def test_add_with_main(self):
with TemporaryDirectory() as tmp_dir:
tool_name = 'test___2'
tool_version = '123'
add_tool(tool_name,
tool_version,
has_primary=True,
root_repo_path=tmp_dir)
return
def test_add_with_subtools(self):
with TemporaryDirectory() as tmp_dir:
tool_name = 'test___3'
tool_version = '123'
add_tool(tool_name,
tool_version,
subtool_names=['first', 'second'],
has_primary=True,
root_repo_path=tmp_dir)
return
def test_add_parent_then_subtool(self):
with TemporaryDirectory() as tmp_dir:
tool_name = 'test_tool'
tool_version = '0.1'
add_tool(tool_name, tool_version, root_repo_path=tmp_dir)
add_subtool(tool_name,
tool_version,
'subtool1',
root_repo_path=tmp_dir,
update_featureList=True)
assert True
return
def main(argsl=None):
if not argsl:
argsl = sys.argv[1:]
parser = get_parser()
args = parser.parse_args(argsl)
if args.command == 'tool':
add_tool(args.tool_name,
args.version_name,
subtool_names=args.subtool_names,
biotools_id=args.biotoolsID,
has_primary=args.has_primary,
init_cwl=args.init_cwl,
root_repo_path=args.root_path)
elif args.command == 'subtool':
add_subtool(args.tool_name,
args.version_name,
args.subtool_name,
update_featureList=args.update_featureList,
init_cwl=args.init_cwl,
root_repo_path=args.root_path)
elif args.command == 'common_script':
add_common_script_metadata(args.group_name,
args.project_name,
args.script_version,
args.filename,
root_repo_path=args.root_path)
elif args.command == 'script':
add_script(args.group_name,
args.project_name,
args.script_version,
args.script_name,
parentMetadata=args.parent_metadata,
init_cwl=args.init_cwl,
root_repo_path=args.root_path)
elif args.command == 'workflow':
add_workflow(args.group_name, args.workflow_name,
args.workflow_version)
else:
parser.print_help()
return
def test_add_multiple(self):
with TemporaryDirectory() as tmp_dir:
add_tool('fake_1', '123', root_repo_path=tmp_dir) # parent only.
add_tool('fake_2', '123', has_primary=True,
root_repo_path=tmp_dir) # # parent with main tool
add_tool('fake_3',
'123',
subtool_names=['first', 'second'],
has_primary=True,
root_repo_path=tmp_dir)
assert True
return
def test_make_file(self):
with TemporaryDirectory(prefix="xD_test") as tmpdir:
add_tool('test1', '1.0', 'subtool1', root_repo_path=tmpdir)
assert True
return
def test_add_parent_only(self):
with TemporaryDirectory(prefix='dont_see me_') as tmp_dir:
tool_name = 'test__1'
tool_version = '123'
add_tool(tool_name, tool_version, root_repo_path=tmp_dir)
return