def __init__(self, **keywords): """ """ AbstractVCFMapper.__init__(self, **keywords) import re self.chr_pattern = re.compile(r'(\w+\d+).*') self.UCLAID_Pattern = re.compile(r'\w+/[\w\.]+/(?P<UCLAID>\d+)') self.contig_id_pattern = re.compile(r'vervet1_scaffolds_(?P<contigID>Contig\d+)') self.contig_number_pattern = re.compile(r'Contig(?P<contigNumber>\d+)')
def __init__(self, **keywords):
"""
"""
AbstractVCFMapper.__init__(self, **keywords)
import re
self.chr_pattern = re.compile(r'(\w+\d+).*')
self.UCLAID_Pattern = re.compile(r'\w+/[\w\.]+/(?P<UCLAID>\d+)')
self.contig_id_pattern = re.compile(
r'vervet1_scaffolds_(?P<contigID>Contig\d+)')
self.contig_number_pattern = re.compile(r'Contig(?P<contigNumber>\d+)')
def __init__(self, **keywords): """ """ AbstractVCFMapper.__init__(self, **keywords)
