def validate(self):
"""TODO: Validation should be peformed by underlying data objects"""
if self.fields.get("type"):
if not self.fields["type"][3].get() or \
not self.fields["name"][3].get():
title = "Empty Fields"
message = "Please fill in all fields."
tkMessageBox.showerror(title,message,parent=self)
return False
if self.fields["type"][3].get() == 'sequences':
if getConfig().getDataItems(xlinkanalyzer.SEQUENCES_DATA_TYPE):
title = "Error"
message = "You cannot add more than one Sequence file."
tkMessageBox.showerror(title,message,parent=self)
return False
if hasattr(self.data, 'ranges') and hasattr(self.data, 'subunit'): #i.e. is is a domain
wrong = False
missingFields = []
message = ''
if not self.fields["name"][3].get():
missingFields.append('name')
wrong = True
if not self.fields["subunit"][3].get():
missingFields.append('subunit')
wrong = True
if not self.fields["ranges"][3].get():
missingFields.append('ranges')
wrong = True
if not wrong:
try:
self.data.parseRanges(self.fields["ranges"][3].get())
except DomainRangesException, e:
message = str(e)
wrong = True
if wrong:
title = "Error"
if not message:
message = "Missing {0} for the domain.".format(', '.join(missingFields))
out = tkMessageBox.showerror(title,message,parent=self)
return False
def testThis(self):
from xlinkanalyzer.data import SubunitMatcher
s = SubunitMatcher(xla.getConfig())
self.assertEqual('dna-directed rna polymerase I subunit RPA34',
s.getSubunit('sp|P47006|RPA34_YEAST').name)
self.assertEqual('dna-directed rna polymerase I subunit RPA34',
s.getSubunit('sp|P47006|RPA34_YEAST blashsdf').name)
self.assertEqual('dna-directed rna polymerase I subunit RPA34',
s.getSubunit('P47006').name)
self.assertEqual('dna-directed rna polymerase I subunit RPA34',
'dna-directed rna polymerase I subunit RPA34')
self.assertIsNone(s.getSubunit('47006'))
