def __init__(self, parent):
wx.Panel.__init__(self, parent)
try:
default_colour = wx.SystemSettings.GetColour(wx.SYS_COLOUR_MENUBAR)
except AttributeError:
default_colour = wx.SystemSettings_GetColour(wx.SYS_COLOUR_MENUBAR)
self.SetBackgroundColour(default_colour)
# Fold panel and its style settings
# FIXME: If we dont insert a value in size or if we set wx.DefaultSize,
# the fold_panel doesnt show. This means that, for some reason, Sizer
# is not working properly in this panel. It might be on some child or
# parent panel. Perhaps we need to insert the item into the sizer also...
# Study this.
fold_panel = fpb.FoldPanelBar(self, -1, wx.DefaultPosition,
wx.DefaultSize, 0, fpb.FPB_SINGLE_FOLD)
# Fold panel style
style = fpb.CaptionBarStyle()
style.SetCaptionStyle(fpb.CAPTIONBAR_GRADIENT_V)
style.SetFirstColour(default_colour)
style.SetSecondColour(default_colour)
# Fold 1 - Surface properties
item = fold_panel.AddFoldPanel(_("Surface properties"), collapsed=True)
fold_panel.ApplyCaptionStyle(item, style)
fold_panel.AddFoldPanelWindow(item,
SurfaceProperties(item),
spacing=0,
leftSpacing=0,
rightSpacing=0)
# Fold 2 - Surface tools
item = fold_panel.AddFoldPanel(_("Advanced options"), collapsed=True)
fold_panel.ApplyCaptionStyle(item, style)
fold_panel.AddFoldPanelWindow(item,
SurfaceTools(item),
spacing=0,
leftSpacing=0,
rightSpacing=0)
#fold_panel.AddFoldPanelWindow(item, QualityAdjustment(item), Spacing= 0,
# leftSpacing=0, rightSpacing=0)
#fold_panel.Expand(fold_panel.GetFoldPanel(1))
self.fold_panel = fold_panel
self.__bind_evt()
# Panel sizer to expand fold panel
sizer = wx.BoxSizer(wx.VERTICAL)
sizer.Add(fold_panel, 1, wx.GROW | wx.EXPAND)
sizer.Fit(self)
self.SetSizer(sizer)
self.Update()
self.SetAutoLayout(1)
fold_panel.Expand(fold_panel.GetFoldPanel(1))
self.ResizeFPB()
fold_panel.Expand(fold_panel.GetFoldPanel(0))
def csStyleSetup(self):
# Style used for fold bar menu
csStyle = fpb.CaptionBarStyle()
csStyle.SetFirstColour(wx.Colour("#36393e"))
csStyle.SetSecondColour(wx.Colour("#36393e"))
csStyle.SetCaptionColour("WHITE")
csStyle.SetCaptionFont(wx.Font(9, wx.DEFAULT, wx.NORMAL, wx.BOLD))
return csStyle
def UpdatePanelContents(self, selected_node):
self.DestroyChildren()
if selected_node != None:
panel_bar = fpb.FoldPanelBar(self, -1, agwStyle=fpb.FPB_VERTICAL)
# fold_panel = panel_bar.AddFoldPanel(selected_node._label)
# #thing = wx.TextCtrl(fold_panel, -1, size=(400, -1), style=wx.TE_MULTILINE)
# selected_node
# Node Properties UI
selected_node.NodePanelUI(self, panel_bar)
#thing2 = wx.TextCtrl(fold_panel2, -1, size=(400, -1), style=wx.TE_MULTILINE)
#main_sizer.Add(st, flag=wx.EXPAND|wx.BOTH, border=20)
#main_sizer.Add(panel_bar, 1, wx.EXPAND)
self._mainSizer.Add(panel_bar, 1, wx.EXPAND | wx.ALL)
style = fpb.CaptionBarStyle()
style.SetCaptionFont(self.Parent.GetFont())
style.SetCaptionColour(wx.Colour("#fff"))
style.SetFirstColour(wx.Colour('#424242'))
style.SetSecondColour(wx.Colour('#424242'))
panel_bar.ApplyCaptionStyleAll(style)
else:
# Delete the window if the node is not selected
self._mainSizer.Clear(delete_windows=True)
self.AUIManager.Update()
self.Parent.Refresh()
self.Parent.Update()
def __init__(self, parent):
wx.Panel.__init__(self, parent)
try:
default_colour = wx.SystemSettings.GetColour(wx.SYS_COLOUR_MENUBAR)
except AttributeError:
default_colour = wx.SystemSettings_GetColour(wx.SYS_COLOUR_MENUBAR)
self.SetBackgroundColour(default_colour)
# Fold panel and its style settings
# FIXME: If we dont insert a value in size or if we set wx.DefaultSize,
# the fold_panel doesnt show. This means that, for some reason, Sizer
# is not working properly in this panel. It might be on some child or
# parent panel. Perhaps we need to insert the item into the sizer also...
# Study this.
#gbs = wx.GridBagSizer()
#gbs.AddGrowableRow(0, 1)
#gbs.AddGrowableCol(0, 1)
#self.gbs = gbs
self.last_size = None
# Panel sizer to expand fold panel
sizer = wx.BoxSizer(wx.VERTICAL)
#sizer.Add(gbs, 1, wx.GROW|wx.EXPAND)
self.SetSizer(sizer)
fold_panel = fpb.FoldPanelBar(self, -1, wx.DefaultPosition,
wx.DefaultSize, 0, fpb.FPB_SINGLE_FOLD)
self.fold_panel = fold_panel
# Fold panel style
style = fpb.CaptionBarStyle()
style.SetCaptionStyle(fpb.CAPTIONBAR_GRADIENT_V)
style.SetFirstColour(default_colour)
style.SetSecondColour(default_colour)
# Fold 1 - Mask properties
item = fold_panel.AddFoldPanel(_("Mask properties"), collapsed=True)
self.mask_prop_panel = MaskProperties(item)
fold_panel.ApplyCaptionStyle(item, style)
fold_panel.AddFoldPanelWindow(item,
self.mask_prop_panel,
spacing=0,
leftSpacing=0,
rightSpacing=0)
# Fold 2 - Advanced edition tools
item = fold_panel.AddFoldPanel(_("Manual edition"), collapsed=True)
etw = EditionTools(item)
fold_panel.ApplyCaptionStyle(item, style)
fold_panel.AddFoldPanelWindow(item,
etw,
spacing=0,
leftSpacing=0,
rightSpacing=0)
self.__id_editor = item.GetId()
self.last_panel_opened = None
# Fold 3 - Watershed
item = fold_panel.AddFoldPanel(_("Watershed"), collapsed=True)
wtw = WatershedTool(item)
fold_panel.ApplyCaptionStyle(item, style)
fold_panel.AddFoldPanelWindow(item,
wtw,
spacing=0,
leftSpacing=0,
rightSpacing=0)
self.__id_watershed = item.GetId()
sizer.Add(fold_panel, 1, wx.EXPAND)
fold_panel.Expand(fold_panel.GetFoldPanel(2))
self.ResizeFPB()
fold_panel.Expand(fold_panel.GetFoldPanel(0))
sizer.Layout()
self.Fit()
self.fold_panel = fold_panel
self.last_style = None
self.__bind_evt()
self.__bind_pubsub_evt()
class main_controls(wx.Panel):
def __init__(self, parent, config, pres, panel, iconfile):
super(wx.Panel, self).__init__(panel)
self.parent = parent
self.config = config
self.pres = pres
self.backgroundchoices = self.config.backgroundchoices
# Get a few tool bar icons
tsize = (16, 16)
try:
self.open_bmp = wx.ArtProvider.GetBitmap(wx.ART_FILE_OPEN,
wx.ART_TOOLBAR, tsize)
self.next_bmp = wx.ArtProvider.GetBitmap(wx.ART_GO_FORWARD,
wx.ART_TOOLBAR, tsize)
self.report_bmp = wx.ArtProvider.GetBitmap(wx.ART_LIST_VIEW,
wx.ART_TOOLBAR, tsize)
self.A_bmp = wx.ArtProvider.GetBitmap(wx.ART_HELP_SETTINGS,
wx.ART_TOOLBAR, tsize)
try:
self.ud_bmp = wx.Bitmap(
wx.Image(iconfile).Rescale(tsize[0], tsize[1]))
except Exception, ex:
self.ud_bmp = wx.ArtProvider.GetBitmap(wx.ART_HELP_SETTINGS,
wx.ART_TOOLBAR, tsize)
print ex
except Exception, ex:
self.open_bmp = None
self.next_bmp = None
self.report_bmp = None
self.A_bmp = None
self.ud_bmp = None
print ex
# ..........................
#
# Sizers for Controls
#
# .............................
sizercontrol = wx.BoxSizer(wx.VERTICAL)
# Small Toolbar
buttonsizer = wx.BoxSizer(wx.HORIZONTAL)
bsize = (50, 25)
self.openbutton = wx.BitmapButton(self, -1, self.open_bmp, size=bsize)
self.procbutton = wx.BitmapButton(self, -1, self.next_bmp, size=bsize)
self.procbutton.SetBackgroundColour(wx.Colour(150, 150, 255))
self.udbutton = wx.BitmapButton(self, -1, self.ud_bmp, size=bsize)
self.udbutton.SetBackgroundColour(wx.Colour(255, 255, 150))
self.ppbutton = wx.BitmapButton(self, -1, self.report_bmp, size=bsize)
self.ppbutton.SetBackgroundColour(wx.Colour(255, 150, 150))
self.autobutton = wx.Button(self, -1, "All", size=bsize) # self.A_bmp
self.parent.Bind(wx.EVT_BUTTON, self.pres.on_open, self.openbutton)
self.parent.Bind(wx.EVT_BUTTON, self.pres.on_dataprep_button,
self.procbutton)
self.parent.Bind(wx.EVT_BUTTON, self.pres.on_unidec_button,
self.udbutton)
self.parent.Bind(wx.EVT_BUTTON, self.pres.on_pick_peaks, self.ppbutton)
self.parent.Bind(wx.EVT_BUTTON, self.pres.on_auto, self.autobutton)
buttons = [
self.openbutton, self.procbutton, self.udbutton, self.ppbutton,
self.autobutton
]
for button in buttons:
buttonsizer.Add(button, 0, wx.EXPAND)
sizercontrol.Add(buttonsizer, 0, wx.EXPAND)
# Setting up main fold controls
size1 = (75, -1)
self.foldpanels = fpb.FoldPanelBar(self, -1, agwStyle=fpb.FPB_VERTICAL)
style1 = fpb.CaptionBarStyle()
style1b = fpb.CaptionBarStyle()
style1c = fpb.CaptionBarStyle()
style2 = fpb.CaptionBarStyle()
style2b = fpb.CaptionBarStyle()
style3 = fpb.CaptionBarStyle()
style3b = fpb.CaptionBarStyle()
bright = 150
bright2 = 200
style1.SetFirstColour(wx.Colour(bright, bright, 255))
style1b.SetFirstColour(wx.Colour(bright2, bright2, 255))
style1c.SetFirstColour(wx.Colour(bright2, 255, bright2))
style2.SetFirstColour(wx.Colour(255, 255, bright))
style2b.SetFirstColour(wx.Colour(255, 255, bright2))
style3.SetFirstColour(wx.Colour(255, bright, bright))
style3b.SetFirstColour(wx.Colour(255, bright2, bright2))
bright3 = 255
bright4 = 255
style1.SetSecondColour(wx.Colour(bright3, bright3, 255))
style1b.SetSecondColour(wx.Colour(bright4, bright4, 255))
style1c.SetSecondColour(wx.Colour(bright4, 255, bright4))
style2.SetSecondColour(wx.Colour(255, 255, bright3))
style2b.SetSecondColour(wx.Colour(255, 255, bright4))
style3.SetSecondColour(wx.Colour(255, bright3, bright3))
style3b.SetSecondColour(wx.Colour(255, bright4, bright4))
# Panel to set the data prep controls
foldpanel1 = self.foldpanels.AddFoldPanel(caption="Data Processing",
collapsed=False,
cbstyle=style1)
panel1 = wx.Panel(foldpanel1, -1)
sizercontrol1 = wx.GridBagSizer(wx.VERTICAL)
self.ctlminmz = wx.TextCtrl(panel1, value="", size=(50, -1))
self.ctlmaxmz = wx.TextCtrl(panel1, value="", size=(60, -1))
mzrange = wx.BoxSizer(wx.HORIZONTAL)
mzrange.Add(wx.StaticText(panel1, label="m/z Range: "), 0,
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT)
mzrange.Add(self.ctlminmz)
mzrange.Add(wx.StaticText(panel1, label=" to "), 0,
wx.ALIGN_CENTER_VERTICAL)
mzrange.Add(self.ctlmaxmz)
mzrange.Add(wx.StaticText(panel1, label=" Th "), 0,
wx.ALIGN_CENTER_VERTICAL)
sizercontrol1.Add(mzrange, (0, 0), span=(1, 5))
# self.subtypectl = wx.Choice(panel1, -1, choices=self.backgroundchoices)
self.ctlbuff = wx.TextCtrl(panel1, value="", size=size1)
# self.ctlsmooth = wx.TextCtrl(panel1, value="", size=size1)
self.ctlbinsize = wx.TextCtrl(panel1, value="", size=size1)
# sizercontrol1.Add(self.subtypectl, (1 + self.config.imflag, 0))
sizercontrol1.Add(wx.StaticText(panel1,
label="Background Subtraction: "),
(1, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
sizercontrol1.Add(self.ctlbuff, (1, 1))
# sizercontrol1.Add(self.ctlsmooth, (2 + self.config.imflag * 2, 1))
# sizercontrol1.Add(wx.StaticText(panel1, label="Gaussian Smoothing: "), (2 + self.config.imflag * 2, 0),
# flag=wx.ALIGN_CENTER_VERTICAL)
sizercontrol1.Add(self.ctlbinsize, (2, 1))
sizercontrol1.Add(wx.StaticText(panel1, label="Bin Every: "), (2, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
self.ctldatanorm = wx.CheckBox(panel1, label="Normalize Data")
sizercontrol1.Add(self.ctldatanorm, (3, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
self.dataprepbutton = wx.Button(panel1, -1, "Process Data")
self.parent.Bind(wx.EVT_BUTTON, self.pres.on_dataprep_button,
self.dataprepbutton)
sizercontrol1.Add(self.dataprepbutton, (4, 0),
span=(1, 2),
flag=wx.EXPAND)
panel1.SetSizer(sizercontrol1)
sizercontrol1.Fit(panel1)
self.foldpanels.AddFoldPanelWindow(foldpanel1, panel1,
fpb.FPB_ALIGN_WIDTH)
self.foldpanels.AddFoldPanelWindow(foldpanel1,
wx.StaticText(foldpanel1, -1, " "),
fpb.FPB_ALIGN_WIDTH)
# Panel for UniDec Parameters
foldpanel2 = self.foldpanels.AddFoldPanel(caption="UniDec Parameters",
collapsed=False,
cbstyle=style2)
panel2 = wx.Panel(foldpanel2, -1)
sizercontrol2 = wx.GridBagSizer(wx.VERTICAL)
self.ctlstartz = wx.TextCtrl(panel2, value="", size=(60, -1))
self.ctlendz = wx.TextCtrl(panel2, value="", size=(60, -1))
zrange = wx.BoxSizer(wx.HORIZONTAL)
zrange.Add(wx.StaticText(panel2, label="Charge Range: "), 0,
wx.ALIGN_CENTER_VERTICAL)
zrange.Add(self.ctlstartz)
zrange.Add(wx.StaticText(panel2, label=" to "), 0,
wx.ALIGN_CENTER_VERTICAL)
zrange.Add(self.ctlendz)
self.ctlmasslb = wx.TextCtrl(panel2, value="", size=(60, -1))
self.ctlmassub = wx.TextCtrl(panel2, value="", size=(70, -1))
massrange = wx.BoxSizer(wx.HORIZONTAL)
massrange.Add(wx.StaticText(panel2, label="Mass Range: "), 0,
wx.ALIGN_CENTER_VERTICAL)
massrange.Add(self.ctlmasslb)
massrange.Add(wx.StaticText(panel2, label=" to "), 0,
wx.ALIGN_CENTER_VERTICAL)
massrange.Add(self.ctlmassub)
massrange.Add(wx.StaticText(panel2, label=" Da "), 0,
wx.ALIGN_CENTER_VERTICAL)
self.ctlmassbins = wx.TextCtrl(panel2, value="", size=size1)
self.ctlmzsig = wx.TextCtrl(panel2, value="", size=size1)
self.ctlpsfun = wx.RadioBox(
panel2,
label="Peak Shape Function",
choices=["Gaussian", "Lorentzian", "Split G/L"])
self.rununidec = wx.Button(panel2, -1, "Run UniDec")
self.parent.Bind(wx.EVT_BUTTON, self.pres.on_unidec_button,
self.rununidec)
sizercontrol2.Add(zrange, (0, 0), span=(1, 2))
sizercontrol2.Add(massrange, (1, 0), span=(1, 2))
sizercontrol2.Add(self.ctlmassbins, (2 + self.config.imflag, 1),
span=(1, 2))
sizercontrol2.Add(self.ctlmzsig, (3 + self.config.imflag * 2, 1),
span=(1, 2))
sizercontrol2.Add(wx.StaticText(panel2,
label="Sample Mass Every (Da): "),
(2 + self.config.imflag, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
sizercontrol2.Add(wx.StaticText(panel2, label="Peak FWHM (Th): "),
(3 + self.config.imflag * 2, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
sizercontrol2.Add(self.ctlpsfun, (4 + self.config.imflag * 3, 0),
span=(1, 2))
sizercontrol2.Add(self.rununidec, (5 + self.config.imflag * 3, 0),
span=(1, 2),
flag=wx.EXPAND)
panel2.SetSizer(sizercontrol2)
sizercontrol2.Fit(panel2)
self.foldpanels.AddFoldPanelWindow(foldpanel2, panel2,
fpb.FPB_ALIGN_WIDTH)
self.foldpanels.AddFoldPanelWindow(foldpanel2,
wx.StaticText(foldpanel2, -1, " "),
fpb.FPB_ALIGN_WIDTH)
# Panel for Additional Restraints
foldpanel2b = self.foldpanels.AddFoldPanel(
caption="Additional Filters/Restraints",
collapsed=True,
cbstyle=style2b)
panel2b = wx.Panel(foldpanel2b, -1)
gbox2b = wx.GridBagSizer(wx.VERTICAL)
self.ctlzzsig = wx.TextCtrl(panel2b, value="", size=size1)
gbox2b.Add(wx.StaticText(panel2b, label="Charge Smooth Width: "),
(0, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
gbox2b.Add(self.ctlzzsig, (0, 1), flag=wx.ALIGN_CENTER_VERTICAL)
self.ctlmolig = wx.TextCtrl(panel2b, value="", size=size1)
gbox2b.Add(wx.StaticText(panel2b, label="Mass Difference (Da): "),
(1, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
gbox2b.Add(self.ctlmolig, (1, 1), flag=wx.ALIGN_CENTER_VERTICAL)
self.ctlmsig = wx.TextCtrl(panel2b, value="", size=size1)
gbox2b.Add(wx.StaticText(panel2b, label="Mass Smooth Width: "), (2, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
gbox2b.Add(self.ctlmsig, (2, 1), flag=wx.ALIGN_CENTER_VERTICAL)
self.ctlnumit = wx.TextCtrl(panel2b, value='', size=size1)
gbox2b.Add(wx.StaticText(panel2b, label='Maximum # of Iterations: '),
(8, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
gbox2b.Add(self.ctlnumit, (8, 1), flag=wx.ALIGN_CENTER_VERTICAL)
self.ctlpoolflag = wx.RadioBox(
panel2b,
label="m/z to Mass Transformation",
choices=["Integration", "Interpolation"])
gbox2b.Add(self.ctlpoolflag, (7, 0),
span=(1, 2),
flag=wx.ALIGN_CENTER_VERTICAL)
self.ctlorbimode = wx.CheckBox(panel2b, label="Charge Scaling Mode")
gbox2b.Add(self.ctlorbimode, (5, 0), flag=wx.ALIGN_CENTER_VERTICAL)
self.ctlisotopemode = wx.CheckBox(panel2b, label="Isotope Mode")
gbox2b.Add(self.ctlisotopemode, (4, 0), flag=wx.ALIGN_CENTER_VERTICAL)
self.ctlmanualassign = wx.CheckBox(panel2b, label="Manual Mode")
self.parent.Bind(wx.EVT_CHECKBOX, self.on_check_manual,
self.ctlmanualassign)
gbox2b.Add(self.ctlmanualassign, (4, 1), flag=wx.ALIGN_CENTER_VERTICAL)
self.ctladductmass = wx.TextCtrl(panel2b, value='', size=size1)
gbox2b.Add(self.ctladductmass, (9, 1), span=(1, 1))
gbox2b.Add(wx.StaticText(panel2b, label="Adduct Mass (Da): "), (9, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
mlsizer = wx.BoxSizer(wx.HORIZONTAL)
self.ctlmasslistflag = wx.CheckBox(panel2b, label="Mass List Window:")
self.parent.Bind(wx.EVT_CHECKBOX, self.on_mass_list,
self.ctlmasslistflag)
self.ctlmtabsig = wx.TextCtrl(panel2b, value="", size=(60, -1))
mlsizer.Add(self.ctlmasslistflag, 0, wx.ALIGN_CENTER_VERTICAL)
mlsizer.Add(self.ctlmtabsig, 0, wx.ALIGN_CENTER_VERTICAL)
mlsizer.Add(wx.StaticText(panel2b, label=" Da "), 0,
wx.ALIGN_CENTER_VERTICAL)
gbox2b.Add(mlsizer, (6, 0), span=(1, 2))
sb = wx.StaticBox(panel2b, label='Native Charge Offset Range')
sbs = wx.StaticBoxSizer(sb, orient=wx.HORIZONTAL)
self.ctlminnativez = wx.TextCtrl(panel2b, value='', size=(75, -1))
self.ctlmaxnativez = wx.TextCtrl(panel2b, value='', size=(75, -1))
sbs.Add(self.ctlminnativez,
flag=wx.LEFT | wx.ALIGN_CENTER_VERTICAL | wx.EXPAND,
border=5)
sbs.Add(wx.StaticText(panel2b, label=' to '), 0,
wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
sbs.Add(self.ctlmaxnativez,
flag=wx.LEFT | wx.ALIGN_CENTER_VERTICAL | wx.EXPAND,
border=5)
gbox2b.Add(sbs, (3, 0), span=(1, 2), flag=wx.EXPAND)
panel2b.SetSizer(gbox2b)
gbox2b.Fit(panel2b)
self.foldpanels.AddFoldPanelWindow(foldpanel2b, panel2b,
fpb.FPB_ALIGN_WIDTH)
self.foldpanels.AddFoldPanelWindow(foldpanel2b,
wx.StaticText(foldpanel2b, -1, " "),
fpb.FPB_ALIGN_WIDTH)
# Panel for Peak Selection and Plotting
foldpanel3 = self.foldpanels.AddFoldPanel(
caption="Peak Selection, Extraction, and Plotting",
collapsed=False,
cbstyle=style3)
panel3 = wx.Panel(foldpanel3, -1)
sizercontrol3 = wx.GridBagSizer(wx.VERTICAL)
self.ctlwindow = wx.TextCtrl(panel3, value="", size=size1)
self.ctlthresh = wx.TextCtrl(panel3, value="", size=size1)
self.ctlnorm = wx.RadioBox(panel3,
label="Peak Normalization",
choices=["None", "Max", "Total"])
self.ctlnorm2 = wx.RadioBox(
panel3,
label="Extract Normalization",
choices=["None", "Max", "Sum", "Peak Max", "Peak Sum"],
majorDimension=3,
style=wx.RA_SPECIFY_COLS)
self.ctlextractwindow = wx.TextCtrl(panel3, value="", size=size1)
self.ctlextract = wx.ComboBox(
panel3,
value="Height",
choices=self.parent.extractchoices.values(),
style=wx.CB_READONLY)
self.plotbutton = wx.Button(panel3, -1, "Peak Detection/Extraction")
self.plotbutton2 = wx.Button(panel3, -1, "Plot 2D Grids")
self.parent.Bind(wx.EVT_BUTTON, self.pres.make2dplots,
self.plotbutton2)
self.parent.Bind(wx.EVT_BUTTON, self.pres.on_pick_peaks,
self.plotbutton)
sizercontrol3.Add(self.ctlwindow, (0, 1))
sizercontrol3.Add(wx.StaticText(panel3, label="Picking Range (Da): "),
(0, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
sizercontrol3.Add(self.ctlthresh, (1, 1))
sizercontrol3.Add(wx.StaticText(panel3, label="Picking Threshold: "),
(1, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
sizercontrol3.Add(self.ctlnorm, (2, 0), span=(1, 2), flag=wx.EXPAND)
sizercontrol3.Add(wx.StaticText(panel3,
label="How to Extract Peaks: "),
(3, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
sizercontrol3.Add(self.ctlextract, (3, 1), span=(1, 1), flag=wx.EXPAND)
sizercontrol3.Add(self.ctlnorm2, (5, 0), span=(1, 2), flag=wx.EXPAND)
sizercontrol3.Add(wx.StaticText(panel3, label="Extraction Window: "),
(4, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
sizercontrol3.Add(self.ctlextractwindow, (4, 1), span=(1, 1))
sizercontrol3.Add(self.plotbutton, (6, 0), span=(1, 2), flag=wx.EXPAND)
sizercontrol3.Add(self.plotbutton2, (7, 0),
span=(1, 2),
flag=wx.EXPAND)
panel3.SetSizer(sizercontrol3)
sizercontrol3.Fit(panel3)
self.foldpanels.AddFoldPanelWindow(foldpanel3, panel3,
fpb.FPB_ALIGN_WIDTH)
self.foldpanels.AddFoldPanelWindow(foldpanel3,
wx.StaticText(foldpanel3, -1, " "),
fpb.FPB_ALIGN_WIDTH)
# Plotting Parameters
foldpanel3b = self.foldpanels.AddFoldPanel(
caption="Additional Plotting Parameters",
collapsed=True,
cbstyle=style3b)
panel3b = wx.Panel(foldpanel3b, -1)
gbox3b = wx.GridBagSizer(wx.VERTICAL)
gbox3b.Add(wx.StaticText(panel3b, label='2D Color Map: '), (0, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
self.ctl2dcm = wx.ComboBox(panel3b, wx.ID_ANY, style=wx.CB_READONLY)
gbox3b.Add(wx.StaticText(panel3b, label='Peaks Color Map: '), (1, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
self.ctlpeakcm = wx.ComboBox(panel3b, wx.ID_ANY, style=wx.CB_READONLY)
for mp in self.config.cmaps2:
self.ctl2dcm.Append(mp)
for mp in self.config.cmaps:
self.ctlpeakcm.Append(mp)
gbox3b.Add(self.ctl2dcm, (0, 1), flag=wx.ALIGN_CENTER_VERTICAL)
gbox3b.Add(self.ctlpeakcm, (1, 1), flag=wx.ALIGN_CENTER_VERTICAL)
self.ctldiscrete = wx.CheckBox(panel3b, label="Discrete Plot")
gbox3b.Add(self.ctldiscrete, (2, 0), flag=wx.ALIGN_CENTER_VERTICAL)
self.ctlpublicationmode = wx.CheckBox(panel3b,
label="Publication Mode")
gbox3b.Add(self.ctlpublicationmode, (2, 1),
flag=wx.ALIGN_CENTER_VERTICAL)
self.ctlrawflag = wx.RadioBox(panel3b,
label="",
choices=["Reconvolved", "Raw Results"])
gbox3b.Add(self.ctlrawflag, (3, 0), span=(1, 2), flag=wx.EXPAND)
gbox3b.Add(wx.StaticText(panel3b, label="Marker Threshold: "), (4, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
gbox3b.Add(wx.StaticText(panel3b, label="Species Separation: "),
(5, 0),
flag=wx.ALIGN_CENTER_VERTICAL)
self.ctlthresh2 = wx.TextCtrl(panel3b, value="", size=size1)
self.ctlsep = wx.TextCtrl(panel3b, value="", size=size1)
gbox3b.Add(self.ctlthresh2, (4, 1), flag=wx.ALIGN_CENTER_VERTICAL)
gbox3b.Add(self.ctlsep, (5, 1), flag=wx.ALIGN_CENTER_VERTICAL)
sb2 = wx.StaticBox(panel3b, label='Integration Range')
sbs2 = wx.StaticBoxSizer(sb2, orient=wx.HORIZONTAL)
self.ctlintlb = wx.TextCtrl(panel3b, value='', size=(75, -1))
self.ctlintub = wx.TextCtrl(panel3b, value='', size=(75, -1))
sbs2.Add(self.ctlintlb,
flag=wx.LEFT | wx.ALIGN_CENTER_VERTICAL | wx.EXPAND,
border=5)
sbs2.Add(wx.StaticText(panel3b, label=' to '),
0,
flag=wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
sbs2.Add(self.ctlintub,
flag=wx.LEFT | wx.ALIGN_CENTER_VERTICAL | wx.EXPAND,
border=5)
sbs2.Add(wx.StaticText(panel3b, label=' Da '),
0,
flag=wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
gbox3b.Add(sbs2, (6, 0), span=(1, 2), flag=wx.EXPAND)
sb3 = wx.StaticBox(panel3b, label='Limits on # of Spectra')
sbs3 = wx.StaticBoxSizer(sb3, orient=wx.HORIZONTAL)
self.ctlcrossover = wx.TextCtrl(panel3b, value='', size=(75, -1))
self.ctlnumtot = wx.TextCtrl(panel3b, value='', size=(75, -1))
sbs3.Add(wx.StaticText(panel3b, label='If over'),
0,
flag=wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
sbs3.Add(self.ctlcrossover,
flag=wx.LEFT | wx.ALIGN_CENTER_VERTICAL | wx.EXPAND,
border=5)
sbs3.Add(wx.StaticText(panel3b, label=' plot only'),
0,
flag=wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
sbs3.Add(self.ctlnumtot,
flag=wx.LEFT | wx.ALIGN_CENTER_VERTICAL | wx.EXPAND,
border=5)
gbox3b.Add(sbs3, (7, 0), span=(1, 2), flag=wx.EXPAND)
self.replotbutton = wx.Button(panel3b, -1, "Replot")
self.parent.Bind(wx.EVT_BUTTON, self.pres.on_replot, self.replotbutton)
gbox3b.Add(self.replotbutton, (8, 0), span=(1, 1), flag=wx.EXPAND)
self.compositebutton = wx.Button(panel3b, -1, "Plot Composite")
self.parent.Bind(wx.EVT_BUTTON, self.pres.on_plot_composite,
self.compositebutton)
gbox3b.Add(self.compositebutton, (8, 1), span=(1, 1), flag=wx.EXPAND)
panel3b.SetSizer(gbox3b)
gbox3b.Fit(panel3b)
self.foldpanels.AddFoldPanelWindow(foldpanel3b, panel3b,
fpb.FPB_ALIGN_WIDTH)
self.foldpanels.AddFoldPanelWindow(foldpanel3b,
wx.StaticText(foldpanel3b, -1, " "),
fpb.FPB_ALIGN_WIDTH)
bright = 250
foldpanel1.SetBackgroundColour(wx.Colour(bright, bright, 255))
foldpanel2.SetBackgroundColour(wx.Colour(255, 255, bright))
foldpanel2b.SetBackgroundColour(wx.Colour(255, 255, bright))
foldpanel3.SetBackgroundColour(wx.Colour(255, bright, bright))
foldpanel3b.SetBackgroundColour(wx.Colour(255, bright, bright))
sizercontrol.SetMinSize((250 + self.config.imflag * 10, 0))
# Add to top control sizer
sizercontrol.Add(self.foldpanels, 1, wx.EXPAND)
self.SetSizer(sizercontrol)
sizercontrol.Fit(self)
self.setup_tool_tips()
