def generate_file_info(self, file_path):
info = self.webdavClient.info(file_path)
is_dir = False
is_link = False
if self.webdavClient.is_dir(file_path):
is_dir = True
else:
pass
file_name = urn.Urn(file_path).filename().replace("/", "")
file_dir = urn.Urn(file_path).parent()
ext = ''
divide = file_name.split('.')
if len(divide) > 1:
ext = file_name.split('.')[-1].lower()
mtime = info['modified']
file_info = {
"is_dir": is_dir,
"is_link": is_link,
"name": file_name,
"ext": ext,
"path": file_dir,
"owner": self.user,
"mode": "600",
"size": info['size'] if not is_dir else 0,
"mtime": mtime,
'mtime_str': str(mtime),
}
return file_info
def test_api_install_script(cerise_service, cerise_client, webdav_client):
job = _start_job(cerise_client, webdav_client, InstallScriptTestJob)
job = _wait_for_state(job.id, 10.0, 'DONE', cerise_client)
assert job.state == 'Success'
output_path = '/files/output/{}/output.txt'.format(job.id)
resource = wc.Resource(webdav_client, wu.Urn(output_path))
output_buffer = io.BytesIO()
resource.write_to(output_buffer)
assert output_buffer.getvalue() == b'Testing API installation\n'
def _start_job(cerise_client, webdav_client, job_fixture, test_name=None):
if test_name is None:
test_name = 'test_post_' + job_fixture.__name__
input_dir = '/files/input/{}'.format(test_name)
webdav_client.mkdir(input_dir)
if job_fixture.workflow is not None:
workflow_file = input_dir + '/workflow.cwl'
workflow_res = wc.Resource(webdav_client, wu.Urn(workflow_file))
workflow_res.read_from(io.BytesIO(job_fixture.workflow))
else:
workflow_file = ''
for input_file in job_fixture.local_input_files:
input_path = '{}/{}'.format(input_dir, input_file.location)
input_res = wc.Resource(webdav_client, wu.Urn(input_path))
if input_file.location in job_fixture.input_content:
input_res.read_from(
io.BytesIO(job_fixture.input_content[input_file.location]))
for secondary_file in input_file.secondary_files:
input_path = '{}/{}'.format(input_dir, secondary_file.location)
input_res = wc.Resource(webdav_client, wu.Urn(input_path))
if secondary_file.location in job_fixture.input_content:
input_res.read_from(
io.BytesIO(
job_fixture.input_content[secondary_file.location]))
input_dir_url = 'http://localhost:29593{}/'.format(input_dir)
input_text = job_fixture.local_input(input_dir_url)
input_data = json.loads(input_text)
JobDescription = cerise_client.get_model('job-description')
job_desc = JobDescription(name=test_name,
workflow='http://localhost:29593' +
workflow_file,
input=input_data)
job, response = cerise_client.jobs.post_job(body=job_desc).result()
assert response.status_code == 201
return job
def path(self, path):
return urn.Urn(path).path()
def parent(self, path):
return urn.Urn(path).parent()