def open_skeleton_file ( open, dialog, smod ) :
if not open:
return
paths = dialog.getPaths()
path = paths[0]
import VolumePath
g = VolumePath.open_marker_set(path)
mlist = g.markers()
for m in mlist:
m.region = None
rid = int(m.extra_attributes['region_id'])
if rid in smod.id_to_region:
r = smod.id_to_region[rid]
rsize = int(m.extra_attributes['region_size'])
if r.point_count() == rsize:
m.region = r
#TODO: The regions file format renumbers the regions consecutively. So
# matching based on region id won't work. Should change file format to
# hdf5 and include region ids, colors, and any other useful per-region info.
nomatch = [m for m in mlist if m.region is None]
if nomatch:
umsg('%d of %d skeleton nodes did not match a region' %
(len(nomatch), len(mlist)))
if smod.adj_graph:
smod.adj_graph.close()
smod.adj_graph = g
def open_marker_set(path):
import VolumePath
VolumePath.open_marker_set(path)
models = []
return models
def open_marker_set(path): import VolumePath VolumePath.open_marker_set(path) models = [] return models
