# -*- coding: utf-8 -*-
"""
Created on Wed Jun 8 10:17:43 2016
@author: dahoiv
"""
import os
import ConvertDataToDB
import image_registration
import do_img_registration_HGG as do_img_registration
if __name__ == "__main__":
os.nice(19)
image_registration.setup("HGG/")
image_registration.DATA_FOLDER = "/home/dahoiv/database_hgg/"
image_registration.DB_PATH = image_registration.DATA_FOLDER + "brainSegmentation.db"
ConvertDataToDB.copy_transforms(do_img_registration.find_images(), "/mnt/dokumenter/daniel/database/")
if __name__ == "__main__":
os.nice(19)
util.setup("temp_convert/", "LGG")
util.mkdir_p(util.TEMP_FOLDER_PATH)
util.DATA_FOLDER = "/mnt/dokumneter/data/database/"
if True:
db_path = "/home/dahoiv/disk/data/database3/LGG/"
util.DATA_FOLDER = util.DATA_FOLDER + "LGG" + "/"
util.DB_PATH = util.DATA_FOLDER + "brainSegmentation.db"
convert_table_inv = ConvertDataToDB.get_convert_table('/home/dahoiv/disk/data/Segmentations/NY_PID_LGG segmentert.xlsx')
convert_table = {v: k for k, v in convert_table_inv.items()}
print(convert_table)
print(util.DB_PATH)
conn = sqlite3.connect(util.DB_PATH)
conn.text_factory = str
cursor = conn.execute('''SELECT pid from Patient''')
conn2 = sqlite3.connect(db_path + "brainSegmentation.db")
conn2.text_factory = str
image_ids = []
ny_image_ids = []
for row in cursor:
# print(row)
ny_pid = row[0]
try:
if __name__ == "__main__":
os.nice(19)
util.setup("temp_convert/", "LGG")
util.mkdir_p(util.TEMP_FOLDER_PATH)
util.DATA_FOLDER = "/mnt/dokumneter/data/database/"
if True:
db_path = "/home/dahoiv/disk/data/database3/LGG/"
util.DATA_FOLDER = util.DATA_FOLDER + "LGG" + "/"
util.DB_PATH = util.DATA_FOLDER + "brainSegmentation.db"
convert_table_inv = ConvertDataToDB.get_convert_table(
'/home/dahoiv/disk/data/Segmentations/NY_PID_LGG segmentert.xlsx')
convert_table = {v: k for k, v in convert_table_inv.items()}
print(convert_table)
print(util.DB_PATH)
conn = sqlite3.connect(util.DB_PATH)
conn.text_factory = str
cursor = conn.execute('''SELECT pid from Patient''')
conn2 = sqlite3.connect(db_path + "brainSegmentation.db")
conn2.text_factory = str
image_ids = []
ny_image_ids = []
for row in cursor:
# print(row)
ny_pid = row[0]
try:
# -*- coding: utf-8 -*-
"""
Created on Wed Jun 8 10:17:43 2016
@author: dahoiv
"""
import os
import ConvertDataToDB
import image_registration
import do_img_registration_HGG as do_img_registration
if __name__ == "__main__":
os.nice(19)
image_registration.setup("HGG/")
image_registration.DATA_FOLDER = "/home/dahoiv/database_hgg/"
image_registration.DB_PATH = image_registration.DATA_FOLDER + "brainSegmentation.db"
ConvertDataToDB.copy_transforms(do_img_registration.find_images(),
"/mnt/dokumenter/daniel/database/")
