        html = html + trex2_tables.timestamp(trex_obj, "")
        html = html + agdrift_tables.table_all(agdrift_obj)
        # html = html + trex2_tables.timestamp()
        html = html + trex2_tables.table_all(trex_obj)[0]

        # <H3 class="out_1 collapsible" id="section1"><span></span>User Inputs</H3>
        # <div class="out_">
        #     <table class="out_">
        #         <tr>
        #             <th colspan="2">Inputs: Chemical Identity</th>
        #         </tr>
        #         <tr>
        #             <td>Application method</td>
        #             <td id="app_method_val">%s</td>
        #         </tr>
        #         <tr id="Orc_type">
        #             <td>Orchard type</td>
        #             <td>%s</td>
        #         </tr>
        #         <tr>
        #             <td>Drop size</td>
        #             <td>%s</td>
        #         </tr>
        #         <tr>
        #             <td>Ecosystem type</td>
        #             <td>%s</td>
        #         </tr>
        #     </table>
        # </div>
        # """ % (application_method, orchard_type, drop_size, ecosystem_type)
        # html = html +  """
        # <table style="display:none;">
        #     <tr>
        #         <td>distance</td>
        #         <td id="distance">%s</td>
        #     </tr>
        #     <tr>
        #         <td>deposition</td>
        #         <td id="deposition">%s</td>
        #     </tr>
        # </table>
        # <br>
        # <h3 class="out_2 collapsible" id="section2"><span></span>Results</h3>
        # <div>
        # """%(results[0], results[1])

        html = html + template.render(templatepath + "agdrift-output-jqplot_header.html", {})

        html = (
            html
            + """
        </div>
        """
        )
        html = html + template.render(templatepath + "export.html", {})
        html = html + template.render(templatepath + "04uberoutput_end.html", {})
        html = html + template.render(templatepath + "06uberfooter.html", {"links": ""})
        self.response.out.write(html)