def test_Block_basic(self):
a = CLT()
a.path_in = ["./data/vagus001.h5", "volume/data"]
a.path_out = ["/tmp/test.h5", "data"]
a.Sub_Volume = [[0, 100], [0, 100], [0, 17]]
a.blockSize = [50, 50, 50]
a.helo = 10
a.sigmaSmooth = 0.7
a.thresMembra = 0.7
a.sizeFilter = [20, 1000]
a.run()
res = a.res[::]
score = a.getScore()
assert res.shape == (100, 100, 17)
def test_CLT_basic(self):
a=CLT()
a.path_in= ["./data/vagus001.h5","volume/data"]
a.path_out = ["/tmp/test.h5","data"]
a.Sub_Volume = [[0,50],[0,50],[0,50]]
a.blockSize = [25,25,25]
a.helo = 10
a.sigmaSmooth = 0.7
a.thresMembra = 0.7
a.sizeFilter = [20,1000]
#test if executing twice does not fail
a.run()
a.run()
def test_CLT_basic(self):
a = CLT()
a.path_in = ["./data/vagus001.h5", "volume/data"]
a.path_out = ["/tmp/test.h5", "data"]
a.Sub_Volume = [[0, 50], [0, 50], [0, 50]]
a.blockSize = [25, 25, 25]
a.helo = 10
a.sigmaSmooth = 0.7
a.thresMembra = 0.7
a.sizeFilter = [20, 1000]
#test if executing twice does not fail
a.run()
a.run()
def test_Block_basic(self):
a=CLT()
a.path_in = ["./data/vagus001.h5","volume/data"]
a.path_out = ["/tmp/test.h5","data"]
a.Sub_Volume = [[0,100], [0,100], [0,17]]
a.blockSize = [50,50,50]
a.helo = 10
a.sigmaSmooth = 0.7
a.thresMembra = 0.7
a.sizeFilter = [20,1000]
a.run()
res = a.res[::]
score = a.getScore()
assert res.shape == (100,100,17)
