def to_yaml(r):
'''serialize defaultdict, dict or pyfhir object to yaml'''
try:
r_dict = dict(r.as_json())
except AttributeError:
try:
r_dict = dict(r)
except TypeError:
r_dict = r
return(y_dump(r_dict, sort_keys=False))
def dump_struct(content, as_yaml=False):
'''
Contextmanager to pickle either *json* or *yaml* into a string
:param content: data to pickle
:param as_yaml: output as *yaml* instead of *json*
:yield str: pickled ``content``
'''
try:
yield y_dump(content, indent=4,
default_flow_style=False) if as_yaml else j_dump(
content, indent=2, sort_keys=True)
except TypeError:
yield None
def dump_struct(content, as_yaml=False):
'''
Contextmanager to pickle either *json* or *yaml* into a string
:param content: data to pickle
:param as_yaml: output as *yaml* instead of *json*
:yield str: pickled ``content``
'''
try:
yield y_dump(
content, indent=4, default_flow_style=False
) if as_yaml else j_dump(
content, indent=2, sort_keys=True
)
except TypeError:
yield None
def test_dump_struct_yaml():
for ty in [None, 'a', {'a': None}, {'a': 'b'}, {'a': ['b', 'c']}, range]:
with dump_struct(ty, as_yaml=True) as t:
assert t == y_dump(ty, indent=4, default_flow_style=False)
def test_dump_struct_yaml():
for ty in [None, 'a', {'a': None}, {'a': 'b'}, {'a': ['b', 'c']}, range]:
with dump_struct(ty, as_yaml=True) as t:
assert t == y_dump(
ty, indent=4, default_flow_style=False
)
def yaml(r_dict):
return y_dump(r_dict, allow_unicode=True, sort_keys=False)
def bundle_to_file(dict_bundle, type='bundle'):
write_out(app.root_path, f"test-argo-pl-{type}.json",
dumps(dict_bundle, indent=4))
write_out(app.root_path, f"test-argo-pl-{type}.yml",
y_dump(dict_bundle, sort_keys=False))
'validation': ['check-must-support',
'allow-any-extensions',
'check-aggregation',
'no-broken-links',
'show-reference-messages']}
'''
# convert to yaml
from yaml import load as y_load, dump as y_dump
try:
from yaml import CLoader as Loader, CDumper as Dumper
except ImportError:
from yaml import Loader, Dumper
yig_params = y_dump(ig_params, Dumper=Dumper, sort_keys=False)
print(yig_params)
ig_json = {
"resourceType": "ImplementationGuide",
"id": "healthedatainc.ig-template4",
"text": {
"status": "generated",
"div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>IGTest4</h2><p>The official URL for this implementation guide is: </p><pre>http://www.fhir.org/guides/test4/ImplementationGuide/healthedatainc.ig-template4</pre></div>"
},
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/igpublisher-spreadsheet",
"valueUri": "patient-on-usprofile-spreadsheet.xml"
},
{
