def run_structmaker(run_id):
'''
So that output files can be located by family,
run_ids should have a consistent format:
RS_{familyname}
In any event, the family name is stored in the
input dict so there will be no problems running the
script is the run_id does not conform to this format.
'''
inp_dict = bsub.load_data(run_id, 'input')
fam = inp_dict['family']
savename = inp_dict['savename']
structs, energies, seq = rutils.family_clustered_suboptimals(\
fam,
savename = savename,
draw = True)
output = {'family':fam,
'structs':structs,
'energies':energies,
'seq':seq}
return output
def run_structmaker(run_id):
'''
So that output files can be located by family,
run_ids should have a consistent format:
RS_{familyname}
In any event, the family name is stored in the
input dict so there will be no problems running the
script is the run_id does not conform to this format.
'''
inp_dict = bsub.load_data(run_id, 'input')
fam = inp_dict['family']
savename = inp_dict['savename']
structs, energies, seq = rutils.family_clustered_suboptimals(\
fam,
savename = savename,
draw = True)
output = {
'family': fam,
'structs': structs,
'energies': energies,
'seq': seq
}
return output
def make_ribostructs():
for k, v in rutils.switch_dicts().iteritems():
rfid = 'RF{0:05}'.format(v)
savename = 'Riboswitch_list_{1}_{0}'.format(rfid, k)
structs, rutils.family_clustered_suboptimals(rfid=rfid,
savename=savename,
draw=True)
def make_ribostructs():
for k,v in rutils.switch_dicts().iteritems():
rfid = 'RF{0:05}'.format(v)
savename = 'Riboswitch_list_{1}_{0}'.format(rfid,k)
structs, rutils.family_clustered_suboptimals(rfid =rfid,savename = savename, draw = True)