def main():
parser = argparse.ArgumentParser(description=__doc__)
parser.add_argument("--show", "--plot", action="store_true")
args = vutil.common_argparse(parser)
####### test binary files
f_bin = viscid.load_file(_viscid_root + "/../sample/ath_sample.*.bin")
for i, grid in enumerate(f_bin.iter_times(":")):
plt.subplot2grid((2, 2), (0, i))
mpl.plot(grid["bx"])
plt.subplot2grid((2, 2), (1, i))
mpl.plot(grid["by"])
if args.show:
mpl.tighten()
mpl.mplshow()
plt.clf()
####### test ascii files
f_tab = viscid.load_file(_viscid_root + "/../sample/ath_sample.*.tab")
for i, grid in enumerate(f_tab.iter_times(":")):
plt.subplot2grid((2, 2), (0, i))
mpl.plot(grid["bx"])
plt.subplot2grid((2, 2), (1, i))
mpl.plot(grid["by"])
if args.show:
mpl.tighten()
mpl.mplshow()
plt.clf()
def main():
parser = argparse.ArgumentParser(description=__doc__)
parser.add_argument("--show", "--plot", action="store_true")
args = vutil.common_argparse(parser)
####### test binary files
f_bin = viscid.load_file(sample_dir + '/ath_sample.*.bin')
for i, grid in enumerate(f_bin.iter_times(":")):
plt.subplot2grid((2, 2), (0, i))
mpl.plot(grid['bx'])
plt.subplot2grid((2, 2), (1, i))
mpl.plot(grid['by'])
mpl.plt.suptitle("athena bin (binary) files")
mpl.auto_adjust_subplots(subplot_params=dict(top=0.9))
mpl.plt.savefig(next_plot_fname(__file__))
if args.show:
mpl.show()
plt.clf()
####### test ascii files
f_tab = viscid.load_file(sample_dir + '/ath_sample.*.tab')
for i, grid in enumerate(f_tab.iter_times(":")):
plt.subplot2grid((2, 2), (0, i))
mpl.plot(grid['bx'])
plt.subplot2grid((2, 2), (1, i))
mpl.plot(grid['by'])
mpl.plt.suptitle("athena tab (ascii) files")
mpl.auto_adjust_subplots(subplot_params=dict(top=0.9))
mpl.plt.savefig(next_plot_fname(__file__))
if args.show:
mpl.show()
plt.clf()
def main():
parser = argparse.ArgumentParser(description="Streamline a PSC file")
parser.add_argument("-t", default="2000",
help="which time to plot (finds closest)")
parser.add_argument('infile', nargs=1, help='input file')
args = vutil.common_argparse(parser)
# f = readers.load_file("pfd.020000.xdmf")
# ... or ...
# using this way of loading files, one probably wants just to give
# pfd.xdmf to the command line
f = readers.load_file(args.infile[0])
f.activate_time(args.t)
jz = f["jz"]
# recreate hx as a field of 0 to keep streamlines from moving in
# that direction
hx = field.zeros_like(jz, name="hx")
h1 = field.scalar_fields_to_vector([hx, f["hy"], f["hz"]], name="H",
_force_layout="Interlaced",
forget_source=True)
e = field.scalar_fields_to_vector([f["ex"], f["ey"], f["ez"]], name="E",
_force_layout="Interlaced",
forget_source=True)
# plot magnetic fields, just a sanity check
# ax1 = plt.subplot(211)
# mpl.plot(f["hy"], flip_plot=True)
# ax2 = plt.subplot(212, sharex=ax1, sharey=ax1)
# mpl.plot(f["hz"], flip_plot=True)
# mpl.mplshow()
# make a line of 30 seeds straight along the z axis (x, y, z ordered)
seeds1 = seed.Line((0.0, 0.0, 2.0), (1022.0, 0.0, 0.0), 60)
# set outer boundary limits for streamlines
ds = 0.005 # spatial step along the stream line curve
obound0 = np.array([1, -128, -1000], dtype=h1.dtype)
obound1 = np.array([1023, 128, 1000], dtype=h1.dtype)
# calc the streamlines
lines1, topo1 = streamline.streamlines(h1, seeds1, ds0=ds, maxit=200000,
obound0=obound0, obound1=obound1,
ibound=0.0)
# run with -v to see this
logger.info("Topology flags: {0}".format(topo1))
# rotate plot puts the z axis along the horizontal
flip_plot = True
mpl.plot(jz, flip_plot=flip_plot, plot_opts="lin_-.05_.05")
# mpl.plot_streamlines2d(lines1, "x", flip_plot=flip_plot, color='k')
plt.xlim([0, 1024])
plt.ylim([-128, 128])
plt.show()
# interpolate e onto each point of the first field line of lines1
e1 = cycalc.interp_trilin(e, seed.Point(lines1[0]))
print(e1.shape, lines1[0].shape)
plt.clf()
plt.plot(np.linspace(0, ds * e1.shape[0], e1.shape[0]), e1[:, 0])
plt.xlabel("length along field line")
plt.ylabel("Ex")
plt.show()
return 0