def process_payload(self, claim, **kwargs):
"""
:param claim: contains the message inside the packet
{'bibcode': '....',
'orcidid': '.....',
'name': 'author name',
'facts': 'author name variants',
}
:return: no return
"""
if not isinstance(claim, dict):
raise ProcessingException('Received unknown payload {0}'.format(claim))
if not claim.get('orcidid'):
raise ProcessingException('Unusable payload, missing orcidid {0}'.format(claim))
bibcode = claim['bibcode']
rec = updater.retrieve_record(bibcode)
cl = updater.update_record(rec, claim)
if cl:
updater.record_claims(bibcode, rec['claims'], rec['authors'])
self.publish({'authors': rec.get('authors'), 'bibcode': rec['bibcode'], 'claims': rec.get('claims')})
else:
self.logger.warning('Claim refused for bibcode:{0} and orcidid:{1}'
.format(claim['bibcode'], claim['orcidid']))
def test_exact_match(self):
"""
Given an author with an exact name match, the Levenshtein matching function should not be called.
:return: None
"""
with patch.object(updater, 'find_orcid_position') as next_task:
self.assertFalse(next_task.called)
doc1 = {
'bibcode':
"2001RadR..155..543L",
"authors": [
"Li, Zhongkui", "Xia, Liqun", "Lee, Leo M.",
"Khaletskiy, Alexander", "Wang, J.", "Wong, J. Y.",
"Li, Jian-Jian"
],
'claims': {}
}
orcid_name = u'Wong, Jeffrey Yang'
r = updater.update_record(
doc1, {
'bibcode': '2001RadR..155..543L',
'orcidid': '0000-0003-2686-9241',
'account_id': '1',
'orcid_name': [orcid_name],
'author': [u'Wong, J Y'],
'author_norm': [u'Wong, J'],
'name': u'Wong, J Y',
'short_name': names.build_short_forms(orcid_name)
}, 0.8)
self.assertEqual(r, ('verified', 5))
self.assertEqual(
doc1['claims']['verified'],
['-', '-', '-', '-', '-', '0000-0003-2686-9241', '-'])
# find_orcid_position should be bypassed by the exact string match
self.assertFalse(next_task.called)
def task_match_claim(claim, **kwargs):
"""
Takes the claim, matches it in the database (will create
entry for the record, if not existing yet) and updates
the metadata.
:param claim: contains the message inside the packet
{'bibcode': '....',
'orcidid': '.....',
'name': 'author name',
'facts': 'author name variants',
}
:return: no return
"""
if not isinstance(claim, dict):
raise ProcessingException('Received unknown payload {0}'.format(claim))
if not claim.get('orcidid'):
raise ProcessingException(
'Unusable payload, missing orcidid {0}'.format(claim))
bibcode = claim['bibcode']
if claim.get('status') != 'removed':
identifiers = claim['identifiers']
authors = claim['author_list']
else:
metadata = app.retrieve_metadata(bibcode)
identifiers = metadata.get('identifier', [])
authors = metadata.get('author', [])
rec = app.retrieve_record(bibcode, authors)
cl = updater.update_record(rec, claim,
app.conf.get('MIN_LEVENSHTEIN_RATIO', 0.9))
if cl:
unique_bibs = list(set([bibcode] + identifiers))
app.record_claims(bibcode, rec['claims'], rec['authors'])
msg = OrcidClaims(authors=rec.get('authors'),
bibcode=rec['bibcode'],
verified=rec.get('claims', {}).get('verified', []),
unverified=rec.get('claims',
{}).get('unverified', []))
r = app.client.post(app.conf.get('API_ORCID_UPDATE_BIB_STATUS') %
claim.get('orcidid'),
json={
'bibcodes': unique_bibs,
'status': 'verified'
},
headers={
'Authorization':
'Bearer {0}'.format(app.conf.get('API_TOKEN'))
})
if r.status_code != 200:
logger.warning(
'IDs {ids} for {orcidid} not updated to: verified'.format(
ids=unique_bibs, orcidid=claim.get('orcidid')))
elif len(r.json()) != 1:
logger.warning(
'Number of updated bibcodes ({0}) does not match input ({1}) for {2}'
.format(r.text, unique_bibs, claim.get('orcidid')))
task_output_results.delay(msg)
else:
logger.warning('Claim refused for bibcode:{0} and orcidid:{1}'.format(
claim['bibcode'], claim['orcidid']))
def test_update_record(self):
"""
Update ADS document with the claim info
:return: no return
"""
doc = {
'bibcode': '2015ApJ...799..123B',
'authors': [
"Barrière, Nicolas M.",
"Krivonos, Roman",
"Tomsick, John A.",
"Bachetti, Matteo",
"Boggs, Steven E.",
"Chakrabarty, Deepto",
"Christensen, Finn E.",
"Craig, William W.",
"Hailey, Charles J.",
"Harrison, Fiona A.",
"Hong, Jaesub",
"Mori, Kaya",
"Stern, Daniel",
"Zhang, William W."
],
'claims': {}
}
r = updater.update_record(
doc,
{
'bibcode': '2015ApJ...799..123B',
'orcidid': '0000-0003-2686-9241',
'account_id': '1',
'orcid_name': [u'Stern, Daniel'],
'author': [u'Stern, D', u'Stern, D K', u'Stern, Daniel'],
'author_norm': [u'Stern, D'],
'name': u'Stern, D K'
}
)
self.assertEqual(r, ('verified', 12))
self.assertEqual(doc['claims']['verified'],
['-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '0000-0003-2686-9241', '-'])
updater.update_record(
doc,
{
'bibcode': '2015ApJ...799..123B',
'orcidid': '0000-0003-2686-9241',
'account_id': '1',
'orcid_name': [u'Stern, Daniel'],
'author': [u'Stern, D', u'Stern, D K', u'Stern, Daniel'],
'author_norm': [u'Stern, D'],
'name': u'Stern, D K',
'status': 'removed'
}
)
self.assertEqual(doc['claims']['verified'],
['-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-'])
# the size differs
doc['claims']['verified'] = ['-']
r = updater.update_record(
doc,
{
'bibcode': '2015ApJ...799..123B',
'orcidid': '0000-0003-2686-9241',
'account_id': '1',
'orcid_name': [u'Stern, Daniel'],
'author': [u'Stern, D', u'Stern, D K', u'Stern, Daniel'],
'author_norm': [u'Stern, D'],
'name': u'Stern, D K'
}
)
self.assertEqual(r, ('verified', 12))
self.assertEqual(doc['claims']['verified'],
['-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '0000-0003-2686-9241', '-'])
self.assertEqual(14, len(doc['claims']['verified']))
def test_update_record(self):
"""
Update ADS document with the claim info
:return: no return
"""
doc = {
'bibcode':
'2015ApJ...799..123B',
'authors': [
"Barrière, Nicolas M.", "Krivonos, Roman", "Tomsick, John A.",
"Bachetti, Matteo", "Boggs, Steven E.", "Chakrabarty, Deepto",
"Christensen, Finn E.", "Craig, William W.",
"Hailey, Charles J.", "Harrison, Fiona A.", "Hong, Jaesub",
"Mori, Kaya", "Stern, Daniel", "Yıldız, Umut"
],
'claims': {}
}
r = updater.update_record(
doc, {
'bibcode': '2015ApJ...799..123B',
'orcidid': '0000-0003-2686-9241',
'account_id': '1',
'orcid_name': [u'Stern, Daniel'],
'author': [u'Stern, D', u'Stern, D K', u'Stern, Daniel'],
'author_norm': [u'Stern, D'],
'name': u'Stern, D K'
}, 0.9)
self.assertEqual(r, ('verified', 12))
self.assertEqual(doc['claims']['verified'], [
'-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-',
'0000-0003-2686-9241', '-'
])
updater.update_record(
doc, {
'bibcode': '2015ApJ...799..123B',
'orcidid': '0000-0003-2686-9241',
'account_id': '1',
'orcid_name': [u'Stern, Daniel'],
'author': [u'Stern, D', u'Stern, D K', u'Stern, Daniel'],
'author_norm': [u'Stern, D'],
'name': u'Stern, D K',
'status': 'removed'
}, 0.9)
self.assertEqual(doc['claims']['verified'], [
'-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-',
'-'
])
# the size differs
doc['claims']['verified'] = ['-']
r = updater.update_record(
doc, {
'bibcode': '2015ApJ...799..123B',
'orcidid': '0000-0003-2686-9241',
'account_id': '1',
'orcid_name': [u'Stern, Daniel'],
'author': [u'Stern, D', u'Stern, D K', u'Stern, Daniel'],
'author_norm': [u'Stern, D'],
'name': u'Stern, D K'
}, 0.9)
self.assertEqual(r, ('verified', 12))
self.assertEqual(doc['claims']['verified'], [
'-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-',
'0000-0003-2686-9241', '-'
])
self.assertEqual(14, len(doc['claims']['verified']))
# check transliterated name version
r = updater.update_record(
doc, {
'bibcode': '2015ApJ...799..123B',
'orcidid': '0000-0001-2345-6789',
'account_id': '2',
'orcid_name': [u'Yildiz, Umut'],
'author': [u'Yildiz, U', u'Yildiz, Umut'],
'author_norm': [u'Yildiz, U'],
'name': u'Yildiz, Umut'
}, 0.9)
self.assertEqual(r, ('verified', 13))
self.assertEqual(doc['claims']['verified'], [
'-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-',
'0000-0003-2686-9241', '0000-0001-2345-6789'
])
doc_lev = {
'bibcode':
'2015ApJ...799..123B',
'authors': [
"Barrière, Nicolas M.", "Krivonos, Roman", "Tomsick, John A.",
"Bachetti, Matteo", "Boggs, Steven E.", "Chakrabarty, Deepto",
"Christensen, Finn E.", "Craig, William W.",
"Hailey, Charles J.", "Harrison, Fiona A.", "Hong, Jaesub",
"Mori, Kaya", "Stern, Daniel", "Zhang, William W."
],
'claims': {}
}
r_lev = updater.update_record(
doc_lev, {
'bibcode': '2015ApJ...799..123B',
'orcidid': '0000-0001-2345-6789',
'account_id': '1',
'orcid_name': [u'Zhang, Will'],
'author': [u'Zhang, Will'],
'author_norm': [u'Zhang, Will'],
'name': u'Zhang, Will'
}, 0.75)
self.assertEqual(r_lev, ('verified', 13))
self.assertEqual(doc_lev['claims']['verified'], [
'-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-', '-',
'0000-0001-2345-6789'
])
doc_blank = {
'bibcode':
'2018Test.........1A',
'authors': [
"Evans, D. F.", "Southworth, J.", "Smalley, B.",
"Jorgensen, U. G.", "Dominik, M.", "Tronsgaard, R."
],
'claims': {
'verified': ['0000-0009-8765-4321', '-', '-', '-', '-', '-']
}
}
r_blank = updater.update_record(
doc_blank, {
'bibcode': '2018Test.........1A',
'orcidid': '0000-0009-8765-4321',
'account_id': '2',
'orcid_name': [u'Tronsgaard, Rene'],
'author': [''],
'name': ''
}, 0.75)
self.assertEqual(r_blank, ('verified', 5))
self.assertEqual(doc_blank['claims']['verified'],
['-', '-', '-', '-', '-', '0000-0009-8765-4321'])
