def main(opt):
logging.getLogger().setLevel(logging.DEBUG if opt.v else logging.INFO)
base_dict = dict(t_path=opt.t_path,
lazy_wl=opt.lazy_wl,
sada=False,
space_usage=False,
time_usage=False,
answer=True,
load_cst=opt.load_cst,
runs_progress=opt.runs_progress,
ms_progress=opt.ms_progress)
base_dir = os.path.dirname(opt.t_path)
out_paths = []
for i, s_path in enumerate(
glob.glob(base_dir + "/" + opt.species + "*.juststring")):
out_path = "%s__%s" % (opt.t_path.replace(".juststring", ""),
os.path.basename(
s_path.replace(".juststring", "")))
command = MsInterface.ms_command_from_dict(
dict(s_path=s_path, out_path=out_path, **base_dict))
print command
def main(opt):
logging.getLogger().setLevel(logging.DEBUG if opt.v else logging.INFO)
LG.debug("running on S=%s, T=%s", opt.s_path, opt.t_path)
command = MsInterface.ms_command_from_dict(vars(opt))
LG.debug("running: " + str(command))
subprocess.check_call(command, shell=True)