def update_workflows(request):
"""
ajax function for updating available workflows from galaxy
"""
print "analysis_manager.views.update_workflows"
if request.is_ajax():
#print "is ajax"
workflow_engines = WorkflowEngine.objects.all()
workflows = 0
for engine in workflow_engines:
# function for updating workflows from galaxy instance
get_workflows(engine)
new_workflow_count = engine.workflow_set.all().count()
print "Engine: " + engine.name + " - " + str(
(new_workflow_count)) + ' workflows after.'
workflows += new_workflow_count
# getting updated available workflows
workflows = Workflow.objects.all()
json_serializer = serializers.get_serializer("json")()
return HttpResponse(json_serializer.serialize(workflows,
ensure_ascii=False),
mimetype='application/javascript')
else:
return HttpResponse(status=400)
def import_workflows(request):
workflow_engines = WorkflowEngine.objects.all()
workflows = 0
for engine in workflow_engines:
get_workflows(engine)
new_workflow_count = engine.workflow_set.all().count()
logger.debug("Engine: " + engine.name + " - " +
str(new_workflow_count) + ' workflows after.')
workflows += new_workflow_count
return HttpResponse(str(workflows) + ' workflows imported.')
def update_workflows(request):
"""ajax function for updating available workflows from galaxy"""
logger.debug("analysis_manager.views.update_workflows")
if request.is_ajax():
workflow_engines = WorkflowEngine.objects.all()
workflows = 0
for engine in workflow_engines:
# function for updating workflows from galaxy instance
get_workflows(engine)
new_workflow_count = engine.workflow_set.all().count()
logger.debug("Engine: %s - %s workflows after", engine.name,
str(new_workflow_count))
workflows += new_workflow_count
# getting updated available workflows
workflows = Workflow.objects.all()
json_serializer = serializers.get_serializer("json")()
return HttpResponse(json_serializer.serialize(workflows,
ensure_ascii=False),
content_type='application/javascript')
return HttpResponse(status=400)
def update_workflows(request):
"""ajax function for updating available workflows from galaxy"""
logger.debug("analysis_manager.views.update_workflows")
if request.is_ajax():
workflow_engines = WorkflowEngine.objects.all()
workflows = 0
for engine in workflow_engines:
# function for updating workflows from galaxy instance
get_workflows(engine)
new_workflow_count = engine.workflow_set.all().count()
logger.debug("Engine: %s - %s workflows after",
engine.name, str(new_workflow_count))
workflows += new_workflow_count
# getting updated available workflows
workflows = Workflow.objects.all()
json_serializer = serializers.get_serializer("json")()
return HttpResponse(
json_serializer.serialize(workflows, ensure_ascii=False),
mimetype='application/javascript')
else:
return HttpResponse(status=400)
def handle(self, **options):
workflow_engines = WorkflowEngine.objects.all()
workflows = 0
self.stdout.write("%d workflow engines found" %
workflow_engines.count())
for engine in workflow_engines:
self.stdout.write("Importing from workflow engine '%s' ..." %
engine.name)
old_workflow_count = engine.workflow_set.all().count()
engine_issues = get_workflows(engine)
if len(engine_issues) > 0:
self.stdout.write("\n".join(engine_issues))
new_workflow_count = engine.workflow_set.all().count()
self.stdout.write(
"%d workflows imported from engine '%s'..." %
(new_workflow_count-old_workflow_count, engine.name))
workflows += new_workflow_count - old_workflow_count
self.stdout.write("%d workflows imported from %d workflow engines" %
(workflows, workflow_engines.count()))
def handle(self, **options):
workflow_engines = WorkflowEngine.objects.all()
workflows = 0
self.stdout.write("%d workflow engines found" %
workflow_engines.count())
for engine in workflow_engines:
self.stdout.write("Importing from workflow engine '%s' ..." %
engine.name)
old_workflow_count = engine.workflow_set.all().count()
engine_issues = get_workflows(engine)
if len(engine_issues) > 0:
self.stdout.write("\n".join(engine_issues))
new_workflow_count = engine.workflow_set.all().count()
self.stdout.write(
"%d workflows imported from engine '%s'..." %
(new_workflow_count - old_workflow_count, engine.name))
workflows += new_workflow_count - old_workflow_count
self.stdout.write("%d workflows imported from %d workflow engines" %
(workflows, workflow_engines.count()))
def handle(self, **options):
"""
workflow_engine_objects = []
WorkflowEngine.objects.all().delete()
for instance in Instance.objects.all():
workflow_engine_object = WorkflowEngine.objects.create( instance=instance, name=instance.description, summary=instance.base_url + " " + instance.api_key )
# TODO: introduce group managers and assign ownership to them
workflow_engine_object.set_manager_group( ExtendedGroup.objects.public_group().manager_group )
#workflow_engine_object.share( ExtendedGroup.objects.public_group() )
workflow_engine_objects.append( workflow_engine_object )
for workflow_engine in workflow_engine_objects:
print(str(workflow_engine))
"""
workflow_engines = WorkflowEngine.objects.all()
workflows = 0
print str( workflow_engines.count() ) + " workflow engines found"
for engine in workflow_engines:
print "Importing from workflow engine \"" + engine.name + "\" ..."
old_workflow_count = engine.workflow_set.all().count()
engine_issues = get_workflows( engine );
if len( engine_issues ) > 0:
print "\n".join( engine_issues )
new_workflow_count = engine.workflow_set.all().count()
print str( ( new_workflow_count-old_workflow_count ) ) + " workflows imported from workflow \"" + engine.name + "\" ..."
workflows += (new_workflow_count-old_workflow_count)
print str( workflows ) + " workflows imported from " + str( workflow_engines.count() ) + " workflow engines"
