def update_properties(self):
"""
Updates properties files of the ejbca
:return:
"""
file_web = self.get_web_prop_file()
file_ins = self.get_install_prop_file()
prop_web = util.merge(self.WEB_PROPERTIES, self.web_props)
prop_ins = util.merge(self.INSTALL_PROPERTIES, self.install_props)
prop_hdr = '#\n'
prop_hdr += '# Config file generated: %s\n' % (
datetime.now().strftime("%Y-%m-%d %H:%M"))
prop_hdr += '#\n'
file_web_hnd = None
file_ins_hnd = None
try:
file_web_hnd, file_web_backup = util.safe_create_with_backup(
file_web, 'w', 0o644)
file_ins_hnd, file_ins_backup = util.safe_create_with_backup(
file_ins, 'w', 0o644)
file_web_hnd.write(prop_hdr + self.properties_to_string(prop_web) +
"\n\n")
file_ins_hnd.write(prop_hdr + self.properties_to_string(prop_ins) +
"\n\n")
finally:
if file_web_hnd is not None:
file_web_hnd.close()
if file_ins_hnd is not None:
file_ins_hnd.close()
def build_vocab(self, file_contents, write=True):
if self.split_kind == "bpe" and self.split_file:
self.token_counts = self.build_bpe_full_file(file_contents)
top_words = sorted(self.token_counts.items(),
key=lambda i: i[1],
reverse=True)
top_words = [t[0]
for t in top_words] # if t[1] >= self.vocab_cutoff]
elif self.split_kind == "chars":
top_words = [chr(c) for c in range(33, 127)]
self.token_counts = {c: 1000 for c in top_words}
else:
self.token_counts = {}
self.w2i = None
for file in file_contents:
for label in re.split('\s+', file):
subtokens = [
label
] if self.split_kind != "heuristic" else util.split_subtokens(
label)
for sub in subtokens:
util.merge(self.token_counts, sub, 1)
# Ensure some key tokens make it into the vocabulary
if "<unk>" not in self.token_counts:
self.token_counts["<unk>"] = max(
self.vocab_cutoff,
sum([
c for c in self.token_counts.values()
if c < self.vocab_cutoff
]))
for ix, s in enumerate(self.special_tokens):
if s not in self.token_counts or self.split_kind == "bpe":
self.token_counts[s] = int(1e9) + ix
if self.split_kind == "bpe":
print("Computing BPE on", len(self.token_counts), "tokens")
self.token_counts = self.build_bpe(self.token_counts)
top_words = sorted(self.token_counts.items(),
key=lambda i: i[1],
reverse=True)
top_words = [t[0] for t in top_words
] # if t[1] >= self.vocab_cutoff]
else:
# Sort and discard tokens to infrequent to keep
top_words = sorted(self.token_counts.items(),
key=lambda t: t[1],
reverse=True)
top_words = [
t[0] for t in top_words if t[1] >= self.vocab_cutoff
]
# Build the vocabulary
self.w2i = {w: i for i, w in enumerate(top_words)}
self.i2w = {i: w for w, i in self.w2i.items()}
if write:
self.save_vocab(self.out_vocab_path)
def merge(self, cond, c1, c2):
self.globals = util.merge(cond, c1.globals, c2.globals)
self.locals = util.merge(cond, c1.locals, c2.locals)
self.references = util.merge(cond, c1.references, c2.references)
self.accessed = c1.accessed.union(c2.accessed)
assert self.path_condition == c1.path_condition
assert self.path_condition == c2.path_condition
assert self.side_conditions == c1.side_conditions
assert self.side_conditions == c2.side_conditions
def stitch_blocks(blocks, model, size):
# save original size
orig_size = blocks[0].shape
# cast to uint8 if necessary
# in either case scale down images
if blocks[0].dtype == 'uint16':
A, B, C, D = map(lambda x: resize(x, size),
map(uint16_to_uint8, blocks))
else:
A, B, C, D = map(lambda x: resize(x, size), blocks)
start = time()
# get transforms
t_AB = est_transform(A, B, model, orig_size)
t_CD = est_transform(C, D, model, orig_size)
# for the vertical component take the mean of AC and BD
t_AC = est_transform(A, C, model, orig_size)
t_BD = est_transform(B, D, model, orig_size)
t_v = (t_AC + t_BD) / 2
# use original images from here on
A, B, C, D = blocks
# translation net
if t_AB.size == 2:
# stitch
im_ab = merge(A, B, *t_AB)
im_cd = merge(C, D, *t_CD)
final = merge(im_ab, im_cd, *t_v)
# add theta component to transform
t_AB = t_AB.tolist() + [0]
t_CD = t_CD.tolist() + [0]
t_v = t_v.tolist() + [0]
return (final, [t_AB, t_CD, t_v], time() - start)
# regular hnet
shape = A.shape
h_AB = points_to_affine(shape, t_AB)
h_CD = points_to_affine(shape, t_CD)
h_AC = points_to_affine(shape, t_AC)
h_BD = points_to_affine(shape, t_BD)
h_v = (h_AC + h_BD) / 2
# stitch
im_ab, t1 = warp_merge(A, B, h_AB)
im_cd, t2 = warp_merge(C, D, h_CD)
final, t3 = warp_merge(im_ab, im_cd, h_v)
# affine transforms kept as np arrays
return (final, [t1, t2, t3], time() - start)
def merge_sort(arr):
l = len(arr)
# merge subarrays of sizes doubling from 1 to array length
cur_size = 1
while cur_size < l:
lo = 0
while lo < l - 1: # for every nonoverlapping window of current size
mid = lo + cur_size
hi = min(mid + cur_size, l) # not going out of bounds
merge(arr, lo, mid, hi)
lo += 2 * cur_size # advance by full size
cur_size *= 2 # double the current size
def get_train_dataset(args,
target_data_dir,
target_dataset,
tokenizer,
split_name,
source_data_dir=None,
source_dataset=None):
dataset_dict_source = None
dataset_dict_target = None
data_encodings_source = None
source_dataset_name = 'individual'
target_dataset_name = 'individual'
if source_data_dir is not None and source_dataset is not None:
datasets = source_dataset.split(',')
label = 0
for dataset in datasets:
source_dataset_name += f'_{dataset}'
dataset_dict_curr = util.read_squad(f'{source_data_dir}/{dataset}',
label=label)
dataset_dict_source = util.merge(dataset_dict_source,
dataset_dict_curr)
label += 1
data_encodings_source = read_and_process(args, tokenizer,
dataset_dict_source,
source_data_dir,
source_dataset_name,
split_name)
label = 3
datasets = target_dataset.split(',')
for dataset in datasets:
target_dataset_name = f'_{dataset}'
# dataset_dict_curr = util.read_squad(f'{target_data_dir}/{dataset}', label=1)
dataset_dict_curr = xuran_perform_eda.perform_eda(
f'{target_data_dir}/{dataset}',
dataset,
train_fraction=1,
label=label)
dataset_dict_target = util.merge(dataset_dict_target,
dataset_dict_curr)
label += 1
data_encodings_target = read_and_process(args, tokenizer,
dataset_dict_target,
target_data_dir,
target_dataset_name, split_name)
dataset_dict = util.merge(dataset_dict_source, dataset_dict_target)
data_encodings = util.merge(data_encodings_source, data_encodings_target)
return util.QADomainDataset(data_encodings,
train=(split_name == 'train')), dataset_dict
def sobel_filter(image):
kernelx = np.array(([-1, 0, 1], [-2, 0, 2], [-1, 0, 1]))
kernely = np.array(([-1, -2, -1], [0, 0, 0], [1, 2, 1]))
if len(image.shape) == 2:
gx = conv(image, kernelx)
gy = conv(image, kernely)
output = abs(gx) + abs(gy) # np.sqrt(gx ** 2 + gy ** 2) slower
output[np.where(output > MAX_PIXEL)] = MAX_PIXEL
return output.astype(np.uint8)
else:
r, g, b = util.split(image)
rx, ry = conv(r, kernelx), conv(r, kernely)
gx, gy = conv(g, kernelx), conv(g, kernely)
bx, by = conv(b, kernelx), conv(b, kernely)
R = abs(rx) + abs(ry)
G = abs(gx) + abs(gy)
B = abs(bx) + abs(by)
output = util.merge(R, G, B)
output[np.where(output > MAX_PIXEL)] = MAX_PIXEL
return output.astype(np.uint8)
def test_merge_into():
dst = {'k4': {'v41': 'vv41'}}
src1 = {'k1': 'v1'}
src2 = {'k2': 'v2'}
src3 = {'k3': {'v3': 'vv3'}}
src4 = {'k4': {'v4': 'vv4'}}
result = merge_into(dst, src1, src2, src3, src4)
assert result is dst
assert result['k1'] == 'v1'
assert result['k2'] == 'v2'
assert isinstance(result['k3'], dict)
assert result['k3']['v3'] == 'vv3'
assert result['k4']['v41'] == 'vv41'
assert result['k4']['v4'] == 'vv4'
result = merge(src1, src2, src3)
assert result is not dst
assert result is not src1
assert result is not src2
assert result is not src3
assert result['k1'] == 'v1'
assert result['k2'] == 'v2'
assert isinstance(result['k3'], dict)
assert result['k3']['v3'] == 'vv3'
assert 'k1' in src1
assert 'k1' not in src2
assert 'k1' not in src3
assert 'k2' not in src1
assert 'k2' in src2
assert 'k2' not in src3
assert 'k3' not in src1
assert 'k3' not in src2
assert 'k3' in src3
async def run(memory, phases):
async with trio.open_nursery() as nursery:
# set up channels
a_send, a_recv = trio.open_memory_channel(0)
b_send, b_recv = trio.open_memory_channel(0)
# need a relay channel so we can tell when a needs input
r_send, r_recv = trio.open_memory_channel(0)
nursery.start_soon(intcode.process, memory, a_recv, r_send)
c_send, c_recv = trio.open_memory_channel(0)
nursery.start_soon(intcode.process, memory, b_recv, c_send, False)
d_send, d_recv = trio.open_memory_channel(0)
nursery.start_soon(intcode.process, memory, c_recv, d_send, False)
e_send, e_recv = trio.open_memory_channel(0)
nursery.start_soon(intcode.process, memory, d_recv, e_send, False)
f_send, f_recv = trio.open_memory_channel(0)
nursery.start_soon(intcode.process, memory, e_recv, f_send, False)
# input phases
await a_send.send(phases[0])
await b_send.send(phases[1])
await c_send.send(phases[2])
await d_send.send(phases[3])
await e_send.send(phases[4])
sig = 0
async with a_send, f_recv:
async for out, ch in merge(nursery, r_recv, f_recv):
if ch == r_recv:
if out == intcode.Command.INPUT:
await a_send.send(sig)
else:
await b_send.send(out)
else:
sig = out
return sig
def get_all():
dataset = pd.read_csv("data\Students_Performance.csv")
dataset = pd.get_dummies(dataset,
columns=[
"gender", "race/ethnicity",
"parental level of education", "lunch",
"test preparation course"
],
prefix=[
"gender", "race/ethnicity", "parental",
"lunch", "preparation"
])
#dataset['final_score'] = dataset['math score'] + dataset['reading score'] + dataset['writing score']
#dataset['final_score'] = dataset.final_score.map(lambda x: ceil(x))
#dataset['pass'] = dataset.final_score.map(lambda x: 1 if x/3 > 70 else 0)
#dataset['index'] = range(0, len(dataset))
#del dataset['final_score']
#del dataset['math score']
del dataset['reading score']
del dataset['writing score']
#dataset_good = dataset[dataset['pass'] == 1]
#dataset_bad = dataset[dataset['pass'] == 0]
dataset_good = dataset[dataset['math score'] > 80]
dataset_bad = dataset[dataset['math score'] <= 80]
#del dataset_good['math score']
#del dataset_bad['math score']
print(dataset_good.columns.tolist())
print(len(dataset_good.columns.tolist()))
both_sides = util.merge(dataset_good, dataset_bad, 18)
return dataset, both_sides
def __getResponse(self):
inp_stream = list()
timeout = time() + 0.1
while self.inWaiting()==0:
now = time()
if now > timeout and self.inWaiting()==0:
return False
timeout = 0;
while self.read()!='~':
if timeout == 100:
return False
timeout+=1
inp_stream.append(0x7e)
MSB = ord(self.read())
LSB = ord(self.read())
lenght = merge(MSB,LSB)
inp_stream.append(MSB)
inp_stream.append(LSB)
for i in xrange(lenght+1):
inp_stream.append(ord(self.read()))
#debug
#print "Xbee.__getResponse() = {}".format(inp_stream)
return inp_stream
def remove_singleton_indices(dag):
""" Remove unnecessary index operations from a dag
merges two operations that look like this
{(out,) : {'fn': op, 'args': args}
out : {'fn': index, 'args': ((out,) 0)}}
into just one that looks like this
{out : {'fn': op, 'args': args}}
i.e. it unpacks singleton tuples
Reverses:
insert_single_indices
"""
# dict of shortcuts
quick_outs = {out: dag[(out,)] for out in dag if (out,) in dag}
def badkey(out):
return (out in quick_outs
or ( isinstance(out, tuple)
and len(out) == 1
and out[0] in quick_outs))
clean_dag = {out : dag[out] for out in dag
if not badkey(out)}
return merge(clean_dag, quick_outs)
def __getResponse(self):
inp_stream = list()
timeout = time() + 0.1
while self.inWaiting() == 0:
now = time()
if now > timeout and self.inWaiting() == 0:
return False
timeout = 0
while self.read() != '~':
if timeout == 100:
return False
timeout += 1
inp_stream.append(0x7e)
MSB = ord(self.read())
LSB = ord(self.read())
lenght = merge(MSB, LSB)
inp_stream.append(MSB)
inp_stream.append(LSB)
for i in xrange(lenght + 1):
inp_stream.append(ord(self.read()))
#debug
#print "Xbee.__getResponse() = {}".format(inp_stream)
return inp_stream
def train(self, config):
if config.is_train:
input_setup(self.sess, config)
else:
nx, ny = input_setup(self.sess, config) # 合并图像块数
if config.is_train:
data_path = os.path.join("./", config.checkpoint_dir, "train.h5")
else:
data_path = os.path.join("./", config.checkpoint_dir, "test.h5")
train_data, train_label = read_data(data_path)
self.train_op = tf.train.GradientDescentOptimizer(
config.learning_rate).minimize(self.loss)
tf.global_variables_initializer().run()
counter = 0 # 输出判断数
start_time = time.time()
# 加载训练数据
if self.load(config.checkpoint_dir):
print("[*] Load SUCCESS")
else:
print("[!] Load Failed")
if config.is_train:
print("Train....")
batch_index = len(train_data) // config.batch_size
for ep in range(config.epoch):
for idx in range(batch_index):
batch_images = train_data[idx *
config.batch_size:(idx + 1) *
config.batch_size]
batch_labels = train_label[idx *
config.batch_size:(idx + 1) *
config.batch_size]
_, err = self.sess.run([self.train_op, self.loss], {
self.images: batch_images,
self.labels: batch_labels
})
counter += 1
if counter % 10 == 0:
print(
"Epoch: %2d,step: %2d,time: %4.4f,loss: %.8f" %
((ep + 1), counter, time.time() - start_time, err))
if counter % 500 == 0:
self.save(config.checkpoint_dir, counter)
else:
print("Test...")
result = self.pred.eval({
self.images: train_data,
self.labels: train_label
})
result = merge(result, [nx, ny])
result = result.squeeze() # squeese():把 result 的 ? 维度删除
image_path = os.path.join(os.getcwd(), config.sample_dir,
"text_image.png")
imsave(image_path, result)
def contraharmonic_mean_filter_rgb(image, filter_size, Q=1):
r, g, b = util.split(image)
R = contraharmonic_mean_filter(r, filter_size, Q)
G = contraharmonic_mean_filter(g, filter_size, Q)
B = contraharmonic_mean_filter(b, filter_size, Q)
output = util.merge(R, G, B)
return output.astype(np.uint8)
def harmonic_mean_filter_rgb(image, filter_size):
r, g, b = util.split(image)
R = harmonic_mean_filter(r, filter_size)
G = harmonic_mean_filter(g, filter_size)
B = harmonic_mean_filter(b, filter_size)
output = util.merge(R, G, B)
return output.astype(np.uint8)
def median_filter_rgb(image, filter_size):
r, g, b = util.split(image)
R = median_filter(r, filter_size)
G = median_filter(g, filter_size)
B = median_filter(b, filter_size)
output = util.merge(R, G, B)
return output.astype(np.uint8)
def test03PopulateProjects(self):
"""002-03 Populate test projects"""
r = self.client.post('/project/',
merge(self.PUBLIC_PROJECT_DATA,
self.PUBLIC_PROJECT_VOLATILE,
account=self.account.id,
regions=[self.AWS_REGION]))
self.assertCode(r, 201)
self.assertIsNotNone(self.project_public)
r = self.client.post('/project/',
merge(self.VPC_PROJECT_DATA,
self.VPC_PROJECT_VOLATILE,
account=self.account.id,
regions=[self.AWS_REGION]))
self.assertCode(r, 201)
self.assertIsNotNone(self.project_vpc)
def preprocessTests(self):
for name in self.tests:
self.tests[name] = util.merge(self.default_test, self.tests[name])
for name in self.tests:
test = self.tests[name]
if "base" in test:
print("Derive %s from %s" % (name, test["base"]))
self.tests[name] = util.merge(
self.tests[self.tests[name]["base"]], self.tests[name])
print(self.tests[self.tests[name]["base"]])
if test["reference"] == None:
raise RuntimeError(
"Reference genome path must be defined for data set")
if not os.path.exists(test["reference"]):
if os.path.exists(self.config["reference_directory"] + "/" +
test["reference"]):
test["reference"] = os.path.abspath(
self.config["reference_directory"] + "/" +
test["reference"])
else:
test["reference"] = os.path.abspath(test["reference"])
if not os.path.exists(test["reference"]):
raise RuntimeError("Reference '%s' not found for test '%s'" %
(test["reference"], name))
if test["title"] == None:
test["title"] = name
if test["order"] == None:
test["order"] = name
if test["simulator"] == None:
if test["platform"] == "ion_torrent":
test["simulator"] = "dwgsim"
else:
test["simulator"] = "mason"
test["name"] = name
test["dir"] = os.path.abspath(self.config["test_directory"] + "/" +
name)
def get_dataset(args, datasets, data_dir, tokenizer, split_name):
datasets = datasets.split(',')
dataset_dict = None
dataset_name=''
for dataset in datasets:
dataset_name += f'_{dataset}'
dataset_dict_curr = util.read_squad(f'{data_dir}/{dataset}')
dataset_dict = util.merge(dataset_dict, dataset_dict_curr)
data_encodings = read_and_process(args, tokenizer, dataset_dict, data_dir, dataset_name, split_name)
return util.QADataset(data_encodings, train=(split_name=='train')), dataset_dict
def conv_filter(image, kernel):
if len(image.shape) == 2:
return conv(image, kernel)
else:
r, g, b = util.split(image)
R = conv(r, kernel)
G = conv(g, kernel)
B = conv(b, kernel)
output = util.merge(R, G, B)
return output.astype(np.uint8)
def get_dataset_eda_revised(args, datasets, data_dir, tokenizer, split_name, train_fraction):
datasets = datasets.split(',')
dataset_dict = None
dataset_name=''
for dataset in datasets:
dataset_name += f'_{dataset}'
# dataset_dict_curr = util.read_squad(f'{data_dir}/{dataset}')
dataset_dict_curr = xuran_perform_eda.perform_eda(f'{data_dir}/{dataset}', dataset, train_fraction)
dataset_dict = util.merge(dataset_dict, dataset_dict_curr)
data_encodings = read_and_process(args, tokenizer, dataset_dict, data_dir, dataset_name, split_name)
return util.QADataset(data_encodings, train=(split_name=='train')), dataset_dict
def load_tests(self, conf):
tests = {}
for name, info in conf.iteritems():
if name in ['output_dir', 'env', 'before', 'after']:
continue
info = merge(info, conf)
tests[name] = Test(name, info)
return tests
def user_data(self, data={}, user=None):
"Fill in the user data in the template data. "
user = users.get_current_user()
if not user:
return data
user_data = {
'email': user,
'admin': users.is_current_user_admin(),
'logout': users.create_logout_url("/"),
}
return util.merge(data, user=user_data)
def test02PopulateAccount(self):
"""002-02 Populate test account"""
r = self.client.post('/account/',
merge(self.ACCOUNT_DATA,
domain=self.domain.id,
access_key=self.AWS_ACCESS_KEY_ID,
secret_key=self.AWS_SECRET_ACCESS_KEY))
self.assertCode(r, 201)
self.assertIsNotNone(self.account)
r = self.client.post('/account/',
merge(self.DUMMY_ACCOUNT_DATA,
domain=self.dummy_domain.id,
access_key='4298374984',
secret_key='5432543534',
active=False))
self.assertCode(r, 201)
self.assertIsNotNone(self.dummy_account)
def get_all():
dataset = prepare_titanic_data("data\\Titanic.csv")
dataset_good = dataset[dataset['survived'] == 1]
dataset_bad = dataset[dataset['survived'] == 0]
del dataset_good['survived']
del dataset_bad['survived']
both_sides = util.merge(dataset_good, dataset_bad, 9)
#print(both_sides.columns.tolist())
return dataset, both_sides
def gaussian_filter(image, filter_size, sigma):
kernel = gaussian_kernel(filter_size, sigma)
if len(image.shape) == 2:
return conv(image, kernel)
else:
r, g, b = util.split(image)
R = conv(r, kernel)
G = conv(g, kernel)
B = conv(b, kernel)
output = util.merge(R, G, B)
return output.astype(np.uint8)
def train(self,config):
if config.train:
input_setup(self.sess,config)
data = os.path.join(os.getcwd(),'checkpoint\\train.h5')
print(data)
else:
x,y = input_setup(self.sess,config)
data = os.path.join(os.getcwd(),'checkpoint\\test.h5')
train_data,train_label = read_data(data)
#print(train_label.shape)
self.optimizer = tf.train.AdamOptimizer(config.learning_rate).minimize(self.loss)
self.sess.run(tf.global_variables_initializer())
counter = 0
if self.load(self.chkpt):
print('Load Success')
else:
print('Load fail')
if config.train:
for i in range(config.epoch):
batch_idx = len(train_data) // config.batch_size
for idx in range(0,batch_idx):
batch_data = train_data[idx * config.batch_size:(idx+1)* config.batch_size]
batch_label = train_label[idx * config.batch_size:(idx+1)* config.batch_size]
#print(train_data.shape)
counter +=1
_,out = self.sess.run([self.optimizer,self.loss],feed_dict={self.images:batch_data , self.labels:batch_label})
if counter%10 == 0:
print("epoch:%d, step:%d, loss:%.8f" % (i,counter,out))
if counter%100 == 0:
print(os.path.join(self.chkpt,"model_save"))
self.saver.save(self.sess,os.path.join(self.chkpt,"model_save"),global_step=counter)
else:
out = self.pred.eval({self.images:train_data,self.labels:train_label })
image = merge(out, [x,y], config.channel)
image_path = os.path.join(os.getcwd(), config.result_dir)
image_path = os.path.join(image_path, "test_image.png")
#Image.open(image).show()
save_img(image,image_path,config)
def mean_filter(image, filter_size):
kernel = np.ones((filter_size, filter_size)) * (1.0 / (filter_size**2))
if len(image.shape) == 2:
return conv(image, kernel)
else:
r, g, b = util.split(image)
R = conv(r, kernel)
G = conv(g, kernel)
B = conv(b, kernel)
output = util.merge(R, G, B)
return output.astype(np.uint8)
def find_scenarios(
scenario_pattern: str) -> Sequence[Tuple[str, dict, dict, dict]]:
scenarios: MutableSequence[Tuple[str, dict, dict, dict]] = []
for dir_name, subdir_list, file_list in os.walk('./tests/scenarios'):
for file_name in file_list:
full_file_name = os.path.join(dir_name, file_name)
if not re.match(scenario_pattern, full_file_name):
continue
file_description = full_file_name[0:-5]
try:
with open(full_file_name, 'r') as f:
if file_name.endswith('.yaml'):
content: dict = yaml.load(f)
elif file_name.endswith('.json'):
content: dict = json.loads(f.read())
else:
raise Exception(
f"unsupported scenarios file: {full_file_name}")
default_resource: dict = content["default_resource"] if "default_resource" in content else {}
default_expected: dict = content["default_expected"] if "default_expected" in content else {}
file_mock: dict = content["mock"] if "mock" in content else {}
for scenario in content["scenarios"]:
file_mock_copy: dict = deepcopy(file_mock)
scenarios.append(
(file_description + '_' +
(scenario["description"]
if "description" in scenario else "unknown"),
util.merge(file_mock_copy, scenario["mock"])
if "mock" in scenario else file_mock_copy,
util.merge(
deepcopy(default_resource), scenario["resource"]
if "resource" in scenario else {}),
util.merge(deepcopy(default_expected),
scenario["expected"])))
except Exception as e:
raise Exception(
f"failed creating scenario from '{full_file_name}'") from e
return scenarios
def _do_expt(self, pack):
src = pack.src
value = pack.key
row = self.expt.get(src)
# print('expt %d %f' % (src, value))
if row is None:
self.expt[src] = [value]
else:
self.expt[src].append(value)
# update server clocks
self.clocks = util.merge(self.clocks, pack.vc)
print('server merge %s' % str(self.clocks.inner))
self.scan_query()
def insert_single_indices(dag):
""" Add in all index operations from tuples, even singletons
Reverses:
remove_singleton_indices
"""
return merge(*[
{out: dag[out]}
if isinstance(out, tuple) or dag[out]['fn'] == index else
{(out,) : dag[out],
out : {'fn': index, 'args':((out,), 0)}}
for out in dag])
def get_all():
dataset = prepare_credit_data("data\\UCI_Credit_Card.csv")
dataset_good = dataset[dataset['default.payment.next.month'] == 0]
dataset_bad = dataset[dataset['default.payment.next.month'] == 1]
del dataset_good['default.payment.next.month']
del dataset_bad['default.payment.next.month']
#print(dataset_good.columns.tolist())
#print(len(dataset_good.columns.tolist()))
both_sides = util.merge(dataset_good, dataset_bad, 23)
return dataset, both_sides
def warp_merge(im1, im2, h):
'''
Grab the translation and rotation components and apply them.
This is more reliable than warpAffine because no parts of the image are lost
'''
x, y = h[0:2, 2]
# x = x/128 * im1.shape[1]
# y = y/128 * im1.shape[0]
th1 = math.atan(-h[0, 1] / h[0, 0]) * (180 / math.pi) # atan(-b/a)
th2 = math.atan(h[1, 0] / h[1, 1]) * (180 / math.pi) # atan(c/d)
th = (th1 + th2) / 2
warped = rotate_bound(im2, th)
return merge(im1, warped, x, y), [x, y, th]
def get_dataset(args, dataset, data_dir, tokenizer, split_name, dataset_idx=None):
if type(dataset) is list:
output_name = ''
dataset_dict = None
for dataset_name in dataset:
output_name += f'_{dataset_name}'
dataset_dict_curr = util.read_squad(f'{data_dir}/{dataset_name}')
dataset_dict = util.merge(dataset_dict, dataset_dict_curr)
else:
output_name = f'_{dataset}'
dataset_dict = util.read_squad(f'{data_dir}/{dataset}')
data_encodings = read_and_process(args, tokenizer, dataset_dict, data_dir, output_name, split_name, dataset_idx)
return util.QADataset(data_encodings, train=(split_name=='train')), dataset_dict
def preprocessTests(self):
for name in self.tests:
self.tests[name] = util.merge(self.default_test, self.tests[name])
for name in self.tests:
test = self.tests[name]
if "base" in test:
print("Derive %s from %s" % (name, test["base"]))
self.tests[name] = util.merge(self.tests[self.tests[name]["base"]], self.tests[name])
print(self.tests[self.tests[name]["base"]])
if test["reference"] == None:
raise RuntimeError("Reference genome path must be defined for data set")
if not os.path.exists(test["reference"]):
if os.path.exists(self.config["reference_directory"] + "/" + test["reference"]):
test["reference"] = os.path.abspath(self.config["reference_directory"] + "/" + test["reference"])
else:
test["reference"] = os.path.abspath(test["reference"])
if not os.path.exists(test["reference"]):
raise RuntimeError("Reference '%s' not found for test '%s'"%(test["reference"],name))
if test["title"] == None:
test["title"] = name
if test["order"] == None:
test["order"] = name
if test["simulator"] == None:
if test["platform"] == "ion_torrent":
test["simulator"] = "dwgsim"
else:
test["simulator"] = "mason"
test["name"] = name
test["dir"] = os.path.abspath(self.config["test_directory"] + "/" + name)
def get_dataset(args, datasets, data_dir, tokenizer, split_name):
datasets = datasets.split(',')
dataset_dict = None
dataset_name = 'individual'
label = 3 if 'val' in split_name else 0
for dataset in datasets:
dataset_name += f'_{dataset}'
dataset_dict_curr = util.read_squad(f'{data_dir}/{dataset}',
label=label)
dataset_dict = util.merge(dataset_dict, dataset_dict_curr)
label += 1
data_encodings = read_and_process(args, tokenizer, dataset_dict, data_dir,
dataset_name, split_name)
return util.QADomainDataset(data_encodings,
train=(split_name == 'train')), dataset_dict
def f(s):
args2 = reify(args, s)
subsets = [self.index[key] for key in enumerate(args) if key in self.index]
if subsets: # we are able to reduce the pool early
facts = intersection(*sorted(subsets, key=len))
else:
facts = self.facts
varinds = [i for i, arg in enumerate(args2) if isvar(arg)]
valinds = [i for i, arg in enumerate(args2) if not isvar(arg)]
vars = index(args2, varinds)
vals = index(args2, valinds)
assert not any(var in s for var in vars)
return (
merge(dict(zip(vars, index(fact, varinds))), s) for fact in self.facts if vals == index(fact, valinds)
)
def laplacian_filter(image, diagonal=True):
if diagonal:
kernel = np.array(([-1, -1, -1], [-1, 8, -1], [-1, -1, -1]))
else:
kernel = np.array(([0, 1, 0], [1, -4, 1], [0, 1, 0]))
if len(image.shape) == 2:
return conv(image, kernel)
else:
r, g, b = util.split(image)
R = conv(r, kernel)
G = conv(g, kernel)
B = conv(b, kernel)
output = util.merge(R, G, B)
return output.astype(np.uint8)
def generate(
corrections_map,
db_path,
raf_path,
fontconfig_path):
# Generate new contents
league = league_sql.generate(db_path, corrections_map)
league = util.merge(
league,
league_raf.generate(
league,
raf_path,
fontconfig_path,
corrections_map,
))
league = league_ability.fix(league)
return league
def __parceFrame(self, stream):
inp = stream
if not stream:
return False
inp.pop(0)
if len(inp) > 0:
MSB = inp.pop(0)
LSB = inp.pop(0)
lenght = merge(MSB, LSB)
else:
return False
self.__inpFrame['FrameType'] = inp.pop(0)
if self.__inpFrame['FrameType'] == 0x90:
self.__inpFrame['InputAdress64'] = inp[:8]
self.__inpFrame['InputAdress16'] = inp[8:10]
self.__inpFrame['Status'] = inp[10]
self.__inpFrame['Payload'] = inp[11:-1]
self.__availableFrame = True
#debug
#print "Xbee.__parceFrame() = FrameType {}".format(hex(self.__inpFrame['FrameType']))
return True
elif self.__inpFrame['FrameType'] == 0x8B:
self.__inpFrame['FrameId'] = inp.pop(0)
self.__inpFrame['InputAdress16'] = inp[0:2]
self.__inpFrame['TransmitRetry'] = inp.pop(2)
self.__inpFrame['Status'] = inp.pop(2)
self.__inpFrame['DiscoverStatus'] = inp.pop(2)
if self.__inpFrame['Status'] == 0x00:
#debug
#print "Xbee.__parceFrame() = FrameType {}".format(hex(self.__inpFrame['FrameType']))
return True
else:
print "Status : {}".format(self.__inpFrame['Status'])
print "DiscoverStatus : {}".format(
self.__inpFrame['DiscoverStatus'])
return False
else:
return False
def __parceFrame(self,stream):
inp = stream
if not stream:
return False
inp.pop(0)
if len(inp) > 0:
MSB = inp.pop(0)
LSB = inp.pop(0)
lenght = merge(MSB,LSB)
else:
return False
self.__inpFrame['FrameType'] = inp.pop(0)
if self.__inpFrame['FrameType'] == 0x90:
self.__inpFrame['InputAdress64'] = inp[:8]
self.__inpFrame['InputAdress16'] = inp[8:10]
self.__inpFrame['Status'] = inp[10]
self.__inpFrame['Payload'] = inp[11:-1]
self.__availableFrame = True
#debug
#print "Xbee.__parceFrame() = FrameType {}".format(hex(self.__inpFrame['FrameType']))
return True
elif self.__inpFrame['FrameType'] == 0x8B:
self.__inpFrame['FrameId'] = inp.pop(0)
self.__inpFrame['InputAdress16'] = inp[0:2]
self.__inpFrame['TransmitRetry'] = inp.pop(2)
self.__inpFrame['Status'] = inp.pop(2)
self.__inpFrame['DiscoverStatus'] = inp.pop(2)
if self.__inpFrame['Status'] == 0x00:
#debug
#print "Xbee.__parceFrame() = FrameType {}".format(hex(self.__inpFrame['FrameType']))
return True
else:
print "Status : {}".format(self.__inpFrame['Status'])
print "DiscoverStatus : {}".format(self.__inpFrame['DiscoverStatus'])
return False
else:
return False
def tuple_dag_to_index_dag(tdag):
""" Convert a tuple-dag into an index dag
Inserts index operations for all outputs. As a result each pseudo-job has
only one output, either a tuple or a single variable. It is now easy to
back-traverse the graph
Reverses:
remove_index_entries
"""
gets = {out:
{'fn' : index,
'args' : (outs, i)}
for outs in tdag if isinstance(outs, tuple)
for i, out in enumerate(outs)}
return merge(tdag, gets)
self.P = util.numpartitions(self.digits)
#if debug: print("Frontend connected: N=" + str(self.N) + ", K=" + str(self.K))
for line in lines:
if len(line) > 0:
node, index = line.split(",")
index = int(index)
self.nodes[index] = node
#if debug: print("Nodes: " + str(self.nodes))
peer = peerutil.getpeer("frontend", frontend)
try:
server = httputil.createserver(peer.port(),
util.merge({
"get" : get,
"set" : set,
},
peer.gethandlers()
)
)
except socket.error:
print("Could not bind on port: " + str(peer.port()))
else:
print("Frontend node serving on port: " + str(peer.port()))
peer.addself()
server.serve_forever()
def merge_sort_helper(arr, lo, hi):
if (hi - lo > 1): # continue until array has size one
mid = (lo + hi) // 2
merge_sort_helper(arr, lo, mid)
merge_sort_helper(arr, mid, hi)
merge(arr, lo, mid, hi)