def read_input(args):
file_name_input = ''
frame_files = []
for i in range(len(args)):
pair=args[i].split('=')
if pair[0]=='input':
file_name_input = pair[1]
#other args are considered as the pickle directory
if len(pair) == 1:
if pair[0].endswith('.pickle'):
frame_files.append(pair[0])
if file_name_input == '':
print("Please provide input-parameters file (usage: input=yourinput.inp)")
exit()
from xfel.cxi.postrefine import postref_handler
prh = postref_handler()
iph = prh.read_input_parameters(file_name_input)
#make run_no folder
if not os.path.exists(iph.run_no):
os.makedirs(iph.run_no)
#check if pickle_dir is given in input file instead of from cmd arguments.
if len(frame_files)==0:
print('Path to pickle files is missing, please specify it at command line.')
print('Usage: cxi.postrefine input=myinp.inp /path/to/pickles/*')
exit()
return iph, frame_files
def read_input(args):
file_name_input = ''
frame_files = []
for i in range(len(args)):
pair=args[i].split('=')
if pair[0]=='input':
file_name_input = pair[1]
#other args are considered as the pickle directory
if len(pair) == 1:
if pair[0].endswith('.pickle'):
frame_files.append(pair[0])
if file_name_input == '':
print "Please provide input-parameters file (usage: input=yourinput.inp)"
exit()
from xfel.cxi.postrefine import postref_handler
prh = postref_handler()
iph = prh.read_input_parameters(file_name_input)
#make run_no folder
if not os.path.exists(iph.run_no):
os.makedirs(iph.run_no)
#check if pickle_dir is given in input file instead of from cmd arguments.
if len(frame_files)==0:
print 'Path to pickle files is missing, please specify it at command line.'
print 'Usage: cxi.postrefine input=myinp.inp /path/to/pickles/*'
exit()
return iph, frame_files
def postrefine_by_frame_mproc(frame_no, frame_files, iph, miller_array_ref): from xfel.cxi.postrefine import postref_handler prh = postref_handler() pres = prh.postrefine_by_frame(frame_no, frame_files[frame_no], iph, miller_array_ref) return pres
def scale_frame_by_mean_I_mproc(frame_no, frame_files, iph, mean_of_mean_I): from xfel.cxi.postrefine import postref_handler prh = postref_handler() pres = prh.scale_frame_by_mean_I(frame_no,frame_files[frame_no], iph, mean_of_mean_I) return pres
def determine_mean_I_mproc(frame_no, frame_files, iph): from xfel.cxi.postrefine import postref_handler prh = postref_handler() mean_I = prh.calc_mean_intensity(frame_files[frame_no], iph) return mean_I
def postrefine_by_frame_mproc(frame_no, frame_files, iph, miller_array_ref): from xfel.cxi.postrefine import postref_handler prh = postref_handler() pres = prh.postrefine_by_frame(frame_no, frame_files[frame_no], iph, miller_array_ref) return pres
def scale_frame_by_mean_I_mproc(frame_no, frame_files, iph, mean_of_mean_I): from xfel.cxi.postrefine import postref_handler prh = postref_handler() pres = prh.scale_frame_by_mean_I(frame_no,frame_files[frame_no], iph, mean_of_mean_I) return pres
def determine_mean_I_mproc(frame_no, frame_files, iph): from xfel.cxi.postrefine import postref_handler prh = postref_handler() mean_I = prh.calc_mean_intensity(frame_files[frame_no], iph) return mean_I
