def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.randomizer = Randomizer(Random())
selector_configuration = [
EvolutionRandomSelectorConfiguration.create(),
EvolutionRouletteSelectorConfiguration.create()
]
self.configuration = EvolutionConfiguration.create(
selector_configuration, inversion_chance=0, mutation_chance=0, crossover_chance=0)
self.create_rule_population()
self.create_grammar_statistics()
self.create_rule_adding()
self.sut = EvolutionService(self.randomizer)
self.rules = [
Rule(Symbol('S'), Symbol('NP'), Symbol('VP')),
Rule(Symbol('VP'), Symbol('VP'), Symbol('PP')),
Rule(Symbol('VP'), Symbol('V'), Symbol('NP')),
TerminalRule(Symbol('VP'), Symbol('eats')),
Rule(Symbol('PP'), Symbol('P'), Symbol('NP')),
Rule(Symbol('NP'), Symbol('Det'), Symbol('N')),
TerminalRule(Symbol('NP'), Symbol('she')), TerminalRule(Symbol('V'), Symbol('eats')),
TerminalRule(Symbol('P'), Symbol('with')), TerminalRule(Symbol('N'), Symbol('fish')),
TerminalRule(Symbol('N'), Symbol('fork')), TerminalRule(Symbol('Det'), Symbol('a'))
]
def init_globals():
g.randomizer = Randomizer()
g.debug = Debugger()
g.console = Console()
g.analyzer = Analyzer()
g.modeller = Modeller(g.analyzer)
g.gui = GUI(plotter, g.analyzer, g.modeller)
g.output_file_formatter = OutputFileFormatter()
def __init__(self, analyzer):
self.debug = Debugger()
self.randomizer = Randomizer()
self.analyzer = analyzer
self.data = None
self.linear_models = []
self.logistic_models = []
self.ridge_models = []
g.debug.prn(self, 'Modeller object created.')
def __init__(self, analyzer):
self.debug = Debugger()
self.randomizer = Randomizer()
self.analyzer = analyzer
self.data = None
self.linear_models = []
class TestEvolution(unittest.TestCase):
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.randomizer = Randomizer(Random())
selector_configuration = [
EvolutionRandomSelectorConfiguration.create(),
EvolutionRouletteSelectorConfiguration.create()
]
self.configuration = EvolutionConfiguration.create(
selector_configuration, inversion_chance=0, mutation_chance=0, crossover_chance=0)
self.create_rule_population()
self.create_grammar_statistics()
self.create_rule_adding()
self.sut = EvolutionService(self.randomizer)
self.rules = [
Rule(Symbol('S'), Symbol('NP'), Symbol('VP')),
Rule(Symbol('VP'), Symbol('VP'), Symbol('PP')),
Rule(Symbol('VP'), Symbol('V'), Symbol('NP')),
TerminalRule(Symbol('VP'), Symbol('eats')),
Rule(Symbol('PP'), Symbol('P'), Symbol('NP')),
Rule(Symbol('NP'), Symbol('Det'), Symbol('N')),
TerminalRule(Symbol('NP'), Symbol('she')), TerminalRule(Symbol('V'), Symbol('eats')),
TerminalRule(Symbol('P'), Symbol('with')), TerminalRule(Symbol('N'), Symbol('fish')),
TerminalRule(Symbol('N'), Symbol('fork')), TerminalRule(Symbol('Det'), Symbol('a'))
]
def create_rule_population(self):
self.starting_symbol = Symbol('S')
self.rule_population = RulePopulation(self.starting_symbol)
def create_grammar_statistics(self):
configuration = ClassicalStatisticsConfiguration.default()
configuration.base_fitness = 5
configuration.classical_fitness_weight = 1
configuration.fertility_weight = 1
configuration.positive_weight = 1
configuration.negative_weight = 1
self.grammar_statistics = GrammarStatistics(
configuration, self.randomizer, ClassicRuleStatistics(),
ClassicFitness())
def create_rule_adding(self):
configuration = AddingRulesConfiguration.create(
crowding_factor=2,
crowding_size=3,
elitism_size=2,
max_non_terminal_rules=19
)
adding_strategies = [SimpleAddingRuleStrategy(),
AddingRuleWithCrowdingStrategy(),
AddingRuleWithElitismStrategy()]
self.rule_adding = AddingRuleSupervisor(self.randomizer, configuration, adding_strategies)
def simulate_induction_part_work(self, rules):
for rule in rules:
self.rule_adding.add_rule(rule, self.rule_population, self.grammar_statistics)
for rule in rules:
rule_usage_info = ClassicRuleUsageInfo(True, 1)
positive_usages = self.randomizer.randint(1, 4)
for _ in range(positive_usages):
self.grammar_statistics.on_rule_usage(rule, rule_usage_info)
rule_usage_info.positive_sentence = False
self.grammar_statistics.on_rule_usage(rule, rule_usage_info)
self.grammar_statistics.fitness.get(self.grammar_statistics, rule)
def get_symbols_from_rules(self, rules):
return {y for y in chain.from_iterable(
(x.parent, x.left_child, x.right_child) for x in rules)}
def assert_contains_rules(self, rules, rules_pool):
for rule in rules:
assert_that(rules_pool, has_item(rule))
def count_rules_that_has_changed(self, old):
changed_rules = 0
for rule in self.rule_population.get_all_non_terminal_rules():
changed_rules += 1 if rule not in old else 0
return changed_rules
def test_given_no_operator_used_rule_population_should_remain_unchanged(self):
# Given:
self.simulate_induction_part_work(self.rules)
old_population = copy.deepcopy(self.rule_population)
# When:
self.sut.run_genetic_algorithm(self.grammar_statistics, self.rule_population,
self.rule_adding, self.configuration)
# Then:
self.assert_contains_rules(self.rule_population.get_all_non_terminal_rules(),
list(old_population.get_all_non_terminal_rules()))
old_symbols = self.get_symbols_from_rules(old_population.get_all_non_terminal_rules())
new_symbols = self.get_symbols_from_rules(self.rule_population.get_all_non_terminal_rules())
assert_that(old_symbols, has_items(*new_symbols))
def promote_those_rules_to_elite(self, rules):
for rule in rules:
rule_usage_info = ClassicRuleUsageInfo(True, 1)
positive_usages = 5
for _ in range(positive_usages):
self.grammar_statistics.on_rule_usage(rule, rule_usage_info)
def test_given_high_operator_usage_rule_population_should_expect_some_major_change(self):
# Given:
self.configuration.operators.inversion.chance = 1
self.configuration.operators.mutation.chance = 1
self.configuration.operators.crossover.chance = 1
self.simulate_induction_part_work(self.rules)
self.promote_those_rules_to_elite(self.rules[0:2])
elite = list(self.rules[0:2])
old_population = copy.deepcopy(self.rule_population)
# When:
self.sut.run_genetic_algorithm(self.grammar_statistics, self.rule_population,
self.rule_adding, self.configuration)
# Then:
self.assert_contains_rules(elite, list(old_population.get_all_non_terminal_rules()))
assert_that(self.count_rules_that_has_changed(old_population.get_all_non_terminal_rules()),
is_(greater_than_or_equal_to(2)))
old_symbols = self.get_symbols_from_rules(old_population.get_all_non_terminal_rules())
new_symbols = self.get_symbols_from_rules(self.rule_population.get_all_non_terminal_rules())
assert_that(old_symbols, not_(has_items(*new_symbols)))