def read_output(self, settings): # Code to write for collecting the output files from the algorithm, writes to the # output list in the object # What we want to do here is get the prediction rate on the last time # point and the network so we can compare it against a gold std. output_file = self.output_dir + "/output/" + "/nir_output.txt" net = Network() net.read_netmatrix_file(output_file, self.gene_list) self.network = net
def read_output(self,settings): # Code to write for collecting the output files from the algorithm, writes to the # output list in the object # What we want to do here is get the prediction rate on the last time # point and the network so we can compare it against a gold std. # This file is a bunch of zscores, so we have to load the cutoff we want output_file = self.output_dir + "/output/inferelator_output.csv" net = Network() net.read_netmatrix_file(output_file, self.gene_list) self.network = net return self.network