def freq_submit(job):
"""
Sends job for frequency analysis of type 'job.freqtype'
"""
os.chdir(job.indir)
if job.freqopt == 'aoforce':
try:
turbogo_helpers.add_or_modify_control(['$les all 2', '$maxcor 2056'])
except turbogo_helpers.ControlFileError:
logging.warn("Error modifying control file. Attempting to continue.")
job.job.jobtype = job.freqopt
script = submit_script_prepare(job.job)
try:
jobid = submit_job(job.job, script)
except Exception as e:
logging.warning("Error {} submiting freq job {}".format(e, job.indir))
return -99
logging.info("Job {} submitted for {} analysis"
.format(job.name, job.freqopt))
os.chdir(TOPDIR)
return jobid
def control_edit(job, filename="control"):
"""Edit the control files to include or remove the required lines"""
logging.debug("Editing control file to add additional info.")
turbogo_helpers.remove_control(job.control_remove, filename)
turbogo_helpers.add_or_modify_control(job.control_add, filename)
