else:
same_annotations.append(
DBAnnotation.update_version(annotation, translate_dict))
return same_annotations
def update_workflow(old_obj, translate_dict):
return DBWorkflow.update_version(old_obj.db_workflow, translate_dict)
translate_dict = {'DBGroup': {'workflow': update_workflow},
'DBVistrail': {'tags': update_tags,
'actions': update_actions},
'DBAction': {'annotations': update_annotations},
'DBParameter': {'type': update_type},
}
_vistrail.update_id_scope()
vistrail = DBVistrail.update_version(_vistrail, translate_dict)
id_scope = vistrail.idScope
id_scope.setBeginId('annotation', _vistrail.idScope.getNewId('annotation'))
key_lists = {'__tag__': tag_annotations,
'__notes__': notes_annotations,
'__thumb__': thumb_annotations,
'__upgrade__': upgrade_annotations,
'__prune__': prune_annotations}
for key, annotations in key_lists.iteritems():
for action_id, value, new_id in annotations:
if new_id is None:
new_id = id_scope.getNewId(DBActionAnnotation.vtType)
annotation = DBActionAnnotation(id=new_id,
action_id=action_id,
key=key,
'DBGroup': {
'workflow': update_workflow
},
'DBVistrail': {
'tags': update_tags,
'actions': update_actions
},
'DBAction': {
'annotations': update_annotations
},
'DBParameter': {
'type': update_type
},
}
_vistrail.update_id_scope()
vistrail = DBVistrail.update_version(_vistrail, translate_dict)
id_scope = vistrail.idScope
id_scope.setBeginId('annotation', _vistrail.idScope.getNewId('annotation'))
key_lists = {
'__tag__': tag_annotations,
'__notes__': notes_annotations,
'__thumb__': thumb_annotations,
'__upgrade__': upgrade_annotations,
'__prune__': prune_annotations
}
for key, annotations in key_lists.iteritems():
for action_id, value, new_id in annotations:
if new_id is None:
new_id = id_scope.getNewId(DBActionAnnotation.vtType)
annotation = DBActionAnnotation(id=new_id,
def translateVistrail(_vistrail):
""" Translate new DBVistrailVariable based vistrail variables to old
annotation based type """
global id_scope
def update_workflow(old_obj, trans_dict):
return DBWorkflow.update_version(old_obj.db_workflow,
trans_dict, DBWorkflow())
def update_operations(old_obj, trans_dict):
new_ops = []
for obj in old_obj.db_operations:
if obj.vtType == 'delete':
new_ops.append(DBDelete.update_version(obj, trans_dict))
elif obj.vtType == 'add':
if obj.db_what == 'portSpec':
trans_dict['DBAdd'] = {'data': update_portSpec_op}
new_op = DBAdd.update_version(obj, trans_dict)
new_ops.append(new_op)
del trans_dict['DBAdd']
else:
new_op = DBAdd.update_version(obj, trans_dict)
new_ops.append(new_op)
elif obj.vtType == 'change':
if obj.db_what == 'portSpec':
trans_dict['DBChange'] = {'data': update_portSpec_op}
new_op = DBChange.update_version(obj, trans_dict)
new_ops.append(new_op)
del trans_dict['DBChange']
else:
new_op = DBChange.update_version(obj, trans_dict)
new_ops.append(new_op)
return new_ops
vistrail = DBVistrail()
id_scope = vistrail.idScope
def update_annotations(old_obj, trans_dict):
new_annotations = []
for a in old_obj.db_annotations:
new_annotations.append(DBAnnotation.update_version(a,
translate_dict))
id_scope.updateBeginId(DBAnnotation.vtType, a.db_id)
vars = {}
for var in old_obj.db_vistrailVariables:
descriptor = (var.db_package, var.db_module, var.db_namespace)
vars[var.db_name] = (var.db_uuid, descriptor, var.db_value)
if vars:
new_id = id_scope.getNewId(DBAnnotation.vtType)
annotation = DBAnnotation(id=new_id, key='__vistrail_vars__',
value=str(vars))
new_annotations.append(annotation)
return new_annotations
translate_dict = {'DBModule': {'portSpecs': update_portSpecs},
'DBModuleDescriptor': {'portSpecs': update_portSpecs},
'DBAction': {'operations': update_operations},
'DBGroup': {'workflow': update_workflow},
'DBVistrail': {'annotations': update_annotations},
}
vistrail = DBVistrail.update_version(_vistrail, translate_dict, vistrail)
if _vistrail.db_parameter_explorations:
debug.warning(("Vistrail contains %s parameter explorations that "
"cannot be converted") % len(_vistrail.db_parameter_explorations))
vistrail.db_version = '1.0.2'
return vistrail
