def snap_location(self,x="",y="",z="",offset="",path="",):
if offset:
self.move_XYstage(x,y)
self.use_afc(offset)
else:
self.move_XYstage(x,y,z)
self.mmc.snapImage()
self.img=self.mmc.getImage()
self.md=self.getFullSystemState()
if path:
FileOut.tif_writer(numpy_array=self.img,path=path,md_string=self.md)
scope.move_XYstage(location[0],location[1])
x1,y1,z1,o1=scope.get_x_y_z_offset()
scope.mmc.enableContinuousFocus(True)
scope.mmc.setAutoFocusOffset(Oinit)
while True:
if scope.mmc.isContinuousFocusLocked():
time.sleep(.3)
break
time.sleep(.3) ### added to see if it is reporting a lock before it is
x2,y2,z2,o2=scope.get_x_y_z_offset()
scope.mmc.enableContinuousFocus(False)
scope.mmc.snapImage()
img=scope.mmc.getImage()
file_name="Test%s_simple_wait_loc%s_t%s" % (test_count,loc_count,i)
save_loc=os.path.join(save_dir,file_name)
FileOut.tif_writer(numpy_array=img,path=save_loc)
locinfo[loc_count-1]+="%s\t%s\t%s\t%s\t%s\t%s\t%s\n" % (i,
x2,
y2,
z1,
z2,
o1,
o2)
print i
time.sleep(60)
loc_counter=0
for loc in locinfo:
loc_counter+=1
save_dir=r"C:\Users\Administrator\Desktop\MicroscopeControl\MicroscopeControl\Tests"
file_name="Test%s_position%s_info.tsv" % (test_count,loc_counter)