# Currently assuming that this is the region numbers that were produced by coloring!
# TODO: If necessary, get from array to be more robust.
region_ids = (0, 1)
# Extract each surface in turn to find the smallest one
subsurfaces = {}
for k in region_ids:
connectivityFilter = vtk.vtkPolyDataConnectivityFilter()
connectivityFilter.SetInputData(self.ColoredSurface)
connectivityFilter.SetExtractionModeToSpecifiedRegions()
connectivityFilter.AddSpecifiedRegion(k)
connectivityFilter.ColorRegionsOff()
connectivityFilter.SetScalarConnectivity(0)
connectivityFilter.Update()
subsurfaces[k] = connectivityFilter.GetOutput()
# The inner surface has smaller bounds
if bnorm(subsurfaces[region_ids[0]]) < bnorm(subsurfaces[region_ids[1]]):
self.InnerRegionId = region_ids[0]
self.OuterRegionId = region_ids[1]
else:
self.InnerRegionId = region_ids[1]
self.OuterRegionId = region_ids[0]
self.InnerSurface = subsurfaces[self.InnerRegionId]
self.OuterSurface = subsurfaces[self.OuterRegionId]
if __name__ == '__main__':
main = pypes.pypeMain()
main.Arguments = sys.argv
main.Execute()
def Execute(self):
if self.Centerlines == None:
self.PrintError('Error: No input centerlines.')
centerlineBranchGeometry = vtkvmtk.vtkvmtkCenterlineBranchGeometry()
centerlineBranchGeometry.SetInputData(self.Centerlines)
centerlineBranchGeometry.SetRadiusArrayName(self.RadiusArrayName)
centerlineBranchGeometry.SetGroupIdsArrayName(self.GroupIdsArrayName)
centerlineBranchGeometry.SetBlankingArrayName(self.BlankingArrayName)
centerlineBranchGeometry.SetLengthArrayName(self.LengthArrayName)
centerlineBranchGeometry.SetCurvatureArrayName(self.CurvatureArrayName)
centerlineBranchGeometry.SetTorsionArrayName(self.TorsionArrayName)
centerlineBranchGeometry.SetTortuosityArrayName(
self.TortuosityArrayName)
centerlineBranchGeometry.SetLineSmoothing(self.LineSmoothing)
centerlineBranchGeometry.SetNumberOfSmoothingIterations(
self.NumberOfSmoothingIterations)
centerlineBranchGeometry.SetSmoothingFactor(self.SmoothingFactor)
centerlineBranchGeometry.Update()
self.GeometryData = centerlineBranchGeometry.GetOutput()
if __name__ == '__main__':
main = pypes.pypeMain()
main.Arguments = sys.argv
main.Execute()
