""" Algorithm thinking application 4-1 data: 2015/07/30 Author: You-Hao """ import alg_application4_provided as app4 import AT_project_4 as pj4 protein_human = app4.read_protein(app4.HUMAN_EYELESS_URL) protein_fruitfly = app4.read_protein(app4.FRUITFLY_EYELESS_URL) scoring_matrix = app4.read_scoring_matrix(app4.PAM50_URL) alignment_matrix_4_1 = pj4.compute_alignment_matrix(protein_human, protein_fruitfly, scoring_matrix, False) score_4_1, align_human_4_1, align_fruitfly_4_1 = pj4.compute_local_alignment(protein_human, protein_fruitfly, scoring_matrix, alignment_matrix_4_1) print score_4_1 print align_human_4_1 print align_fruitfly_4_1
