Python parse_data_file Exemples

Exemple #1

Fichier : test_vcf_to_fasta.py Projet : johnchase/wilder_lab

 def test_parse_data_file(self):
     actual = list(parse_data_file(self.example_file1))
     expected =  [('10', '89623323', 'G', 'A', [('HG00096',[0,0]), ('HG00097', [0,0]), ('HG00099', [0,0]), ('HG00100', [0,0]), ('HG00101', [0,0])])]
     self.assertEqual(actual, expected)

Exemple #2

Fichier : test_vcf_to_fasta.py Projet : johnchase/wilder_lab

 def test_parse_data_file_2(self): 
     actual = list(parse_data_file(self.example_file2))
     expected = [('10', '89674917', 'T', 'G', [('HG00096', [0, 0]), ('HG00097', [0, 0]), ('HG00099', [0, 0]), ('HG00100', [0, 0]), ('HG00101', [0, 0]), ('HG00102', [0, 0]), ('HG00103', [0, 0]), ('HG00104', [0, 0]), ('HG00106', [0, 0]), ('HG00108', [0, 0]), ('HG00109', [0, 0]), ('HG00110', [0, 0])]), ('10', '89674997', 'A', 'G', [('HG00096', [0, 0]), ('HG00097', [0, 0]), ('HG00099', [0, 0]), ('HG00100', [0, 0]), ('HG00101', [0, 0]), ('HG00102', [0, 0]), ('HG00103', [0, 0]), ('HG00104', [0, 0]), ('HG00106', [0, 0]), ('HG00108', [0, 0]), ('HG00109', [0, 0]), ('HG00110', [0, 0])])]
     self.assertEqual(actual, expected)