def plot_poim(self, mode, Q, tofile):
'''
plot poim to file
:param mode:
1 - plot poim
2 - plot diffPOIM
:param Q: poim
:param tofile: path to file
:return: -
'''
if mode == 1:
view.figurepoimsimple(Q, tofile, False)
if mode == 2:
view.figuremaxPOIM(Q, tofile, False)
def plot_poim(self, tofile):
view.figurepoimsimple(self.gPOIM, tofile, show=False)
if __name__ == '__main__':
#datapath = "/Users/marinavidovic/Documents/work/POIM/data/human_acceptor_splice_data.txt"
#savepath = "/Users/marinavidovic/Documents/work/POIM/data/human_acceptor_splice_data_xy.pkl"
#poimfolder = "/Users/marinavidovic/Documents/work/POIM/data/human_acceptor_splice_data"
#poimpath = "/Users/marinavidovic/Documents/work/POIM/data/human_acceptor_splice_data"+str(lines)+".pkl"
#path = "/Users/marinavidovic/Documents/work/POIM/experiments/" + experiment_name + "/"
#read data
experiment_name = "toy1"
if not os.path.exists(experiment_name):
os.makedirs(experiment_name)
poimpath=experiment_name+"poim.pkl"
tally=30
positives=25
sequenceno=100
mutation_prob=0.0
motif="ATTTT"
mu=13
x,y = makePOIM.gensequences(tally,positives,sequenceno,mutation_prob,motif,mu)
#compute POIM
poim_degree = 6
kernel_degree = 8
print "start poim computation"
poims = makePOIM.computePOIM(x,y,poim_degree,kernel_degree,poimpath)
Q2 = poims[0][1]
#view.test()
view.figurepoimsimple(Q2, "poim_pic", 0)