def prepare_data(jobs):
output = ""
for job, variation in jobs:
model = CopasiModel(job.get_filename())
results = model.get_so_results()
for result in results:
output += "['" + result['name'] + "_max'," + str(variation) + "," + result['max_result'] + "],\n"
output += "['" + result['name'] + "_min'," + str(variation) + "," + result['min_result'] + "],\n"
return output
def prepare_data(jobs):
output = ""
for job, variation in jobs:
model = CopasiModel(job.get_filename())
results = model.get_so_results()
for result in results:
output += "['" + result['name'] + "_max'," + str(
variation) + "," + result['max_result'] + "],\n"
output += "['" + result['name'] + "_min'," + str(
variation) + "," + result['min_result'] + "],\n"
return output
#Collate the results
#Get the list of jobs marked as finished, waiting for processing
waiting = models.Job.objects.filter(status='W')
for job in waiting:
logging.debug('Processing results for complete job ' + str(job.id) + ', User: '******'SO':
#TODO: doesn't do validation step yet. This step should probably be condorised.
#Mark the job as complete
job.status='C'
job.finish_time=datetime.datetime.today()
job.last_update=datetime.datetime.today()
model.get_so_results(save=True)
try:
zip_up_dir(job)
except:
logging.exception('Exception: could not zip up job directory for job ' + str(job.id))
job.save()
try:
email_notify.send_email(job)
except:
logging.exception('Exception: error sending email')
elif job.job_type == 'SS':
#Collate the results, and ship them off in a new condor job to be averaged
#Use this to keep track of the number of jobs we split the task in to
condor_jobs = models.CondorJob.objects.filter(parent=job)
cj = model.prepare_ss_process_job(len(condor_jobs), job.runs, rank=job.rank)
#Submit the new job to condor
#Get the list of jobs marked as finished, waiting for processing
waiting = models.Job.objects.filter(status='W')
for job in waiting:
logging.debug('Processing results for complete job ' + str(job.id) +
', User: '******'SO':
#TODO: doesn't do validation step yet. This step should probably be condorised.
#Mark the job as complete
job.status = 'C'
job.finish_time = datetime.datetime.today()
job.last_update = datetime.datetime.today()
model.get_so_results(save=True)
try:
zip_up_dir(job)
except:
logging.exception(
'Exception: could not zip up job directory for job ' +
str(job.id))
job.save()
try:
email_notify.send_email(job)
except:
logging.exception('Exception: error sending email')
elif job.job_type == 'SS':
#Collate the results, and ship them off in a new condor job to be averaged
#Use this to keep track of the number of jobs we split the task in to
condor_jobs = models.CondorJob.objects.filter(parent=job)
