Exemple #1
0
for f in fileList[1:]:
  f = fileList[0]+'/'+f
  aviProps = va.getAVIinfo(f)
  if nfile==1:
      startFrame = va.time2frame(int(times[0]), aviProps)
  else:
      startFrame = va.time2frame(0, aviProps)
  if nfile==len(fileList[1:]):
      endFrame = va.time2frame(int(times[1]), aviProps)
      if endFrame>aviProps[6]: endFrame=aviProps[6]
  else:
      endFrame = aviProps[6]
  
  if mode=='local':
      framesPerCpu = np.ceil(float(endFrame-startFrame))
      secPerCpu = va.frame2time(framesPerCpu, aviProps)
  else:
      framesPerCpu = np.ceil(float(endFrame-startFrame)/cpus)
      secPerCpu = va.frame2time(framesPerCpu, aviProps)

  #if secPerCpu < minCpuTime: 
  #    secPerCpu = minCpuTime
  #    cpus = int(np.ceil((endFrame-startFrame)/float(va.time2frame(secPerCpu, aviProps))))
      #print 'corrected cpus =', cpus
  if mode=='local':
      os.system('export SGE_TASK_ID=1')
      script = 'job.sh '+f+' '+activeDir+'/ '+str(startFrame)+' '+str(nfile)+' '+str(secPerCpu)
  else:
      #filename saveDir startFrame nfile ncall secPerCpu
      #script =  'qsub -t 1-'+str(cpus)+' -l node_type=m620+ -N job_1 -o /dev/null -e /dev/null job.sh '+f+' '+activeDir+'/ '+str(startFrame)+' '+str(nfile)+' '+str(secPerCpu)
      script =  'qsub -t 1-'+str(cpus)+' -N job_1 -o /dev/null -e /dev/null job.sh '+f+' '+activeDir+'/ '+str(startFrame)+' '+str(nfile)+' '+str(secPerCpu)
Exemple #2
0
for f in fileList[1:]:
    f = fileList[0] + '/' + f
    aviProps = va.getAVIinfo(f)
    if nfile == 1:
        startFrame = va.time2frame(int(times[0]), aviProps)
    else:
        startFrame = va.time2frame(0, aviProps)
    if nfile == len(fileList[1:]):
        endFrame = va.time2frame(int(times[1]), aviProps)
        if endFrame > aviProps[6]: endFrame = aviProps[6]
    else:
        endFrame = aviProps[6]

    if mode == 'local':
        framesPerCpu = np.ceil(float(endFrame - startFrame))
        secPerCpu = va.frame2time(framesPerCpu, aviProps)
    else:
        framesPerCpu = np.ceil(float(endFrame - startFrame) / cpus)
        secPerCpu = va.frame2time(framesPerCpu, aviProps)

    #if secPerCpu < minCpuTime:
    #    secPerCpu = minCpuTime
    #    cpus = int(np.ceil((endFrame-startFrame)/float(va.time2frame(secPerCpu, aviProps))))
    #print 'corrected cpus =', cpus
    if mode == 'local':
        os.system('export SGE_TASK_ID=1')
        script = 'job.sh ' + f + ' ' + activeDir + '/ ' + str(
            startFrame) + ' ' + str(nfile) + ' ' + str(secPerCpu)
    else:
        #filename saveDir startFrame nfile ncall secPerCpu
        #script =  'qsub -t 1-'+str(cpus)+' -l node_type=m620+ -N job_1 -o /dev/null -e /dev/null job.sh '+f+' '+activeDir+'/ '+str(startFrame)+' '+str(nfile)+' '+str(secPerCpu)
    nfile = '0' + nfile
if len(ncall) == 1:
    ncall = '00' + ncall
elif len(ncall) == 2:
    ncall = '0' + ncall
secPerCpu = float(sys.argv[6])

nestThreshold = 10
aviProps = va.getAVIinfo(fname)
print fname, aviProps
fileName = va.getFileName(fname)
trackFname = saveDir + 'file' + str(nfile) + '_' + ncall + '.txt'
aviFname = saveDir + 'file' + str(nfile) + '_' + ncall + '.avi'
bgSubFname = saveDir + 'file' + str(nfile) + '_' + ncall

tStart = va.frame2time(startFrame, aviProps) + (int(ncall) - 1) * secPerCpu
tEnd = tStart + secPerCpu
print tStart, tEnd
while True:
    try:
        print(saveDir + "bg.npy")
        bg = np.load(saveDir + "bg.npy")
        print("Background file loaded")
    except IOError:
        print("Cannot find background file ")
        break

    try:
        pmts = np.load(saveDir + "pmts.npy")
        print("Parameters file loaded")
    except IOError:
    nfile='0'+nfile
if len(ncall)==1: 
    ncall='00'+ncall
elif len(ncall)==2:
    ncall='0'+ncall
secPerCpu = float(sys.argv[6])

nestThreshold = 10
aviProps = va.getAVIinfo(fname)
print fname, aviProps
fileName = va.getFileName(fname)
trackFname = saveDir + 'file' + str(nfile) + '_' + ncall + '.txt'
aviFname = saveDir + 'file' + str(nfile) + '_' + ncall + '.avi'
bgSubFname = saveDir + 'file' + str(nfile) + '_' + ncall

tStart = va.frame2time(startFrame, aviProps) + (int(ncall)-1)*secPerCpu
tEnd = tStart + secPerCpu
print tStart, tEnd
while True:
  try:
      print(saveDir+"bg.npy")
      bg = np.load(saveDir + "bg.npy")
      print("Background file loaded")
  except IOError:
      print("Cannot find background file ")
      break

  try:
      pmts = np.load(saveDir + "pmts.npy")
      print("Parameters file loaded")
  except IOError: