def runNeEst(files,runFolder,locisampling,popsampling,regressConfig):
statsFile = ""
#create output folder
#run neEstimator
neFile = ""
#run lineregress
configVals = LineRegress.neConfigRead(regressConfig)
statsFile = LineRegress._neStatsHelper(neFile, configVals["alpha"], outFileName=statsFile,significantValue=configVals["sigSlope"],firstVal=configVals["startData"])
return statsFile
def runNeEst(files, runFolder, locisampling, popsampling, regressConfig):
statsFile = ""
#create output folder
#run neEstimator
neFile = ""
#run lineregress
configVals = ResultScraper.configRead(regressConfig)
statsFile = LineRegress._neStatsHelper(
neFile,
configVals["alpha"],
outFileName=statsFile,
significantValue=configVals["sigSlope"],
firstVal=configVals["startData"])
return statsFile
# how many cycles to use from the first value reported
cycle_array = [5, 7, 10]
# what p value to use for significance
p_val_array = [0.1, 0.05, 0.15]
neFiles = sys.argv[1:len(sys.argv) - 1]
configName = sys.argv[-1]
print(configName)
config = configparser.ConfigParser()
config.read(configName)
configFile = "current.cfg"
for neFile in neFiles:
base_path, base_filename_full = ntpath.split(neFile)
base_filename = base_filename_full.split(".")[0]
print(base_filename)
for cycle_val in cycle_array:
config.set("data", "endCollect", str(cycle_val))
for p_val in p_val_array:
config.set("confidence", "alpha", str(p_val))
stat_filename = base_path + '/' + base_filename + '_' + str(
cycle_val) + 'cyc' + '_' + str(p_val) + 'P.stats.txt'
config.set("confidence", "outputFilename", stat_filename)
config.write(open(configFile, "w"))
if os.path.isfile(neFile):
LineRegress.neRun(neFile, configFile)
else:
print("Ne Datatable File not Found")
import glob
import os
import sys
import LineRegress
def getFiles(pattern):
files =glob.glob(pattern)
return files
if __name__ == "__main__":
neFile = sys.argv[1]
configFile = None
if len(sys.argv) ==3:
configName = sys.argv[2]
if not os.path.isfile(configName):
print configName +"does not exist, using defaults"
else:
configFile = configName
if os.path.isfile(neFile):
LineRegress.neGrapher(neFile,configFile)
LineRegress.neStats(neFile,configFile)
else:
print "Ne Datatable File not Found"