#!/usr/bin/env python
from os.path import join
from setuptools import setup
import versionpy
package_name = 'nag'
version = versionpy.get_version(package_name)
setup(
name=package_name,
version=version,
author='Vlad Saveliev',
description='UMCCR neoantigens calling pipeline',
keywords='bioinformatics',
license='GPLv3',
packages=[package_name],
scripts=[
join('scripts', 'pizzly_to_bedpe.py'),
join('scripts', 'nag'),
],
include_package_data=True,
)
#!/usr/bin/env python
import sys
from os.path import join
from setuptools import setup
import versionpy
import ngs_utils
package_name = ngs_utils.__name__
version = versionpy.get_version(package_name)
setup(
name=package_name,
version=version,
author='Vlad Saveliev',
author_email='*****@*****.**',
description='Utils for NGS pipelines by Vlad Saveliev',
keywords='bioinformatics',
url='https://github.com/vladsaveliev/NGS_Utils',
license='GPLv3',
packages=[
package_name,
],
package_data={
package_name: versionpy.find_package_files('', package_name, skip_exts=['.sass', '.coffee'])
},
include_package_data=True,
zip_safe=False,
install_requires=versionpy.get_reqs(),
setup_requires=['numpy'],
scripts=[path for path in
#!/usr/bin/env python
from setuptools import setup
import versionpy
import hpc_utils
pkg = hpc_utils.__name__
version = versionpy.get_version(pkg)
setup(
name=pkg,
version=version,
author='Vlad Saveliev',
author_email='*****@*****.**',
description=
'Cluster utils and paths to the reference data in UMCCR servers',
keywords='bioinformatics',
url='https://github.com/umccr/' + pkg,
license='GPLv3',
packages=[
pkg,
],
package_data={
pkg: versionpy.find_package_files('', pkg),
},
include_package_data=True,
zip_safe=False,
install_requires=versionpy.get_reqs(),
)
#!/usr/bin/env python
from setuptools import setup, find_packages
from versionpy import get_version, find_package_files
pkg = 'umccrise'
version = get_version(pkg)
setup(
name='umccrise',
version=version,
author='Vlad Saveliev',
author_email='*****@*****.**',
description='UMCCRisation of bcbio-nextgen analysis results',
keywords='bioinformatics',
url='https://github.com/umccr/umccrise',
license='GPLv3',
package_data={
pkg: find_package_files('', pkg),
},
packages=find_packages(),
scripts=[
'vendor/vcfToBedpe',
'scripts/umccrise',
'scripts/pcgr',
'scripts/conpair',
'scripts/gpl.py',
'scripts/gridss.py',
'scripts/umccrise_refdata_pull',
],
include_package_data=True,