def setup_main_panel(self):
"""
Lays Out Main Panel. Binds some functions to presenter.
:return: None
"""
# Create Status Bar
self.CreateStatusBar(7)
self.SetStatusWidths([-1, 300, 200, 200, 250, 150, 130])
# Sizers to develop layout
# s1 = (min(self.displaysize[0], 1851), self.displaysize[1])
# s2 = (550, self.displaysize[1])
splitterwindow = wx.SplitterWindow(self,
-1,
style=wx.SP_3D | wx.SP_BORDER)
splitterwindow2 = wx.SplitterWindow(splitterwindow,
-1,
style=wx.SP_3D | wx.SP_BORDER)
panelp = wx.Panel(splitterwindow2, -1)
panel = scrolled.ScrolledPanel(splitterwindow2,
-1) # wx.Panel(splitterwindow2, -1)
splitterwindow2.SplitVertically(panelp,
panel,
sashPosition=-250 -
self.config.imflag * 20)
splitterwindow2.SetMinimumPaneSize(175)
splitterwindow.SetMinimumPaneSize(175)
# splitterwindow.SetMinSize((0,0))
# splitterwindow2.SetMinSize((0,0))
file_drop_target = MyFileDropTarget(self)
splitterwindow.SetDropTarget(file_drop_target)
# .................................
#
# Layout the Plots
#
# ...................................
# Tabbed view of plots
if self.tabbed == 1:
figsize = (6, 5)
plotwindow = wx.Notebook(splitterwindow)
splitterwindow.SplitVertically(plotwindow,
splitterwindow2,
sashPosition=-550)
tab1 = wx.Panel(plotwindow)
tab2 = wx.Panel(plotwindow)
tab3 = wx.Panel(plotwindow)
tab4 = wx.Panel(plotwindow)
tab5 = wx.Panel(plotwindow)
tab6 = wx.Panel(plotwindow)
self.plot1 = plot1d.Plot1d(tab1, smash=1, figsize=figsize)
self.plot2 = plot1d.Plot1d(tab2, integrate=1, figsize=figsize)
self.plot3 = plot2d.Plot2d(tab3, figsize=figsize)
self.plot4 = plot1d.Plot1d(tab4, figsize=figsize)
self.plot5 = plot2d.Plot2d(tab5, figsize=figsize)
self.plot6 = plot1d.Plot1d(tab6, figsize=figsize)
miscwindows.setup_tab_box(tab1, self.plot1)
miscwindows.setup_tab_box(tab2, self.plot2)
miscwindows.setup_tab_box(tab3, self.plot3)
miscwindows.setup_tab_box(tab4, self.plot4)
miscwindows.setup_tab_box(tab5, self.plot5)
miscwindows.setup_tab_box(tab6, self.plot6)
if self.config.imflag == 1:
tab1im = wx.Panel(plotwindow)
tab1fit = wx.Panel(plotwindow)
tab2ccs = wx.Panel(plotwindow)
tab3color = wx.Panel(plotwindow)
tab5mccs = wx.Panel(plotwindow)
tab5ccsz = wx.Panel(plotwindow)
tab9 = wx.Panel(plotwindow)
tab10 = wx.Panel(plotwindow)
self.plot1im = plot2d.Plot2d(tab1im, figsize=figsize)
self.plot1fit = plot2d.Plot2d(tab1fit, figsize=figsize)
self.plot2ccs = plot1d.Plot1d(tab2ccs, figsize=figsize)
self.plot5mccs = plot2d.Plot2d(tab5mccs, figsize=figsize)
self.plot5ccsz = plot2d.Plot2d(tab5ccsz, figsize=figsize)
self.plot3color = ColorPlot.ColorPlot2D(tab3color,
figsize=figsize)
self.plot9 = plot3d.CubePlot(tab9, figsize=figsize)
self.plot10 = plot3d.CubePlot(tab10, figsize=figsize)
miscwindows.setup_tab_box(tab1im, self.plot1im)
miscwindows.setup_tab_box(tab1fit, self.plot1fit)
miscwindows.setup_tab_box(tab2ccs, self.plot2ccs)
miscwindows.setup_tab_box(tab3color, self.plot3color)
miscwindows.setup_tab_box(tab5mccs, self.plot5mccs)
miscwindows.setup_tab_box(tab5ccsz, self.plot5ccsz)
miscwindows.setup_tab_box(tab9, self.plot9)
miscwindows.setup_tab_box(tab10, self.plot10)
plotwindow.AddPage(tab1, "MS Data v. Fit")
if self.config.imflag == 1:
plotwindow.AddPage(tab1im, "IM-MS Data")
plotwindow.AddPage(tab1fit, "IM-MS Fit")
plotwindow.AddPage(tab3color, "IM-MS Charges")
plotwindow.AddPage(tab9, "m/z Cube")
plotwindow.AddPage(tab3, "m/z Grid")
plotwindow.AddPage(tab2, "Mass Distribution")
if self.config.imflag == 1:
plotwindow.AddPage(tab2ccs, "CCS Distribution")
plotwindow.AddPage(tab4, "Individual Peaks")
plotwindow.AddPage(tab5, "Mass vs. Charge")
if self.config.imflag == 1:
plotwindow.AddPage(tab5mccs, "Mass vs. CCS ")
plotwindow.AddPage(tab5ccsz, "CCS vs. Charge")
plotwindow.AddPage(tab10, "Mass Cube")
plotwindow.AddPage(tab6, "Bar Chart")
# Scrolled panel view of plots
else:
# TODO: Line up plots on left hand side so that they share an m/z axis
plotwindow = scrolled.ScrolledPanel(splitterwindow)
splitterwindow.SplitVertically(plotwindow,
splitterwindow2,
sashPosition=-550)
sizerplot = wx.GridBagSizer()
figsize = self.config.figsize
self.plot1 = plot1d.Plot1d(plotwindow, smash=1, figsize=figsize)
self.plot2 = plot1d.Plot1d(plotwindow,
integrate=1,
figsize=figsize)
self.plot3 = plot2d.Plot2d(plotwindow, figsize=figsize)
self.plot4 = plot1d.Plot1d(plotwindow, figsize=figsize)
self.plot5 = plot2d.Plot2d(plotwindow, figsize=figsize)
self.plot6 = plot1d.Plot1d(plotwindow, figsize=figsize)
if self.config.imflag == 1:
self.plot1im = plot2d.Plot2d(plotwindow, figsize=figsize)
self.plot1fit = plot2d.Plot2d(plotwindow, figsize=figsize)
self.plot2ccs = plot1d.Plot1d(plotwindow, figsize=figsize)
self.plot5mccs = plot2d.Plot2d(plotwindow, figsize=figsize)
self.plot5ccsz = plot2d.Plot2d(plotwindow, figsize=figsize)
self.plot3color = ColorPlot.ColorPlot2D(plotwindow,
figsize=figsize)
self.plot9 = plot3d.CubePlot(plotwindow, figsize=figsize)
self.plot10 = plot3d.CubePlot(plotwindow, figsize=figsize)
if self.config.imflag == 0:
sizerplot.Add(self.plot1, (0, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot2, (0, 1), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot3, (1, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot4, (1, 1), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot5, (2, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot6, (2, 1), span=(1, 1), flag=wx.EXPAND)
else:
sizerplot.Add(self.plot1, (0, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot1im, (0, 1),
span=(1, 1),
flag=wx.EXPAND)
sizerplot.Add(self.plot1fit, (1, 1),
span=(1, 1),
flag=wx.EXPAND)
sizerplot.Add(self.plot3color, (1, 0),
span=(1, 1),
flag=wx.EXPAND)
sizerplot.Add(self.plot2, (2, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot2ccs, (3, 0),
span=(1, 1),
flag=wx.EXPAND)
sizerplot.Add(self.plot3, (2, 1), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot4, (4, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot5, (3, 1), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot5mccs, (4, 1),
span=(1, 1),
flag=wx.EXPAND)
sizerplot.Add(self.plot5ccsz, (5, 1),
span=(1, 1),
flag=wx.EXPAND)
sizerplot.Add(self.plot6, (5, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot9, (6, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot10, (6, 1), span=(1, 1), flag=wx.EXPAND)
# plotwindow.SetScrollbars(1, 1,1,1)
if self.system == "Linux":
plotwindow.SetSizer(sizerplot)
sizerplot.Fit(self)
else:
plotwindow.SetSizerAndFit(sizerplot)
plotwindow.SetupScrolling()
self.plots = [
self.plot1, self.plot2, self.plot3, self.plot4, self.plot5,
self.plot6
]
if self.config.imflag == 1:
self.plots = self.plots + [
self.plot1im, self.plot1fit, self.plot2ccs, self.plot5mccs,
self.plot5ccsz, self.plot3color, self.plot9, self.plot10
]
self.plotnames = [
"Figure1", "Figure2", "Figure3", "Figure4", "Figure5", "Figure6"
]
if self.config.imflag == 1:
self.plotname = self.plotnames + [
"Figure1im", "Figure1fit", "Figure2ccs", "Figure3color",
"Figure5ccsz", "Figure5massccs", "mzCube", "massCube"
]
# ...........................
#
# Sizer for Peaks
#
# ...........................
sizerpeaks = wx.BoxSizer(wx.VERTICAL)
self.peakpanel = peaklistsort.PeakListCtrlPanel(panelp)
self.Bind(self.peakpanel.EVT_DELETE_SELECTION_2, self.pres.on_delete,
self.peakpanel)
self.Bind(self.peakpanel.EVT_CHARGE_STATE, self.pres.on_charge_states,
self.peakpanel)
self.Bind(self.peakpanel.EVT_DIFFERENCES, self.pres.on_differences,
self.peakpanel)
sizerpeaks.Add(self.peakpanel, 0, wx.EXPAND)
panelp.SetSizer(sizerpeaks)
sizerpeaks.Fit(self)
# ..........................
#
# Setup Control Panel
#
# .............................
sizercontrols = wx.BoxSizer(wx.VERTICAL)
self.controls = ud_controls.main_controls(self, self.config, self.pres,
panel, self.icon_path)
sizercontrols.Add(self.controls, 1, wx.EXPAND)
panel.SetSizer(sizercontrols)
sizercontrols.Fit(self)
# panel.SetAutoLayout(1)
# panel.SetupScrolling(scroll_x=False, scroll_y=True)
if self.system == "Linux" and self.tabbed != 1:
sizerplot.Fit(splitterwindow)
sizer = wx.BoxSizer(wx.HORIZONTAL)
sizer.Add(splitterwindow, 1, wx.EXPAND)
# Set everything up
self.SetSizer(sizer)
sizer.Fit(self)
pass
def __init__(self,
parent,
title,
config=None,
iconfile="logo.ico",
*args,
**kwargs):
mainwindow_base.MainwindowBase.__init__(self, parent, title, config,
iconfile)
# wx.Frame.__init__(self, None, title=title) # ,size=(200,-1))
self.pres = parent
if config is None:
self.config = self.pres.eng.config
else:
self.config = config
self.icon_path = iconfile
self.datachoices = {
0: "Raw Data",
1: "Processed Data",
2: "Zero Charge Mass Spectrum"
}
self.extractchoices = {
0: "Height",
1: "Local Max",
2: "Area",
3: "Center of Mass",
4: "Local Max Position"
}
self.extractlabels = {
0: "Intensity",
1: "Intensity",
2: "Area",
3: "Mass",
4: "Mass"
}
self.CreateStatusBar(7)
self.SetStatusWidths([-1, 200, 120, 200, 230, 250, 130])
pub.subscribe(self.on_motion, 'newxy')
pub.subscribe(self.pres.on_selection, 'scans_selected')
self.menu = meta_menu(self, self.config, self.pres, type="Chrom")
self.SetMenuBar(self.menu.menuBar)
self.panel = wx.Panel(self)
self.panel.SetDropTarget(ChromDropTarget(self))
self.mainsizer = wx.BoxSizer(wx.HORIZONTAL)
self.leftsizer = wx.BoxSizer(wx.VERTICAL)
labelfont = wx.Font(16, wx.DECORATIVE, wx.ITALIC, wx.NORMAL)
self.ctlsizer = wx.BoxSizer(wx.VERTICAL)
label = wx.StaticText(self.panel,
label="Chromatogram Parsing Tools",
size=(300, 30))
label.SetFont(labelfont)
self.ctlsizer.Add(label, 0)
self.manual_add_button = wx.Button(self.panel,
label="Add From Manual Selection")
self.Bind(wx.EVT_BUTTON, self.pres.on_manual_add,
self.manual_add_button)
self.ctlsizer.Add(self.manual_add_button)
tsizer0 = wx.BoxSizer(wx.HORIZONTAL)
self.cpeaksbutton = wx.Button(self.panel,
label="Find Chrom. Peaks Near Width:")
self.Bind(wx.EVT_BUTTON, self.pres.on_chrom_peaks, self.cpeaksbutton)
tsizer0.Add(self.cpeaksbutton)
self.ctlcpeaks_param1 = wx.TextCtrl(self.panel,
value=str(
self.config.chrom_peak_width),
size=(50, 20))
tsizer0.Add(self.ctlcpeaks_param1, 0, wx.ALIGN_CENTER_VERTICAL)
tsizer0.Add(wx.StaticText(self.panel, label="min"), 0,
wx.ALIGN_CENTER_VERTICAL)
self.ctlsizer.Add(tsizer0)
tsizer1 = wx.BoxSizer(wx.HORIZONTAL)
self.timepartbutton = wx.Button(self.panel,
label="Partition in Time Steps of:")
self.Bind(wx.EVT_BUTTON, self.pres.on_timepart, self.timepartbutton)
tsizer1.Add(self.timepartbutton)
self.ctlmin = wx.TextCtrl(self.panel,
value=str(self.config.time_window),
size=(50, 20))
tsizer1.Add(self.ctlmin, 0, wx.ALIGN_CENTER_VERTICAL)
tsizer1.Add(wx.StaticText(self.panel, label="min"), 0,
wx.ALIGN_CENTER_VERTICAL)
self.ctlsizer.Add(tsizer1)
tsizer2 = wx.BoxSizer(wx.HORIZONTAL)
self.swbutton = wx.Button(self.panel, label="Sliding Window (min):")
self.Bind(wx.EVT_BUTTON, self.pres.on_sliding_window, self.swbutton)
tsizer2.Add(self.swbutton)
self.ctlswwin = wx.TextCtrl(self.panel,
value=str(self.config.sw_time_window),
size=(50, 20))
tsizer2.Add(self.ctlswwin, 0, wx.ALIGN_CENTER_VERTICAL)
tsizer2.Add(wx.StaticText(self.panel, label="Offset (#):"), 0,
wx.ALIGN_CENTER_VERTICAL)
self.ctlswoffset = wx.TextCtrl(self.panel,
value=str(
int(self.config.sw_scan_offset)),
size=(50, 20))
tsizer2.Add(self.ctlswoffset, 0, wx.ALIGN_CENTER_VERTICAL)
tsizer2.Add(wx.StaticText(self.panel, label="min"), 0,
wx.ALIGN_CENTER_VERTICAL)
self.ctlsizer.Add(tsizer2)
tsizer2 = wx.BoxSizer(wx.HORIZONTAL)
tsizer2.Add(wx.StaticText(self.panel, label="Time Start:"), 0,
wx.ALIGN_CENTER_VERTICAL)
self.ctltmin = wx.TextCtrl(self.panel,
value=str(self.config.time_start),
size=(50, 20))
tsizer2.Add(self.ctltmin, 0, wx.ALIGN_CENTER_VERTICAL)
tsizer2.Add(wx.StaticText(self.panel, label="End:"), 0,
wx.ALIGN_CENTER_VERTICAL)
self.ctltmax = wx.TextCtrl(self.panel,
value=str(self.config.time_end),
size=(50, 20))
tsizer2.Add(self.ctltmax, 0, wx.ALIGN_CENTER_VERTICAL)
# tsizer2.Add(wx.StaticText(self.panel, label="min. Offset:"), 0, wx.ALIGN_CENTER_VERTICAL)
self.ctlsizer.Add(tsizer2)
self.clear_button = wx.Button(self.panel, label="Clear All Spectra")
self.Bind(wx.EVT_BUTTON, self.pres.on_clear_spectra, self.clear_button)
self.ctlsizer.Add(self.clear_button)
label = wx.StaticText(self.panel,
label="Parsed Spectra",
size=(300, 30))
label.SetFont(labelfont)
self.ctlsizer.Add(label, 0)
self.leftsizer.Add(self.ctlsizer)
self.ypanel = ListCtrlPanel(self.panel, self.pres, size=(300, 300))
self.leftsizer.Add(self.ypanel, 1, wx.EXPAND)
self.ctlsizer2 = wx.BoxSizer(wx.VERTICAL)
label = wx.StaticText(self.panel,
label="UniDec of Manual Selection",
size=(300, 30))
label.SetFont(labelfont)
self.ctlsizer2.Add(label, 0)
self.run_ud_button = wx.Button(self.panel,
label="Run UniDec On Selection")
self.Bind(wx.EVT_BUTTON, self.pres.on_unidec_run, self.run_ud_button)
self.ctlsizer2.Add(self.run_ud_button)
self.pick_peaks_button_individual = wx.Button(
self.panel, label="Pick Peaks On Selection")
self.Bind(wx.EVT_BUTTON, self.pres.on_pick_peaks_individual,
self.pick_peaks_button_individual)
self.ctlsizer2.Add(self.pick_peaks_button_individual)
self.open_ud_button = wx.Button(self.panel,
label="Open Selection in UniDec GUI")
self.Bind(wx.EVT_BUTTON, self.pres.on_open_ud, self.open_ud_button)
self.ctlsizer2.Add(self.open_ud_button)
label = wx.StaticText(self.panel,
label="Peaks for Manual Selection",
size=(300, 30))
label.SetFont(labelfont)
self.ctlsizer2.Add(label, 0)
self.singlepeakpanel = peaklistsort.PeakListCtrlPanel(self.panel,
meta=False,
size=(300, 300))
self.Bind(self.singlepeakpanel.EVT_DELETE_SELECTION_2,
self.pres.on_single_delete, self.singlepeakpanel)
self.Bind(self.singlepeakpanel.EVT_CHARGE_STATE,
self.pres.on_single_charge_states, self.singlepeakpanel)
self.Bind(self.singlepeakpanel.EVT_DIFFERENCES,
self.pres.on_single_differences, self.singlepeakpanel)
self.Bind(self.singlepeakpanel.EVT_MASSES,
self.pres.on_single_label_masses, self.singlepeakpanel)
self.ctlsizer2.Add(self.singlepeakpanel, 0, wx.EXPAND)
self.leftsizer.Add(self.ctlsizer2, 0, wx.EXPAND)
self.mainsizer.Add(self.leftsizer, 0, wx.EXPAND)
plotwindow = scrolled.ScrolledPanel(self.panel)
sizerplot = wx.GridBagSizer()
figsize = (4.9, 3.5)
self.plotc = plot1d.Plot1d(plotwindow, figsize=figsize) # Chromatogram
self.plotm = plot1d.Plot1d(
plotwindow, figsize=figsize) # Selection from chromatogram
self.plot1 = plot1d.Plot1d(plotwindow, smash=1,
figsize=figsize) # MUD Plot 1 m/z cascade
self.plot2 = plot1d.Plot1d(plotwindow,
figsize=figsize) # MUD Deconvolved Data
self.plot7 = plot1d.Plot1d(plotwindow,
figsize=figsize) # MUD Extraction
self.plot2s = plot1d.Plot1d(plotwindow,
figsize=figsize) # Selection mass
self.plot3 = plot2d.Plot2d(plotwindow,
figsize=figsize) # MUD 2D m/z vs. time
self.plot5 = plot2d.Plot2d(plotwindow,
figsize=figsize) # MUD 2D mass vs. time
sizerplot.Add(self.plotc, (0, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plotm, (1, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot1, (0, 1), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot2, (1, 1), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot7, (2, 1), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot2s, (2, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot3, (3, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot5, (3, 1), span=(1, 1), flag=wx.EXPAND)
self.plots = [
self.plotc, self.plotm, self.plot1, self.plot2, self.plot7,
self.plot2s, self.plot3, self.plot5
]
self.plotnames = [
"Chrom_TIC", "Chrom_mz_selected", "ChromFigure_mz",
"ChromFigure_mass", "ChromFigure_XIC", "Chrom_mass_selected",
"Chrom2Dmz", "Chrom2Dmass"
]
plotwindow.SetSizerAndFit(sizerplot)
plotwindow.SetupScrolling()
self.mainsizer.Add(plotwindow, 1, wx.EXPAND)
self.sizer3 = wx.BoxSizer(wx.VERTICAL)
label = wx.StaticText(self.panel,
label=" Peaks for Parsed Spectra",
size=(300, 30))
label.SetFont(labelfont)
self.sizer3.Add(label, 0)
self.peakpanel = peaklistsort.PeakListCtrlPanel(self.panel, meta=True)
self.Bind(self.peakpanel.EVT_DELETE_SELECTION_2, self.pres.on_delete,
self.peakpanel)
self.Bind(self.peakpanel.EVT_CHARGE_STATE,
self.pres.on_charge_states_mud, self.peakpanel)
self.Bind(self.peakpanel.EVT_DIFFERENCES, self.pres.on_differences,
self.peakpanel)
self.Bind(self.peakpanel.EVT_MASSES, self.pres.on_label_masses,
self.peakpanel)
self.sizer3.Add(self.peakpanel, 0, wx.EXPAND)
self.mainsizer.Add(self.sizer3, 0, wx.EXPAND)
self.controls = main_controls(self, self.config, self.pres, self.panel,
self.icon_path)
self.mainsizer.Add(self.controls, 0, wx.EXPAND)
self.panel.SetSizer(self.mainsizer)
self.mainsizer.Fit(self)
keys = [
["E", self.pres.on_auto, self.controls.autobutton],
# ["G", self.pres.on_paste_spectrum, self.menu.menupastespectrum],
["R", self.pres.on_unidec_button, self.controls.udbutton],
["D", self.pres.on_dataprep_button, self.controls.dataprepbutton],
["O", self.pres.on_open,
self.menu.openmenu], # ["I", self.pres.on_integrate],
["P", self.pres.on_pick_peaks,
self.controls.plotbutton], # ["K", self.pres.on_plot_peaks],
# ["C", self.pres.on_plot_composite, self.controls.compositebutton],
# ["N", self.pres.on_wizard, self.menu.wizardmenu],
# ["F", self.pres.on_plot_offsets], # ["Z", self.pres.on_charge_plot],
# ["L", self.pres.on_load_state], ["S", self.pres.on_save_state],
# ["B", self.pres.on_batch_run, self.menu.menubatchrun],
["Q", self.on_exit, self.menu.menuExit],
["T", self.pres.on_mass_tools, self.menu.menuMassFile],
["M", self.pres.on_match, self.menu.menumatch],
["W", self.pres.on_auto_peak_width, self.menu.menuAutoWidth],
# ["Z", self.pres.on_undo, self.menu.menuundo],
# ["Y", self.pres.on_redo, self.menu.menuredo],
["K", self.pres.on_kendrick, self.menu.menukendrick]
]
self.setup_shortcuts(keys)
self.Centre()
self.Show(True)
def setupmainpanel(self):
sizer = wx.BoxSizer(wx.HORIZONTAL)
panel = wx.Panel(self)
file_drop_target = MyFileDropTarget(self)
panel.SetDropTarget(file_drop_target)
self.ypanel = ListCtrlPanel(panel, self.pres, size=(300, 300))
sizer.Add(self.ypanel, 0, wx.EXPAND)
# Tabbed view of plots
if self.tabbed == 1:
figsize = (6, 5)
plotwindow = wx.Notebook(panel)
tab1 = wx.Panel(plotwindow)
tab2 = wx.Panel(plotwindow)
tab3 = wx.Panel(plotwindow)
tab5 = wx.Panel(plotwindow)
tab6 = wx.Panel(plotwindow)
tab7 = wx.Panel(plotwindow)
tab8 = wx.Panel(plotwindow)
tab9 = wx.Panel(plotwindow)
self.plot1 = plot1d.Plot1d(tab1, smash=1, figsize=figsize)
self.plot2 = plot1d.Plot1d(tab2, integrate=1, figsize=figsize)
self.plot3 = plot2d.Plot2d(tab3, figsize=figsize)
self.plot5 = plot2d.Plot2d(tab5, figsize=figsize)
self.plot6 = plot1d.Plot1d(tab6, figsize=figsize)
self.plot7 = plot1d.Plot1d(tab7, figsize=figsize)
self.plot8 = plot2d.Plot2d(tab8, figsize=figsize)
self.plot9 = plot1d.Plot1d(tab9, figsize=figsize)
miscwindows.setup_tab_box(tab1, self.plot1)
miscwindows.setup_tab_box(tab2, self.plot2)
miscwindows.setup_tab_box(tab3, self.plot3)
miscwindows.setup_tab_box(tab5, self.plot5)
miscwindows.setup_tab_box(tab6, self.plot6)
miscwindows.setup_tab_box(tab7, self.plot7)
miscwindows.setup_tab_box(tab8, self.plot8)
miscwindows.setup_tab_box(tab9, self.plot9)
plotwindow.AddPage(tab1, "MS Data")
plotwindow.AddPage(tab9, "Charge Distributions")
plotwindow.AddPage(tab2, "Mass Distribution")
plotwindow.AddPage(tab7, "Extracts Line Plot")
plotwindow.AddPage(tab8, "Extracts Grid Plot")
plotwindow.AddPage(tab6, "Bar Chart")
plotwindow.AddPage(tab3, "m/z Grid")
plotwindow.AddPage(tab5, "Mass vs. Charge")
sizer.Add(plotwindow, 1, wx.EXPAND)
else:
self.plotpanel = scrolled.ScrolledPanel(panel)
sizerplot = wx.GridBagSizer()
figsize = self.config.figsize
self.plot1 = plot1d.Plot1d(self.plotpanel, smash=1, figsize=figsize)
self.plot2 = plot1d.Plot1d(self.plotpanel, integrate=1, figsize=figsize)
self.plot3 = plot2d.Plot2d(self.plotpanel, figsize=figsize)
self.plot5 = plot2d.Plot2d(self.plotpanel, figsize=figsize)
self.plot6 = plot1d.Plot1d(self.plotpanel, figsize=figsize)
self.plot7 = plot1d.Plot1d(self.plotpanel, figsize=figsize)
self.plot8 = plot2d.Plot2d(self.plotpanel, figsize=figsize)
self.plot9 = plot1d.Plot1d(self.plotpanel, figsize=figsize)
sizerplot.Add(self.plot1, (0, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot9, (0, 1), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot2, (1, 0), span=(1, 2), flag=wx.EXPAND)
sizerplot.Add(self.plot6, (3, 0), span=(1, 2), flag=wx.EXPAND)
sizerplot.Add(self.plot7, (2, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot8, (2, 1), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot3, (4, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot5, (4, 1), span=(1, 1), flag=wx.EXPAND)
self.plotpanel.SetSizerAndFit(sizerplot)
self.plotpanel.SetupScrolling()
sizer.Add(self.plotpanel, 1, wx.EXPAND)
self.plots = [self.plot1, self.plot2, self.plot6, self.plot7, self.plot8, self.plot9, self.plot3, self.plot5]
self.plotnames = ["MetaFigure1", "MetaFigure2", "MetaFigure3", "MetaFigure4", "MetaFigure5", "MetaFigure6",
"MeatFigure7", "MetaFigure8"]
self.peakpanel = peaklistsort.PeakListCtrlPanel(panel, meta=True)
self.Bind(self.peakpanel.EVT_DELETE_SELECTION_2, self.pres.on_delete, self.peakpanel)
self.Bind(self.peakpanel.EVT_CHARGE_STATE, self.pres.on_charge_states_mud, self.peakpanel)
self.Bind(self.peakpanel.EVT_DIFFERENCES, self.pres.on_differences, self.peakpanel)
self.Bind(self.peakpanel.EVT_MASSES, self.pres.on_label_masses, self.peakpanel)
sizer.Add(self.peakpanel, 0, wx.EXPAND)
self.controls = main_controls(self, self.config, self.pres, panel, self.icon_path)
sizer.Add(self.controls, 0, wx.EXPAND)
# Set everything up
panel.SetSizer(sizer)
sizer.Fit(self)
self.CreateStatusBar(7)
self.SetStatusWidths([-1, 600, 120, 0, 230, 250, 130])
def __init__(self,
parent,
title,
config,
iconfile="logo.ico",
tabbed=None):
"""
initialize window and feed in links to presenter and config.
:param parent: GUniDec Presenter -> self.pres
:param title: Window title (string)
:param config: UniDecConfig object ->self.config
:return: None
"""
MainwindowBase.__init__(self, parent, title, config, iconfile, tabbed)
self.CreateStatusBar(4)
self.SetStatusWidths([-1, 150, 150, 150])
pub.subscribe(self.on_motion, 'newxy')
# pub.subscribe(self.on_selection, 'scans_selected')
self.filemenu = wx.Menu()
self.menuOpen = self.filemenu.Append(wx.ID_SAVE, "Open File Set",
"Open File Set")
# self.Bind(wx.EVT_MENU, self.on_open, self.menuOpen)
self.menuSave = self.filemenu.Append(wx.ID_SAVE, "Save File Set",
"Save File Set")
# self.Bind(wx.EVT_MENU, self.on_open, self.menuOpen)
self.menuAdd = self.filemenu.Append(wx.ID_SAVE, "Add Files To Set",
"Add Files To Set")
self.Bind(wx.EVT_MENU, self.pres.on_add, self.menuAdd)
self.menuBar = wx.MenuBar()
self.menuBar.Append(self.filemenu, "&File")
self.SetMenuBar(self.menuBar)
self.panel = wx.Panel(self)
# self.panel.SetDropTarget(ChromDropTarget(self))
self.sizer = wx.BoxSizer(wx.VERTICAL)
self.inputsizer = wx.BoxSizer(wx.HORIZONTAL)
self.filelist = UDListCtrlPanel(self.panel)
self.Bind(wx.EVT_LIST_ITEM_SELECTED, self.on_click, self.filelist.list)
self.inputsizer.Add(self.filelist)
self.plotsizer = wx.BoxSizer(wx.VERTICAL)
self.plot4 = plot1d.Plot1d(self.panel)
self.plot2 = plot1d.Plot1d(self.panel)
self.insetplot = plot1d.Plot1d(self.panel)
self.multiplot = plot1d.Plot1d(self.panel)
self.plotsizer.Add(self.multiplot)
self.plotsizer.Add(self.insetplot)
self.plotsizer.Add(self.plot4)
self.plotsizer.Add(self.plot2)
self.inputsizer.Add(self.plotsizer)
self.peakpanel = peaklistsort.PeakListCtrlPanel(self.panel)
self.Bind(self.peakpanel.EVT_DELETE_SELECTION_2, self.pres.on_replot,
self.peakpanel)
self.Bind(self.peakpanel.EVT_CHARGE_STATE, self.pres.on_charge_states,
self.peakpanel)
self.Bind(self.peakpanel.EVT_DIFFERENCES, self.pres.on_differences,
self.peakpanel)
self.Bind(self.peakpanel.EVT_MASSES, self.pres.on_label_masses,
self.peakpanel)
self.inputsizer.Add(self.peakpanel, 0, wx.EXPAND)
self.sizer.Add(self.inputsizer, 1, wx.EXPAND)
self.panel.SetSizer(self.sizer)
self.sizer.Fit(self)
self.Centre()
self.Show(True)