for f in fileList[1:]:
f = fileList[0]+'/'+f
aviProps = va.getAVIinfo(f)
if nfile==1:
startFrame = va.time2frame(int(times[0]), aviProps)
else:
startFrame = va.time2frame(0, aviProps)
if nfile==len(fileList[1:]):
endFrame = va.time2frame(int(times[1]), aviProps)
if endFrame>aviProps[6]: endFrame=aviProps[6]
else:
endFrame = aviProps[6]
if mode=='local':
framesPerCpu = np.ceil(float(endFrame-startFrame))
secPerCpu = va.frame2time(framesPerCpu, aviProps)
else:
framesPerCpu = np.ceil(float(endFrame-startFrame)/cpus)
secPerCpu = va.frame2time(framesPerCpu, aviProps)
#if secPerCpu < minCpuTime:
# secPerCpu = minCpuTime
# cpus = int(np.ceil((endFrame-startFrame)/float(va.time2frame(secPerCpu, aviProps))))
#print 'corrected cpus =', cpus
if mode=='local':
os.system('export SGE_TASK_ID=1')
script = 'job.sh '+f+' '+activeDir+'/ '+str(startFrame)+' '+str(nfile)+' '+str(secPerCpu)
else:
#filename saveDir startFrame nfile ncall secPerCpu
#script = 'qsub -t 1-'+str(cpus)+' -l node_type=m620+ -N job_1 -o /dev/null -e /dev/null job.sh '+f+' '+activeDir+'/ '+str(startFrame)+' '+str(nfile)+' '+str(secPerCpu)
script = 'qsub -t 1-'+str(cpus)+' -N job_1 -o /dev/null -e /dev/null job.sh '+f+' '+activeDir+'/ '+str(startFrame)+' '+str(nfile)+' '+str(secPerCpu)
for f in fileList[1:]:
f = fileList[0] + '/' + f
aviProps = va.getAVIinfo(f)
if nfile == 1:
startFrame = va.time2frame(int(times[0]), aviProps)
else:
startFrame = va.time2frame(0, aviProps)
if nfile == len(fileList[1:]):
endFrame = va.time2frame(int(times[1]), aviProps)
if endFrame > aviProps[6]: endFrame = aviProps[6]
else:
endFrame = aviProps[6]
if mode == 'local':
framesPerCpu = np.ceil(float(endFrame - startFrame))
secPerCpu = va.frame2time(framesPerCpu, aviProps)
else:
framesPerCpu = np.ceil(float(endFrame - startFrame) / cpus)
secPerCpu = va.frame2time(framesPerCpu, aviProps)
#if secPerCpu < minCpuTime:
# secPerCpu = minCpuTime
# cpus = int(np.ceil((endFrame-startFrame)/float(va.time2frame(secPerCpu, aviProps))))
#print 'corrected cpus =', cpus
if mode == 'local':
os.system('export SGE_TASK_ID=1')
script = 'job.sh ' + f + ' ' + activeDir + '/ ' + str(
startFrame) + ' ' + str(nfile) + ' ' + str(secPerCpu)
else:
#filename saveDir startFrame nfile ncall secPerCpu
#script = 'qsub -t 1-'+str(cpus)+' -l node_type=m620+ -N job_1 -o /dev/null -e /dev/null job.sh '+f+' '+activeDir+'/ '+str(startFrame)+' '+str(nfile)+' '+str(secPerCpu)
nfile = '0' + nfile
if len(ncall) == 1:
ncall = '00' + ncall
elif len(ncall) == 2:
ncall = '0' + ncall
secPerCpu = float(sys.argv[6])
nestThreshold = 10
aviProps = va.getAVIinfo(fname)
print fname, aviProps
fileName = va.getFileName(fname)
trackFname = saveDir + 'file' + str(nfile) + '_' + ncall + '.txt'
aviFname = saveDir + 'file' + str(nfile) + '_' + ncall + '.avi'
bgSubFname = saveDir + 'file' + str(nfile) + '_' + ncall
tStart = va.frame2time(startFrame, aviProps) + (int(ncall) - 1) * secPerCpu
tEnd = tStart + secPerCpu
print tStart, tEnd
while True:
try:
print(saveDir + "bg.npy")
bg = np.load(saveDir + "bg.npy")
print("Background file loaded")
except IOError:
print("Cannot find background file ")
break
try:
pmts = np.load(saveDir + "pmts.npy")
print("Parameters file loaded")
except IOError:
nfile='0'+nfile
if len(ncall)==1:
ncall='00'+ncall
elif len(ncall)==2:
ncall='0'+ncall
secPerCpu = float(sys.argv[6])
nestThreshold = 10
aviProps = va.getAVIinfo(fname)
print fname, aviProps
fileName = va.getFileName(fname)
trackFname = saveDir + 'file' + str(nfile) + '_' + ncall + '.txt'
aviFname = saveDir + 'file' + str(nfile) + '_' + ncall + '.avi'
bgSubFname = saveDir + 'file' + str(nfile) + '_' + ncall
tStart = va.frame2time(startFrame, aviProps) + (int(ncall)-1)*secPerCpu
tEnd = tStart + secPerCpu
print tStart, tEnd
while True:
try:
print(saveDir+"bg.npy")
bg = np.load(saveDir + "bg.npy")
print("Background file loaded")
except IOError:
print("Cannot find background file ")
break
try:
pmts = np.load(saveDir + "pmts.npy")
print("Parameters file loaded")
except IOError: