def transpSurf(amount):
if amount != -1:
aopacity = opacity = min(1.0, 1 - amount)
else:
opacity = 1
aopacity = -1
atoms = selAtoms()
import Midas
surfatoms = Midas.atomMSMSModels(atoms)
for s, atoms in surfatoms.items():
adjustMSMSTransparency(s, atoms, opacity, aopacity)
splist = selectedSurfacePieces(implied=True)
from chimera import MSMSModel
for p in splist:
s = p.model
if isinstance(s, MSMSModel) and s.molecule:
adjustMSMSTransparency(s, s.atoms, opacity, aopacity)
else:
adjustSurfacePieceTransparency(p, opacity)
if (len(atoms) > 0 and not selection.currentEmpty() and len(surfatoms) == 0
and len(splist) == 0):
from replyobj import warning
warning('No surfaces shown for selected atoms.\n')
def transpSurf(amount):
if amount != -1:
aopacity = opacity = min(1.0, 1 - amount)
else:
opacity = 1
aopacity = -1
atoms = selAtoms()
import Midas
surfatoms = Midas.atomMSMSModels(atoms)
for s,atoms in surfatoms.items():
adjustMSMSTransparency(s, atoms, opacity, aopacity)
splist = selectedSurfacePieces(implied = True)
from chimera import MSMSModel
for p in splist:
s = p.model
if isinstance(s, MSMSModel) and s.molecule:
adjustMSMSTransparency(s, s.atoms, opacity, aopacity)
else:
adjustSurfacePieceTransparency(p, opacity)
if (len(atoms) > 0 and not selection.currentEmpty()
and len(surfatoms) == 0 and len(splist) == 0):
from replyobj import warning
warning('No surfaces shown for selected atoms.\n')
def oneTransparentLayer(ol):
slist = set([p.model for p in selectedSurfacePieces(implied=True)])
for s in slist:
s.oneTransparentLayer = ol
# MSMS surfaces with just atoms selected.
import Midas
surfatoms = Midas.atomMSMSModels(selAtoms())
for s, atoms in surfatoms.items():
s.oneTransparentLayer = ol
def oneTransparentLayer(ol): slist = set([p.model for p in selectedSurfacePieces(implied = True)]) for s in slist: s.oneTransparentLayer = ol # MSMS surfaces with just atoms selected. import Midas surfatoms = Midas.atomMSMSModels(selAtoms()) for s,atoms in surfatoms.items(): s.oneTransparentLayer = ol
